Wall clock time and date at job start Tue Mar 31 2020 05:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47295 * 2 1 4 4 C 1.53003 * 109.47062 * 172.20287 * 3 2 1 5 5 C 1.53001 * 109.46930 * 187.66537 * 4 3 2 6 6 C 1.53002 * 109.47331 * 292.20156 * 3 2 1 7 7 N 1.46501 * 109.47248 * 169.10860 * 6 3 2 8 8 C 1.46494 * 120.00453 * 310.59926 * 7 6 3 9 9 C 1.50699 * 109.46903 * 265.58848 * 8 7 6 10 10 H 1.07997 * 120.00027 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99896 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00391 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99735 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47131 * 60.00270 * 13 11 9 15 15 H 1.48498 * 109.46991 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47254 * 299.99973 * 13 11 9 17 17 C 1.34773 * 119.99548 * 130.59085 * 7 6 3 18 18 O 1.21600 * 119.99903 * 191.62270 * 17 7 6 19 19 C 1.47498 * 120.00496 * 11.62595 * 17 7 6 20 20 N 1.33519 * 119.92598 * 7.43046 * 19 17 7 21 21 N 1.28377 * 123.16977 * 180.24961 * 20 19 17 22 22 C 1.34031 * 121.92025 * 359.78217 * 21 20 19 23 23 C 1.40254 * 121.55525 * 179.97438 * 22 21 20 24 24 C 1.36307 * 119.68660 * 180.02562 * 23 22 21 25 25 C 1.39207 * 121.10427 * 359.97438 * 24 23 22 26 26 C 1.36392 * 120.81422 * 359.97438 * 25 24 23 27 27 C 1.39986 * 119.49303 * 0.02562 * 26 25 24 28 28 C 1.39861 * 119.92838 * 187.22337 * 19 17 7 29 29 O 1.35271 * 121.38837 * 0.02562 * 28 19 17 30 30 H 1.08995 * 109.47220 * 65.96790 * 1 2 3 31 31 H 1.08997 * 109.47536 * 185.97541 * 1 2 3 32 32 H 1.09004 * 109.46659 * 305.97208 * 1 2 3 33 33 H 1.09000 * 109.46833 * 240.00255 * 2 1 3 34 34 H 1.08993 * 109.47673 * 120.00500 * 2 1 3 35 35 H 1.08994 * 109.47147 * 52.20308 * 3 2 1 36 36 H 1.09000 * 109.47044 * 307.66951 * 4 3 2 37 37 H 1.09006 * 109.47185 * 67.67128 * 4 3 2 38 38 H 1.09005 * 109.46925 * 46.77656 * 5 4 3 39 39 H 1.09003 * 109.46753 * 166.76812 * 5 4 3 40 40 H 1.08997 * 109.47956 * 286.77330 * 5 4 3 41 41 H 1.09002 * 109.46720 * 49.11634 * 6 3 2 42 42 H 1.08996 * 109.47613 * 289.11281 * 6 3 2 43 43 H 1.09006 * 109.46885 * 25.58616 * 8 7 6 44 44 H 1.08999 * 109.47600 * 145.58615 * 8 7 6 45 45 H 0.96994 * 120.00374 * 180.02562 * 12 11 9 46 46 H 1.08007 * 120.16004 * 0.06958 * 23 22 21 47 47 H 1.07998 * 119.44745 * 180.02562 * 24 23 22 48 48 H 1.08001 * 119.59361 * 180.02562 * 25 24 23 49 49 H 1.08004 * 120.25477 * 179.97438 * 26 25 24 50 50 H 0.96695 * 113.99892 * 269.72075 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5575 1.4468 0.1957 5 6 4.0429 2.8852 0.3869 6 6 1.6962 2.1050 -1.3356 7 7 1.9460 3.5457 -1.2446 8 6 1.4130 4.3118 -0.1154 9 6 0.0878 4.9175 -0.5002 10 1 -0.3170 4.7484 -1.4870 11 6 -0.6082 5.6868 0.4080 12 7 -0.1155 5.8924 1.6099 13 14 -2.2506 6.4382 -0.0693 14 1 -3.2035 5.3576 -0.4290 15 1 -2.7910 7.2147 1.0754 16 1 -2.0625 7.3402 -1.2338 17 6 2.6663 4.1663 -2.1998 18 8 3.0539 5.3056 -2.0252 19 6 2.9846 3.4636 -3.4570 20 7 2.4370 2.2728 -3.7116 21 7 2.6738 1.6053 -4.7823 22 6 3.4958 2.0642 -5.7363 23 6 3.7494 1.3282 -6.9029 24 6 4.5927 1.8311 -7.8484 25 6 5.2093 3.0674 -7.6776 26 6 4.9852 3.8110 -6.5564 27 6 4.1244 3.3227 -5.5663 28 6 3.8560 4.0481 -4.3817 29 8 4.4221 5.2549 -4.1512 30 1 -0.3633 0.4185 -0.9385 31 1 -0.3634 -1.0220 0.1070 32 1 -0.3633 0.6037 0.8317 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8898 35 1 1.5674 1.9949 0.8120 36 1 3.8119 0.8573 1.0765 37 1 4.0383 1.0148 -0.6820 38 1 3.4014 3.3922 1.1078 39 1 5.0684 2.8764 0.7562 40 1 4.0046 3.4115 -0.5668 41 1 0.6450 1.9325 -1.5667 42 1 2.3163 1.6778 -2.1235 43 1 1.2754 3.6501 0.7399 44 1 2.1124 5.1053 0.1479 45 1 -0.6054 6.4333 2.2489 46 1 3.2783 0.3677 -7.0518 47 1 4.7849 1.2613 -8.7455 48 1 5.8728 3.4427 -8.4427 49 1 5.4687 4.7688 -6.4330 50 1 3.9046 6.0016 -4.4821 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096411229.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:16 Heat of formation + Delta-G solvation = 13.504915 kcal Electronic energy + Delta-G solvation = -33441.558364 eV Core-core repulsion = 29242.382539 eV Total energy + Delta-G solvation = -4199.175825 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.63379 -39.44563 -38.03980 -37.81760 -36.78163 -33.93358 -32.86216 -32.39441 -31.78060 -31.47347 -30.46336 -27.97717 -27.00902 -25.30575 -25.04847 -24.14148 -22.93721 -22.48367 -21.52502 -20.24487 -19.25541 -19.15212 -18.62962 -17.73522 -16.57671 -16.41978 -16.04315 -15.64315 -15.21682 -15.08737 -14.80768 -14.59775 -14.39253 -14.17083 -14.06460 -13.70279 -13.38577 -13.16910 -12.67412 -12.60137 -12.55466 -12.30231 -12.21518 -12.12219 -12.02283 -11.87366 -11.21930 -11.12312 -11.09153 -10.99932 -10.77024 -10.60500 -10.46577 -10.44924 -10.39774 -10.19960 -10.06254 -9.94685 -9.68295 -9.45829 -9.38053 -8.91705 -8.49829 -8.39386 -7.46917 -6.01989 -4.06428 -0.28485 0.24822 1.41509 2.33334 3.33243 3.36777 3.37295 3.40816 3.45547 3.62325 3.87480 4.03635 4.13789 4.35935 4.46382 4.49514 4.66956 4.80699 4.88679 5.17090 5.18514 5.24331 5.29570 5.33147 5.39381 5.54110 5.56901 5.64070 5.80561 5.83783 5.88152 5.91664 5.98712 6.00049 6.12108 6.25358 6.31296 6.34511 6.38839 6.46929 6.49018 6.55414 6.61758 6.80081 6.89361 6.93749 7.14589 7.31576 7.48817 7.58475 7.94697 8.25939 8.36821 8.48555 8.85326 9.03221 9.57901 11.05508 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.009822 B = 0.003724 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.947476 B = 7516.365859 C = 8680.062535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.110 4.110 3 C -0.112 4.112 4 C -0.110 4.110 5 C -0.156 4.156 6 C 0.100 3.900 7 N -0.567 5.567 8 C 0.246 3.754 9 C -0.527 4.527 10 H 0.056 0.944 11 C 0.064 3.936 12 N -0.893 5.893 13 Si 0.895 3.105 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.278 1.278 17 C 0.564 3.436 18 O -0.523 6.523 19 C -0.027 4.027 20 N -0.160 5.160 21 N -0.223 5.223 22 C 0.084 3.916 23 C -0.082 4.082 24 C -0.093 4.093 25 C -0.106 4.106 26 C -0.085 4.085 27 C -0.106 4.106 28 C 0.199 3.801 29 O -0.457 6.457 30 H 0.059 0.941 31 H 0.046 0.954 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.049 0.951 38 H 0.065 0.935 39 H 0.038 0.962 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.111 0.889 43 H 0.043 0.957 44 H 0.044 0.956 45 H 0.263 0.737 46 H 0.146 0.854 47 H 0.136 0.864 48 H 0.134 0.866 49 H 0.141 0.859 50 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.116 -10.397 -16.124 21.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.131 4.131 4 C -0.147 4.147 5 C -0.214 4.214 6 C -0.024 4.024 7 N -0.296 5.296 8 C 0.127 3.873 9 C -0.566 4.566 10 H 0.074 0.926 11 C -0.138 4.138 12 N -0.532 5.532 13 Si 0.723 3.277 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.203 1.203 17 C 0.348 3.652 18 O -0.400 6.400 19 C -0.161 4.161 20 N -0.019 5.019 21 N -0.080 5.080 22 C -0.043 4.043 23 C -0.104 4.104 24 C -0.114 4.114 25 C -0.126 4.126 26 C -0.104 4.104 27 C -0.115 4.115 28 C 0.140 3.860 29 O -0.268 6.268 30 H 0.078 0.922 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.086 0.914 42 H 0.127 0.873 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.073 0.927 46 H 0.163 0.837 47 H 0.154 0.846 48 H 0.152 0.848 49 H 0.158 0.842 50 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 9.760 -11.041 -15.020 21.042 hybrid contribution -0.439 1.829 -0.871 2.073 sum 9.322 -9.212 -15.892 20.598 Atomic orbital electron populations 1.21820 0.95770 1.00747 1.02753 1.21444 0.96055 0.96041 1.01308 1.21739 0.95631 0.96001 0.99747 1.21510 0.95452 0.97322 1.00435 1.22026 0.99715 0.96600 1.03042 1.22380 1.02462 0.80266 0.97284 1.48077 1.48960 1.08625 1.23971 1.19417 0.93755 0.91227 0.82891 1.21415 1.04273 1.31359 0.99530 0.92610 1.24885 0.98000 0.96070 0.94862 1.69914 1.38760 1.39377 1.05171 0.86603 0.83791 0.79334 0.77962 1.20205 1.21185 1.20334 1.17141 0.80196 0.85820 0.82052 1.90793 1.52790 1.17639 1.78744 1.23763 0.97544 0.95289 0.99543 1.73530 1.15719 1.03075 1.09567 1.73888 1.11426 1.25930 0.96750 1.20354 0.95362 0.92126 0.96459 1.20805 0.98066 1.00214 0.91268 1.21070 0.95484 0.95709 0.99095 1.21072 0.99358 0.94591 0.97555 1.20922 0.96388 1.00600 0.92500 1.19225 1.00595 0.96317 0.95352 1.19465 0.88204 0.88427 0.89942 1.84544 1.47494 1.12743 1.82005 0.92175 0.93517 0.92366 0.92270 0.92403 0.89404 0.92680 0.93209 0.91584 0.94298 0.92225 0.91441 0.87255 0.93889 0.93816 0.92691 0.83672 0.84612 0.84805 0.84151 0.72922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.60 37.16 0.36 -1.80 16 2 C -0.11 -1.54 5.38 -26.73 -0.14 -1.68 16 3 C -0.11 -1.88 1.85 -90.62 -0.17 -2.04 16 4 C -0.11 -1.74 5.38 -26.73 -0.14 -1.88 16 5 C -0.16 -2.85 8.43 37.16 0.31 -2.54 16 6 C 0.10 1.86 4.47 -4.04 -0.02 1.84 16 7 N -0.57 -12.38 1.26 -176.30 -0.22 -12.60 16 8 C 0.25 6.31 3.28 -5.20 -0.02 6.30 16 9 C -0.53 -14.86 9.35 -34.44 -0.32 -15.19 16 10 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 11 C 0.06 1.81 5.46 -17.82 -0.10 1.72 16 12 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 13 Si 0.90 21.89 29.54 -169.99 -5.02 16.86 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 17 C 0.56 12.28 5.61 -12.49 -0.07 12.21 16 18 O -0.52 -12.72 14.86 -16.20 -0.24 -12.96 16 19 C -0.03 -0.49 6.61 -82.75 -0.55 -1.03 16 20 N -0.16 -2.78 7.33 33.32 0.24 -2.54 16 21 N -0.22 -3.44 11.54 32.20 0.37 -3.06 16 22 C 0.08 1.09 6.68 -84.83 -0.57 0.53 16 23 C -0.08 -0.77 9.99 -39.52 -0.40 -1.16 16 24 C -0.09 -0.65 9.94 -39.92 -0.40 -1.04 16 25 C -0.11 -0.75 9.96 -39.89 -0.40 -1.15 16 26 C -0.09 -0.80 9.62 -39.59 -0.38 -1.18 16 27 C -0.11 -1.37 5.75 -106.69 -0.61 -1.98 16 28 C 0.20 3.07 6.79 -37.74 -0.26 2.81 16 29 O -0.46 -6.55 11.10 -38.98 -0.43 -6.98 16 30 H 0.06 0.88 6.72 -51.93 -0.35 0.53 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.88 8.12 -51.93 -0.42 0.46 16 33 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 34 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 35 H 0.09 1.69 5.74 -51.93 -0.30 1.39 16 36 H 0.05 0.78 8.10 -51.93 -0.42 0.36 16 37 H 0.05 0.76 8.06 -51.93 -0.42 0.34 16 38 H 0.07 1.32 6.49 -51.93 -0.34 0.98 16 39 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 1.21 4.87 -51.93 -0.25 0.96 16 41 H 0.07 1.30 6.39 -51.93 -0.33 0.97 16 42 H 0.11 1.95 4.29 -98.85 -0.42 1.53 16 43 H 0.04 1.12 5.32 -51.93 -0.28 0.84 16 44 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.15 1.08 8.06 -52.48 -0.42 0.66 16 47 H 0.14 0.52 8.06 -52.49 -0.42 0.09 16 48 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 49 H 0.14 1.09 7.74 -52.48 -0.41 0.68 16 50 H 0.41 4.32 9.06 45.56 0.41 4.73 16 LS Contribution 395.54 15.07 5.96 5.96 Total: -1.00 -33.56 395.54 -8.88 -42.44 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -6.41 Total: 5.67 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: -3.87 Total: -7.29 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 1.13 Total: -43.70 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.67 Total: -19.95 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.56 -8.88 -42.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096411229.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.946 kcal (2) G-P(sol) polarization free energy of solvation -33.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds