Wall clock time and date at job start Tue Mar 31 2020 05:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47295 * 2 1 4 4 C 1.53003 * 109.47062 * 172.20287 * 3 2 1 5 5 C 1.53001 * 109.46930 * 187.66537 * 4 3 2 6 6 C 1.53002 * 109.47331 * 292.20156 * 3 2 1 7 7 N 1.46501 * 109.47248 * 169.10860 * 6 3 2 8 8 C 1.46494 * 120.00453 * 310.59926 * 7 6 3 9 9 C 1.50699 * 109.46903 * 265.58848 * 8 7 6 10 10 H 1.07997 * 120.00027 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99896 * 179.97438 * 9 8 7 12 12 N 1.31514 * 120.00391 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 119.99735 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47131 * 60.00270 * 13 11 9 15 15 H 1.48498 * 109.46991 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.47254 * 299.99973 * 13 11 9 17 17 C 1.34773 * 119.99548 * 130.59085 * 7 6 3 18 18 O 1.21600 * 119.99903 * 191.62270 * 17 7 6 19 19 C 1.47498 * 120.00496 * 11.62595 * 17 7 6 20 20 N 1.33519 * 119.92598 * 7.43046 * 19 17 7 21 21 N 1.28377 * 123.16977 * 180.24961 * 20 19 17 22 22 C 1.34031 * 121.92025 * 359.78217 * 21 20 19 23 23 C 1.40254 * 121.55525 * 179.97438 * 22 21 20 24 24 C 1.36307 * 119.68660 * 180.02562 * 23 22 21 25 25 C 1.39207 * 121.10427 * 359.97438 * 24 23 22 26 26 C 1.36392 * 120.81422 * 359.97438 * 25 24 23 27 27 C 1.39986 * 119.49303 * 0.02562 * 26 25 24 28 28 C 1.39861 * 119.92838 * 187.22337 * 19 17 7 29 29 O 1.35271 * 121.38837 * 0.02562 * 28 19 17 30 30 H 1.08995 * 109.47220 * 65.96790 * 1 2 3 31 31 H 1.08997 * 109.47536 * 185.97541 * 1 2 3 32 32 H 1.09004 * 109.46659 * 305.97208 * 1 2 3 33 33 H 1.09000 * 109.46833 * 240.00255 * 2 1 3 34 34 H 1.08993 * 109.47673 * 120.00500 * 2 1 3 35 35 H 1.08994 * 109.47147 * 52.20308 * 3 2 1 36 36 H 1.09000 * 109.47044 * 307.66951 * 4 3 2 37 37 H 1.09006 * 109.47185 * 67.67128 * 4 3 2 38 38 H 1.09005 * 109.46925 * 46.77656 * 5 4 3 39 39 H 1.09003 * 109.46753 * 166.76812 * 5 4 3 40 40 H 1.08997 * 109.47956 * 286.77330 * 5 4 3 41 41 H 1.09002 * 109.46720 * 49.11634 * 6 3 2 42 42 H 1.08996 * 109.47613 * 289.11281 * 6 3 2 43 43 H 1.09006 * 109.46885 * 25.58616 * 8 7 6 44 44 H 1.08999 * 109.47600 * 145.58615 * 8 7 6 45 45 H 0.96994 * 120.00374 * 180.02562 * 12 11 9 46 46 H 1.08007 * 120.16004 * 0.06958 * 23 22 21 47 47 H 1.07998 * 119.44745 * 180.02562 * 24 23 22 48 48 H 1.08001 * 119.59361 * 180.02562 * 25 24 23 49 49 H 1.08004 * 120.25477 * 179.97438 * 26 25 24 50 50 H 0.96695 * 113.99892 * 269.72075 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5575 1.4468 0.1957 5 6 4.0429 2.8852 0.3869 6 6 1.6962 2.1050 -1.3356 7 7 1.9460 3.5457 -1.2446 8 6 1.4130 4.3118 -0.1154 9 6 0.0878 4.9175 -0.5002 10 1 -0.3170 4.7484 -1.4870 11 6 -0.6082 5.6868 0.4080 12 7 -0.1155 5.8924 1.6099 13 14 -2.2506 6.4382 -0.0693 14 1 -3.2035 5.3576 -0.4290 15 1 -2.7910 7.2147 1.0754 16 1 -2.0625 7.3402 -1.2338 17 6 2.6663 4.1663 -2.1998 18 8 3.0539 5.3056 -2.0252 19 6 2.9846 3.4636 -3.4570 20 7 2.4370 2.2728 -3.7116 21 7 2.6738 1.6053 -4.7823 22 6 3.4958 2.0642 -5.7363 23 6 3.7494 1.3282 -6.9029 24 6 4.5927 1.8311 -7.8484 25 6 5.2093 3.0674 -7.6776 26 6 4.9852 3.8110 -6.5564 27 6 4.1244 3.3227 -5.5663 28 6 3.8560 4.0481 -4.3817 29 8 4.4221 5.2549 -4.1512 30 1 -0.3633 0.4185 -0.9385 31 1 -0.3634 -1.0220 0.1070 32 1 -0.3633 0.6037 0.8317 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8898 35 1 1.5674 1.9949 0.8120 36 1 3.8119 0.8573 1.0765 37 1 4.0383 1.0148 -0.6820 38 1 3.4014 3.3922 1.1078 39 1 5.0684 2.8764 0.7562 40 1 4.0046 3.4115 -0.5668 41 1 0.6450 1.9325 -1.5667 42 1 2.3163 1.6778 -2.1235 43 1 1.2754 3.6501 0.7399 44 1 2.1124 5.1053 0.1479 45 1 -0.6054 6.4333 2.2489 46 1 3.2783 0.3677 -7.0518 47 1 4.7849 1.2613 -8.7455 48 1 5.8728 3.4427 -8.4427 49 1 5.4687 4.7688 -6.4330 50 1 3.9046 6.0016 -4.4821 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096411229.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:15 Heat of formation + Delta-G solvation = -7.045994 kcal Electronic energy + Delta-G solvation = -33442.449518 eV Core-core repulsion = 29242.382539 eV Total energy + Delta-G solvation = -4200.066979 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.72518 -40.91847 -39.21405 -38.78785 -38.24309 -35.71018 -34.57998 -33.65004 -32.93419 -32.66285 -31.46458 -29.78615 -28.57535 -26.40191 -26.32421 -25.60681 -24.65364 -23.36830 -22.82388 -21.57696 -20.67206 -20.22763 -19.81110 -18.94795 -18.55483 -17.76103 -17.26272 -17.02106 -16.78224 -16.30802 -16.15292 -15.77780 -15.70205 -15.36380 -15.11726 -15.03883 -14.75911 -14.65966 -14.29559 -13.94309 -13.74862 -13.59779 -13.45448 -13.41051 -13.14997 -13.10200 -12.98050 -12.85906 -12.59023 -12.46771 -12.30742 -12.17618 -12.05314 -11.90009 -11.73852 -11.53336 -11.48126 -11.33138 -11.21514 -10.92138 -10.63731 -10.57024 -10.29454 -9.46313 -9.20801 -8.21395 -6.36346 -1.24789 -0.77745 0.56341 1.28545 1.34551 1.37441 1.45425 2.05548 2.17435 2.37748 2.46211 2.73274 2.83472 3.06842 3.16465 3.34427 3.61447 3.68445 3.84810 3.91005 4.04645 4.10313 4.16781 4.29472 4.37648 4.39125 4.50922 4.57869 4.60354 4.62646 4.76511 4.85180 4.90352 4.98772 5.01103 5.05047 5.09349 5.13162 5.20597 5.20790 5.24733 5.25116 5.28875 5.31876 5.41832 5.52882 5.55823 5.63289 5.70445 5.86508 6.08409 6.32515 6.64320 6.73406 7.15557 7.32398 7.40688 8.84554 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.009822 B = 0.003724 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.947476 B = 7516.365859 C = 8680.062535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.102 4.102 3 C -0.110 4.110 4 C -0.101 4.101 5 C -0.151 4.151 6 C 0.103 3.897 7 N -0.572 5.572 8 C 0.271 3.729 9 C -0.547 4.547 10 H 0.045 0.955 11 C 0.015 3.985 12 N -0.923 5.923 13 Si 0.962 3.038 14 H -0.265 1.265 15 H -0.275 1.275 16 H -0.277 1.277 17 C 0.561 3.439 18 O -0.566 6.566 19 C -0.063 4.063 20 N -0.182 5.182 21 N -0.231 5.231 22 C 0.067 3.933 23 C -0.094 4.094 24 C -0.067 4.067 25 C -0.081 4.081 26 C -0.100 4.100 27 C -0.110 4.110 28 C 0.199 3.801 29 O -0.466 6.466 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.038 0.962 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.062 0.938 38 H 0.036 0.964 39 H 0.056 0.944 40 H 0.033 0.967 41 H 0.054 0.946 42 H 0.125 0.875 43 H 0.034 0.966 44 H 0.000 1.000 45 H 0.268 0.732 46 H 0.164 0.836 47 H 0.183 0.817 48 H 0.178 0.822 49 H 0.155 0.845 50 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.296 -12.643 -20.178 26.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.140 4.140 3 C -0.129 4.129 4 C -0.139 4.139 5 C -0.209 4.209 6 C -0.020 4.020 7 N -0.300 5.300 8 C 0.150 3.850 9 C -0.586 4.586 10 H 0.064 0.936 11 C -0.184 4.184 12 N -0.563 5.563 13 Si 0.786 3.214 14 H -0.189 1.189 15 H -0.200 1.200 16 H -0.202 1.202 17 C 0.347 3.653 18 O -0.445 6.445 19 C -0.196 4.196 20 N -0.041 5.041 21 N -0.088 5.088 22 C -0.059 4.059 23 C -0.115 4.115 24 C -0.087 4.087 25 C -0.100 4.100 26 C -0.118 4.118 27 C -0.119 4.119 28 C 0.140 3.860 29 O -0.279 6.279 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.080 0.920 38 H 0.055 0.945 39 H 0.075 0.925 40 H 0.052 0.948 41 H 0.072 0.928 42 H 0.142 0.858 43 H 0.052 0.948 44 H 0.018 0.982 45 H 0.076 0.924 46 H 0.182 0.818 47 H 0.200 0.800 48 H 0.195 0.805 49 H 0.173 0.827 50 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 10.938 -13.312 -19.086 25.712 hybrid contribution -0.618 2.492 0.070 2.569 sum 10.319 -10.820 -19.016 24.190 Atomic orbital electron populations 1.21802 0.96035 1.01866 1.01253 1.21411 0.95765 0.93837 1.02996 1.21701 0.96298 0.97530 0.97352 1.21468 0.94577 0.95776 1.02044 1.21942 1.00259 0.97897 1.00789 1.22536 1.01981 0.78488 0.98984 1.47982 1.49134 1.09739 1.23142 1.18786 0.91890 0.90102 0.84180 1.21669 1.05439 1.32206 0.99242 0.93628 1.25748 1.01748 0.96250 0.94700 1.70033 1.40280 1.39834 1.06105 0.85556 0.79298 0.78670 0.77832 1.18944 1.19955 1.20240 1.17653 0.79099 0.85524 0.82996 1.90729 1.54440 1.19443 1.79915 1.23146 1.00889 0.96742 0.98850 1.73318 1.16543 1.03136 1.11144 1.73749 1.12338 1.25802 0.96941 1.20816 0.95190 0.92752 0.97168 1.21155 0.99101 1.00928 0.90318 1.21670 0.92455 0.95299 0.99304 1.21665 0.97829 0.93687 0.96811 1.21203 0.96185 1.01859 0.92592 1.19377 1.01386 0.96077 0.95055 1.19578 0.87496 0.88617 0.90341 1.84488 1.47741 1.13169 1.82551 0.93431 0.90844 0.94298 0.90677 0.90397 0.92626 0.90200 0.91956 0.94527 0.92504 0.94799 0.92805 0.85804 0.94809 0.98224 0.92351 0.81813 0.80005 0.80510 0.82746 0.71492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.31 9.60 71.98 0.69 -3.62 16 2 C -0.10 -2.79 5.38 30.59 0.16 -2.62 16 3 C -0.11 -3.85 1.85 -10.79 -0.02 -3.87 16 4 C -0.10 -3.27 5.38 30.60 0.16 -3.11 16 5 C -0.15 -5.91 8.43 71.98 0.61 -5.30 16 6 C 0.10 4.10 4.47 86.38 0.39 4.48 16 7 N -0.57 -27.29 1.26 -829.96 -1.04 -28.33 16 8 C 0.27 15.28 3.28 85.63 0.28 15.56 16 9 C -0.55 -32.97 9.35 25.60 0.24 -32.73 16 10 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 11 C 0.02 0.89 5.46 84.66 0.46 1.35 16 12 N -0.92 -56.83 13.29 21.45 0.28 -56.54 16 13 Si 0.96 46.28 29.54 68.60 2.03 48.30 16 14 H -0.26 -12.16 7.11 99.48 0.71 -11.46 16 15 H -0.27 -12.62 7.11 99.48 0.71 -11.92 16 16 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 17 C 0.56 26.67 5.61 86.68 0.49 27.16 16 18 O -0.57 -30.20 14.86 16.51 0.25 -29.95 16 19 C -0.06 -2.44 6.61 41.72 0.28 -2.16 16 20 N -0.18 -6.61 7.33 -48.51 -0.36 -6.97 16 21 N -0.23 -7.12 11.54 -52.04 -0.60 -7.73 16 22 C 0.07 1.65 6.68 40.15 0.27 1.92 16 23 C -0.09 -1.39 9.99 22.31 0.22 -1.17 16 24 C -0.07 -0.52 9.94 22.05 0.22 -0.30 16 25 C -0.08 -0.67 9.96 22.07 0.22 -0.45 16 26 C -0.10 -1.55 9.62 22.26 0.21 -1.34 16 27 C -0.11 -2.72 5.75 -21.20 -0.12 -2.84 16 28 C 0.20 6.36 6.79 23.46 0.16 6.52 16 29 O -0.47 -14.11 11.10 -65.02 -0.72 -14.83 16 30 H 0.05 1.44 6.72 -2.39 -0.02 1.43 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.04 1.22 8.12 -2.38 -0.02 1.20 16 33 H 0.07 1.84 8.13 -2.39 -0.02 1.82 16 34 H 0.08 1.84 8.10 -2.39 -0.02 1.82 16 35 H 0.06 2.32 5.74 -2.39 -0.01 2.30 16 36 H 0.08 2.19 8.10 -2.39 -0.02 2.17 16 37 H 0.06 1.88 8.06 -2.38 -0.02 1.86 16 38 H 0.04 1.60 6.49 -2.38 -0.02 1.59 16 39 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.03 1.48 4.87 -2.39 -0.01 1.47 16 41 H 0.05 2.24 6.39 -2.39 -0.02 2.23 16 42 H 0.13 4.67 4.29 -63.08 -0.27 4.40 16 43 H 0.03 1.95 5.32 -2.38 -0.01 1.94 16 44 H 0.00 -0.02 7.42 -2.39 -0.02 -0.04 16 45 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 46 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 47 H 0.18 -0.11 8.06 -2.91 -0.02 -0.14 16 48 H 0.18 0.10 8.06 -2.91 -0.02 0.08 16 49 H 0.15 1.95 7.74 -2.91 -0.02 1.92 16 50 H 0.42 9.66 9.06 -74.06 -0.67 8.99 16 Total: -1.00 -81.45 395.54 4.81 -76.64 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.05 Total: 21.93 kcal Atomic # 6 Polarization: -7.43 SS G_CDS: 4.92 Total: -2.51 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -1.71 Total: -99.57 kcal Atomic # 8 Polarization: -44.31 SS G_CDS: -0.48 Total: -44.79 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.30 kcal Total: -81.45 4.81 -76.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096411229.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.590 kcal (2) G-P(sol) polarization free energy of solvation -81.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds