Wall clock time and date at job start Tue Mar 31 2020 05:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86801 * 120.00258 * 2 1 4 4 H 1.48500 * 109.47117 * 239.99698 * 3 2 1 5 5 H 1.48502 * 109.46681 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47439 * 119.99568 * 3 2 1 7 7 C 1.39899 * 120.00094 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00146 * 190.11525 * 7 2 1 9 9 C 1.41160 * 119.99847 * 10.11929 * 7 2 1 10 10 C 1.40873 * 120.16076 * 209.54276 * 9 7 2 11 11 C 1.36376 * 119.82181 * 180.02562 * 10 9 7 12 12 C 1.39478 * 120.17309 * 359.97438 * 11 10 9 13 13 N 1.39241 * 119.83296 * 180.02562 * 12 11 10 14 14 C 1.34776 * 120.00329 * 34.07950 * 13 12 11 15 15 O 1.21589 * 119.99741 * 5.14208 * 14 13 12 16 16 N 1.34777 * 120.00410 * 185.13861 * 14 13 12 17 17 C 1.47017 * 125.64549 * 359.69405 * 16 14 13 18 18 C 1.54323 * 107.26996 * 181.32191 * 17 16 14 19 19 C 1.55152 * 102.94485 * 22.19262 * 18 17 16 20 20 H 1.08998 * 111.03535 * 82.58305 * 19 18 17 21 21 C 1.52995 * 111.00667 * 206.42681 * 19 18 17 22 22 N 1.46897 * 109.47201 * 177.18041 * 21 19 18 23 23 C 1.46846 * 110.99839 * 198.32083 * 22 21 19 24 24 C 1.53045 * 109.52175 * 174.15719 * 23 22 21 25 25 C 1.53114 * 109.27727 * 59.17936 * 24 23 22 26 26 C 1.53121 * 109.16220 * 302.34430 * 25 24 23 27 27 C 1.46845 * 111.00253 * 74.10820 * 22 21 19 28 28 C 1.47417 * 125.64944 * 179.97438 * 16 14 13 29 29 C 1.39481 * 120.33222 * 0.27473 * 12 11 10 30 30 C 1.36372 * 120.17060 * 359.44335 * 29 12 11 31 31 H 0.96997 * 120.00123 * 0.02562 * 1 2 3 32 32 H 1.07999 * 120.08598 * 0.04098 * 10 9 7 33 33 H 1.07997 * 119.91162 * 179.97438 * 11 10 9 34 34 H 0.97002 * 119.99932 * 214.08119 * 13 12 11 35 35 H 1.09006 * 109.88360 * 300.74113 * 17 16 14 36 36 H 1.09009 * 109.88514 * 61.90236 * 17 16 14 37 37 H 1.09006 * 110.71875 * 263.82805 * 18 17 16 38 38 H 1.09005 * 110.87300 * 140.63053 * 18 17 16 39 39 H 1.09005 * 109.46862 * 297.17455 * 21 19 18 40 40 H 1.08997 * 109.47269 * 57.17328 * 21 19 18 41 41 H 1.08998 * 109.46312 * 294.17195 * 23 22 21 42 42 H 1.09001 * 109.46582 * 54.14370 * 23 22 21 43 43 H 1.08998 * 109.49992 * 299.23334 * 24 23 22 44 44 H 1.09004 * 109.53140 * 179.14140 * 24 23 22 45 45 H 1.09002 * 109.51958 * 182.43899 * 25 24 23 46 46 H 1.09003 * 109.52341 * 62.25244 * 25 24 23 47 47 H 1.09001 * 109.49797 * 297.71793 * 26 25 24 48 48 H 1.09000 * 109.53790 * 177.61511 * 26 25 24 49 49 H 1.08992 * 109.46151 * 305.85160 * 27 22 21 50 50 H 1.08998 * 109.46084 * 65.82931 * 27 22 21 51 51 H 1.08996 * 110.37000 * 274.45280 * 28 16 14 52 52 H 1.09004 * 110.36653 * 36.66442 * 28 16 14 53 53 H 1.08000 * 119.91323 * 179.72844 * 29 12 11 54 54 H 1.07998 * 120.08916 * 180.27508 * 30 29 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.0967 1.6963 -1.2125 5 1 1.2778 2.7464 -0.0006 6 1 3.0965 1.6965 1.2125 7 6 2.0083 -1.2116 0.0005 8 1 3.0757 -1.2188 0.1648 9 6 1.3190 -2.4246 -0.2137 10 6 1.7925 -3.6193 0.3634 11 6 1.1214 -4.7874 0.1515 12 6 -0.0312 -4.8012 -0.6339 13 7 -0.7112 -5.9978 -0.8452 14 6 -0.7538 -6.9296 0.1276 15 8 -0.2798 -6.6889 1.2211 16 7 -1.3218 -8.1282 -0.1116 17 6 -1.9357 -8.5475 -1.3800 18 6 -2.4799 -9.9770 -1.1750 19 6 -2.6444 -10.0688 0.3650 20 1 -3.5852 -9.6211 0.6854 21 6 -2.5396 -11.5186 0.8423 22 7 -2.6323 -11.5595 2.3078 23 6 -2.1138 -12.8293 2.8326 24 6 -2.0905 -12.7791 4.3620 25 6 -3.5095 -12.5322 4.8813 26 6 -4.0444 -11.2286 4.2819 27 6 -4.0110 -11.3237 2.7548 28 6 -1.4357 -9.2337 0.8569 29 6 -0.5032 -3.6233 -1.2128 30 6 0.1538 -2.4464 -1.0053 31 1 -0.4850 0.8400 -0.0004 32 1 2.6844 -3.6100 0.9723 33 1 1.4833 -5.7042 0.5929 34 1 -1.1542 -6.1607 -1.6926 35 1 -2.7526 -7.8731 -1.6373 36 1 -1.1873 -8.5458 -2.1725 37 1 -1.7633 -10.7172 -1.5311 38 1 -3.4411 -10.1018 -1.6737 39 1 -3.3522 -12.1029 0.4105 40 1 -1.5839 -11.9368 0.5268 41 1 -2.7564 -13.6468 2.5057 42 1 -1.1026 -12.9908 2.4591 43 1 -1.4371 -11.9706 4.6897 44 1 -1.7200 -13.7272 4.7521 45 1 -3.4909 -12.4526 5.9683 46 1 -4.1545 -13.3601 4.5868 47 1 -3.4217 -10.3957 4.6084 48 1 -5.0700 -11.0684 4.6142 49 1 -4.3777 -10.3917 2.3249 50 1 -4.6447 -12.1483 2.4284 51 1 -0.5288 -9.8384 0.8508 52 1 -1.6239 -8.8437 1.8573 53 1 -1.3939 -3.6425 -1.8233 54 1 -0.2153 -1.5344 -1.4506 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097101262.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:51 Heat of formation + Delta-G solvation = -26.569903 kcal Electronic energy + Delta-G solvation = -31412.390356 eV Core-core repulsion = 27347.309851 eV Total energy + Delta-G solvation = -4065.080505 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 357.216 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.59636 -40.22677 -39.40994 -38.32843 -36.15772 -35.11624 -34.56570 -32.47923 -31.71713 -31.47145 -30.60797 -30.04238 -27.42685 -26.29650 -24.71984 -24.01527 -23.38290 -23.08824 -22.53120 -21.04662 -20.81320 -20.50334 -19.34442 -19.08789 -18.05386 -17.36019 -17.01553 -16.82389 -16.23939 -16.19999 -15.85592 -15.65118 -15.34638 -15.04511 -14.79485 -14.68188 -14.46962 -14.38702 -14.14544 -13.99841 -13.91963 -13.81798 -13.61111 -13.24921 -13.21616 -13.09944 -12.84188 -12.75728 -12.47326 -12.44158 -12.21266 -12.09442 -11.93451 -11.78239 -11.64548 -11.57146 -11.40830 -11.24804 -11.23095 -11.09379 -11.04908 -10.70468 -9.65405 -9.46748 -9.17770 -8.74387 -8.53834 -6.27636 0.85168 1.13725 1.40186 1.49512 1.52573 1.67682 2.17828 2.24845 2.80071 2.89157 3.13207 3.65585 3.69522 3.73293 3.82191 3.92691 4.02876 4.07129 4.27836 4.32969 4.38156 4.39799 4.46658 4.49782 4.51681 4.62601 4.66933 4.70362 4.73115 4.76486 4.86616 4.90247 4.94281 4.96360 5.00149 5.06730 5.07340 5.09552 5.14512 5.16036 5.24249 5.27203 5.32482 5.35820 5.44215 5.44709 5.48880 5.66479 5.83841 6.04847 6.12814 6.20019 6.22945 6.23623 6.38887 6.67011 6.95671 7.01083 7.04025 7.63680 8.40328 Molecular weight = 357.22amu Principal moments of inertia in cm(-1) A = 0.018453 B = 0.001749 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.983707 B =16003.918698 C =16742.586903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.030 3.970 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.264 1.264 7 C -0.497 4.497 8 H 0.074 0.926 9 C 0.071 3.929 10 C -0.225 4.225 11 C -0.093 4.093 12 C 0.035 3.965 13 N -0.656 5.656 14 C 0.706 3.294 15 O -0.628 6.628 16 N -0.639 5.639 17 C 0.089 3.911 18 C -0.110 4.110 19 C -0.084 4.084 20 H 0.080 0.920 21 C 0.073 3.927 22 N -0.558 5.558 23 C 0.059 3.941 24 C -0.119 4.119 25 C -0.118 4.118 26 C -0.121 4.121 27 C 0.058 3.942 28 C 0.144 3.856 29 C -0.116 4.116 30 C -0.159 4.159 31 H 0.287 0.713 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.411 0.589 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.059 0.941 40 H 0.083 0.917 41 H 0.041 0.959 42 H 0.076 0.924 43 H 0.053 0.947 44 H 0.078 0.922 45 H 0.064 0.936 46 H 0.067 0.933 47 H 0.050 0.950 48 H 0.074 0.926 49 H 0.069 0.931 50 H 0.041 0.959 51 H 0.059 0.941 52 H 0.046 0.954 53 H 0.124 0.876 54 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.742 -26.731 -1.977 29.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.183 4.183 3 Si 0.808 3.192 4 H -0.182 1.182 5 H -0.191 1.191 6 H -0.189 1.189 7 C -0.527 4.527 8 H 0.092 0.908 9 C 0.068 3.932 10 C -0.245 4.245 11 C -0.113 4.113 12 C -0.059 4.059 13 N -0.304 5.304 14 C 0.409 3.591 15 O -0.509 6.509 16 N -0.377 5.377 17 C -0.033 4.033 18 C -0.148 4.148 19 C -0.103 4.103 20 H 0.098 0.902 21 C -0.055 4.055 22 N -0.283 5.283 23 C -0.069 4.069 24 C -0.157 4.157 25 C -0.156 4.156 26 C -0.158 4.158 27 C -0.070 4.070 28 C 0.021 3.979 29 C -0.137 4.137 30 C -0.179 4.179 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.248 0.752 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.127 0.873 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.059 0.941 42 H 0.094 0.906 43 H 0.072 0.928 44 H 0.096 0.904 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.069 0.931 48 H 0.092 0.908 49 H 0.088 0.912 50 H 0.059 0.941 51 H 0.078 0.922 52 H 0.065 0.935 53 H 0.142 0.858 54 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.289 -26.019 -0.997 28.380 hybrid contribution -0.132 0.402 -0.155 0.451 sum -11.421 -25.617 -1.151 28.071 Atomic orbital electron populations 1.69860 1.08767 1.30382 1.37174 1.26762 0.95702 1.04416 0.91433 0.85174 0.78589 0.75479 0.79931 1.18191 1.19130 1.18861 1.19724 0.95922 0.91597 1.45465 0.90795 1.17998 0.92905 0.92786 0.89496 1.20823 1.03480 0.93696 1.06536 1.20349 0.94452 0.97148 0.99378 1.17051 0.95245 0.85045 1.08563 1.41898 1.56304 1.15392 1.16827 1.15740 0.79436 0.80360 0.83614 1.90894 1.54632 1.80064 1.25279 1.47676 1.61356 1.12222 1.16427 1.22321 0.97849 0.97903 0.85267 1.22644 1.03467 0.94238 0.94415 1.22296 0.97010 0.95327 0.95709 0.90154 1.22005 1.02470 0.94340 0.86660 1.61831 1.21664 1.34633 1.10133 1.22083 1.00044 0.89329 0.95430 1.21598 0.97240 1.01944 0.94897 1.21554 0.96401 0.97326 1.00282 1.21600 1.01229 0.98149 0.94871 1.22086 0.88400 1.00701 0.95799 1.21969 0.98497 0.85823 0.91583 1.20456 0.99734 0.90957 1.02542 1.20935 0.98899 0.96568 1.01546 0.90238 0.88743 0.88488 0.75208 0.90708 0.90494 0.88845 0.87297 0.92286 0.89814 0.94130 0.90598 0.92817 0.90370 0.91707 0.91478 0.93082 0.90784 0.91248 0.94055 0.92241 0.93513 0.85789 0.86832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.03 10.85 21.82 0.24 -44.79 16 2 C 0.03 1.57 5.26 85.24 0.45 2.01 16 3 Si 0.99 39.56 29.57 68.60 2.03 41.59 16 4 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 5 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 7 C -0.50 -28.04 9.04 23.39 0.21 -27.82 16 8 H 0.07 4.02 7.87 -2.91 -0.02 4.00 16 9 C 0.07 4.05 5.55 -21.27 -0.12 3.93 16 10 C -0.23 -12.42 9.74 22.48 0.22 -12.20 16 11 C -0.09 -4.84 8.57 22.13 0.19 -4.65 16 12 C 0.04 1.65 6.28 38.56 0.24 1.89 16 13 N -0.66 -24.61 5.26 -316.78 -1.67 -26.28 16 14 C 0.71 27.78 8.21 179.05 1.47 29.25 16 15 O -0.63 -31.42 14.29 -4.00 -0.06 -31.48 16 16 N -0.64 -17.91 3.33 -829.72 -2.76 -20.67 16 17 C 0.09 1.49 6.16 86.73 0.53 2.03 16 18 C -0.11 -1.11 6.42 31.78 0.20 -0.91 16 19 C -0.08 -1.23 3.04 -9.40 -0.03 -1.26 16 20 H 0.08 1.28 6.82 -2.39 -0.02 1.27 16 21 C 0.07 0.86 4.44 86.30 0.38 1.24 16 22 N -0.56 -8.45 4.38 -896.38 -3.93 -12.38 16 23 C 0.06 0.75 5.43 86.33 0.47 1.22 16 24 C -0.12 -1.59 6.09 30.65 0.19 -1.40 16 25 C -0.12 -1.48 6.00 30.67 0.18 -1.30 16 26 C -0.12 -1.79 6.09 30.65 0.19 -1.60 16 27 C 0.06 0.82 5.30 86.33 0.46 1.28 16 28 C 0.14 3.57 6.18 86.87 0.54 4.10 16 29 C -0.12 -5.48 9.89 22.13 0.22 -5.26 16 30 C -0.16 -8.59 8.60 22.48 0.19 -8.40 16 31 H 0.29 14.00 8.30 -92.71 -0.77 13.23 16 32 H 0.09 5.02 8.06 -2.91 -0.02 4.99 16 33 H 0.10 5.11 6.44 -2.91 -0.02 5.09 16 34 H 0.41 11.79 7.79 -92.71 -0.72 11.07 16 35 H 0.07 1.13 8.12 -2.38 -0.02 1.11 16 36 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.09 0.72 8.04 -2.38 -0.02 0.71 16 38 H 0.11 0.61 8.14 -2.38 -0.02 0.59 16 39 H 0.06 0.51 8.02 -2.38 -0.02 0.49 16 40 H 0.08 0.90 7.81 -2.39 -0.02 0.88 16 41 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.08 0.94 7.94 -2.39 -0.02 0.92 16 43 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 44 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 46 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.07 1.06 6.65 -2.39 -0.02 1.04 16 50 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 51 H 0.06 1.48 8.02 -2.39 -0.02 1.46 16 52 H 0.05 1.47 8.03 -2.38 -0.02 1.46 16 53 H 0.12 4.88 8.06 -2.91 -0.02 4.86 16 54 H 0.11 6.26 6.24 -2.91 -0.02 6.24 16 Total: -1.00 -73.81 418.92 0.20 -73.61 By element: Atomic # 1 Polarization: 38.07 SS G_CDS: 0.16 Total: 38.23 kcal Atomic # 6 Polarization: -24.03 SS G_CDS: 6.19 Total: -17.85 kcal Atomic # 7 Polarization: -95.99 SS G_CDS: -8.12 Total: -104.11 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -0.06 Total: -31.48 kcal Atomic # 14 Polarization: 39.56 SS G_CDS: 2.03 Total: 41.59 kcal Total: -73.81 0.20 -73.61 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097101262.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.040 kcal (2) G-P(sol) polarization free energy of solvation -73.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds