Wall clock time and date at job start Tue Mar 31 2020 04:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33387 * 125.20201 * 2 1 4 4 C 1.38432 * 114.91635 * 180.02562 * 3 2 1 5 5 C 1.50698 * 122.53493 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46665 * 145.02756 * 5 4 3 7 7 C 1.53006 * 109.47184 * 265.02367 * 5 4 3 8 8 N 1.46492 * 109.47354 * 25.02842 * 5 4 3 9 9 C 1.38106 * 120.00083 * 155.00130 * 8 5 4 10 10 N 1.32864 * 120.81489 * 359.97438 * 9 8 5 11 11 C 1.32119 * 121.19538 * 179.97438 * 10 9 8 12 12 N 1.31511 * 122.64574 * 359.97438 * 11 10 9 13 13 C 1.33195 * 120.68232 * 0.02562 * 12 11 10 14 14 C 1.40818 * 120.81321 * 179.71817 * 9 8 5 15 15 C 1.41160 * 134.69771 * 0.02562 * 14 9 8 16 16 N 1.30248 * 108.47237 * 179.97438 * 15 14 9 17 17 N 1.36315 * 134.61347 * 180.02562 * 13 12 11 18 18 C 1.46499 * 125.87601 * 359.97144 * 17 13 12 19 19 C 1.50698 * 109.46946 * 90.00031 * 18 17 13 20 20 H 1.08003 * 120.00521 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00026 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99878 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00221 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46950 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47203 * 119.99845 * 23 21 19 26 26 H 1.48494 * 109.47326 * 240.00182 * 23 21 19 27 27 C 1.33390 * 114.92061 * 0.24911 * 4 3 2 28 28 C 1.50702 * 125.20093 * 179.75319 * 27 4 3 29 29 S 1.75886 * 125.19888 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.47162 * 89.99544 * 1 2 3 31 31 H 1.09000 * 109.47239 * 210.00397 * 1 2 3 32 32 H 1.09002 * 109.46326 * 329.99725 * 1 2 3 33 33 H 1.07993 * 122.54081 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.47050 * 180.02562 * 7 5 4 35 35 H 1.09001 * 109.46801 * 300.00442 * 7 5 4 36 36 H 1.09001 * 109.46998 * 60.00038 * 7 5 4 37 37 H 0.97005 * 120.00153 * 334.99428 * 8 5 4 38 38 H 1.08000 * 118.67927 * 180.02562 * 11 10 9 39 39 H 1.08003 * 125.76829 * 0.02562 * 15 14 9 40 40 H 1.08994 * 109.47534 * 209.99915 * 18 17 13 41 41 H 1.08999 * 109.47199 * 330.00311 * 18 17 13 42 42 H 0.97005 * 119.99623 * 179.97438 * 22 21 19 43 43 H 1.08996 * 109.46725 * 90.00232 * 28 27 4 44 44 H 1.09003 * 109.46854 * 210.00347 * 28 27 4 45 45 H 1.09001 * 109.46911 * 330.00192 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6381 0.8428 -0.0006 5 6 4.6624 1.9481 -0.0012 6 1 5.5272 1.6423 0.5875 7 6 5.1002 2.2369 -1.4386 8 7 4.0767 3.1570 0.5831 9 6 4.8923 4.1086 1.1631 10 7 6.2102 3.9440 1.2005 11 6 6.9976 4.8497 1.7530 12 7 6.5360 5.9564 2.2932 13 6 5.2291 6.2130 2.3054 14 6 4.3481 5.2798 1.7246 15 6 3.0430 5.7980 1.8689 16 7 3.1199 6.9458 2.4796 17 7 4.4587 7.2362 2.7720 18 6 4.9477 8.4381 3.4519 19 6 5.2338 9.5105 2.4326 20 1 5.0684 9.3162 1.3832 21 6 5.7079 10.7396 2.8396 22 7 5.9098 10.9762 4.1175 23 14 6.0619 12.0693 1.5762 24 1 5.7537 11.5556 0.2174 25 1 5.2187 13.2584 1.8595 26 1 7.4953 12.4506 1.6473 27 6 3.9751 -0.4479 -0.0063 28 6 5.3860 -0.9772 -0.0134 29 16 2.5209 -1.4373 -0.0006 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3632 0.8900 0.5139 33 1 1.8669 2.0894 0.0004 34 1 5.8414 3.0361 -1.4390 35 1 5.5360 1.3373 -1.8733 36 1 4.2353 2.5427 -2.0273 37 1 3.1159 3.2892 0.5626 38 1 8.0633 4.6747 1.7606 39 1 2.1341 5.3226 1.5308 40 1 4.1906 8.7938 4.1507 41 1 5.8618 8.2011 3.9963 42 1 6.2436 11.8409 4.4038 43 1 5.7300 -1.1084 1.0125 44 1 5.4116 -1.9363 -0.5307 45 1 6.0369 -0.2698 -0.5272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200080.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:54 Heat of formation + Delta-G solvation = 140.917178 kcal Electronic energy + Delta-G solvation = -28396.584440 eV Core-core repulsion = 24542.146153 eV Total energy + Delta-G solvation = -3854.438287 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 357.132 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.38378 -39.62248 -38.28408 -36.13993 -33.98643 -33.55413 -32.32407 -31.27623 -30.74066 -29.72094 -28.72473 -27.16762 -25.35136 -24.30298 -23.85364 -23.09766 -22.31062 -21.42592 -20.06138 -18.70163 -17.91813 -17.58382 -16.82545 -16.63058 -16.46704 -15.55175 -15.12801 -14.80271 -14.67453 -14.60104 -14.11304 -13.92165 -13.76226 -13.71975 -13.57030 -13.34250 -13.21483 -13.18100 -12.91516 -12.40413 -12.26913 -12.15302 -11.83426 -11.70824 -11.64705 -11.41013 -11.16924 -11.00226 -10.93107 -10.83591 -10.74320 -10.27937 -10.06672 -9.81205 -9.25776 -8.75159 -8.65596 -8.59715 -8.58650 -8.20551 -7.61641 -6.20973 -4.27217 0.65700 1.26505 1.33442 1.64181 1.96291 2.33190 2.96333 3.05361 3.16316 3.24036 3.31058 3.37819 4.32189 4.37377 4.42489 4.47652 4.57938 4.74091 4.77150 4.92147 4.97170 5.02645 5.12369 5.14028 5.14818 5.15910 5.21206 5.25597 5.28926 5.46160 5.53061 5.60972 5.66922 5.70783 5.75888 5.86047 6.01605 6.11803 6.19266 6.38385 6.71065 6.94775 7.04767 7.12066 7.27801 7.52055 7.73580 7.91764 7.94169 8.24660 8.73527 8.84883 9.37780 10.87289 Molecular weight = 357.13amu Principal moments of inertia in cm(-1) A = 0.019306 B = 0.002185 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.971726 B =12814.268691 C =13495.315271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.176 4.176 3 C -0.132 4.132 4 C -0.109 4.109 5 C 0.216 3.784 6 H 0.103 0.897 7 C -0.157 4.157 8 N -0.701 5.701 9 C 0.512 3.488 10 N -0.618 5.618 11 C 0.366 3.634 12 N -0.555 5.555 13 C 0.364 3.636 14 C -0.338 4.338 15 C 0.068 3.932 16 N -0.243 5.243 17 N -0.332 5.332 18 C 0.263 3.737 19 C -0.532 4.532 20 H 0.062 0.938 21 C 0.066 3.934 22 N -0.891 5.891 23 Si 0.907 3.093 24 H -0.273 1.273 25 H -0.281 1.281 26 H -0.280 1.280 27 C -0.170 4.170 28 C -0.087 4.087 29 S 0.095 5.905 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.137 0.863 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.407 0.593 38 H 0.195 0.805 39 H 0.181 0.819 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.267 0.733 43 H 0.077 0.923 44 H 0.068 0.932 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.230 -26.869 -9.796 29.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.293 4.293 3 C -0.162 4.162 4 C -0.122 4.122 5 C 0.108 3.892 6 H 0.121 0.879 7 C -0.215 4.215 8 N -0.335 5.335 9 C 0.260 3.740 10 N -0.348 5.348 11 C 0.073 3.927 12 N -0.280 5.280 13 C 0.116 3.884 14 C -0.355 4.355 15 C -0.127 4.127 16 N -0.059 5.059 17 N -0.119 5.119 18 C 0.146 3.854 19 C -0.571 4.571 20 H 0.080 0.920 21 C -0.137 4.137 22 N -0.529 5.529 23 Si 0.734 3.266 24 H -0.197 1.197 25 H -0.207 1.207 26 H -0.206 1.206 27 C -0.287 4.287 28 C -0.145 4.145 29 S 0.360 5.640 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.154 0.846 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.245 0.755 38 H 0.211 0.789 39 H 0.198 0.802 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.081 -27.281 -9.073 29.386 hybrid contribution -0.366 1.916 -0.932 2.162 sum -6.447 -25.365 -10.005 28.018 Atomic orbital electron populations 1.20351 0.87707 1.03315 1.02812 1.24369 0.99921 0.95516 1.09540 1.19763 0.92261 0.99204 1.04939 1.18858 0.94509 0.93938 1.04854 1.19433 0.93717 0.81032 0.94983 0.87939 1.22164 1.01849 1.02364 0.95155 1.44462 1.08182 1.19381 1.61442 1.17876 0.88133 0.84099 0.83913 1.67931 1.02228 1.34905 1.29779 1.24406 0.99439 0.82666 0.86230 1.67514 1.12162 1.22708 1.25576 1.18930 0.89077 0.88352 0.92030 1.19602 0.96271 1.00990 1.18683 1.23340 0.96086 0.93379 0.99917 1.76937 0.97780 1.14974 1.16193 1.49457 1.00686 1.16771 1.44958 1.19793 0.95702 0.77378 0.92480 1.21286 1.45231 0.97044 0.93492 0.92019 1.24902 0.94820 0.98261 0.95750 1.69931 1.44843 1.23922 1.14223 0.86290 0.78084 0.81013 0.81202 1.19708 1.20657 1.20583 1.24150 0.99250 0.95484 1.09853 1.20412 0.89638 1.01363 1.03134 1.84201 0.96306 1.09442 1.74061 0.90676 0.91336 0.90314 0.84572 0.91144 0.91763 0.92613 0.75545 0.78894 0.80240 0.92828 0.92238 0.92331 0.90433 0.91260 0.89964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.38 36.01 0.37 -0.10 16 2 C -0.18 -1.41 6.51 -36.00 -0.23 -1.65 16 3 C -0.13 -1.13 9.22 -41.21 -0.38 -1.51 16 4 C -0.11 -1.00 4.96 -106.25 -0.53 -1.53 16 5 C 0.22 2.15 2.27 -69.08 -0.16 1.99 16 6 H 0.10 1.12 6.95 -51.93 -0.36 0.76 16 7 C -0.16 -1.47 9.42 37.16 0.35 -1.12 16 8 N -0.70 -8.05 5.14 -54.72 -0.28 -8.33 16 9 C 0.51 7.89 7.53 -154.85 -1.17 6.72 16 10 N -0.62 -9.62 9.34 -13.62 -0.13 -9.74 16 11 C 0.37 6.09 12.24 -92.12 -1.13 4.96 16 12 N -0.55 -11.69 10.47 -13.97 -0.15 -11.84 16 13 C 0.36 8.06 8.04 -156.23 -1.26 6.81 16 14 C -0.34 -6.16 6.14 -106.82 -0.66 -6.82 16 15 C 0.07 1.16 11.87 -17.11 -0.20 0.96 16 16 N -0.24 -5.24 12.45 30.80 0.38 -4.85 16 17 N -0.33 -8.01 3.63 -61.65 -0.22 -8.23 16 18 C 0.26 7.07 6.19 -5.20 -0.03 7.04 16 19 C -0.53 -15.27 9.39 -34.44 -0.32 -15.60 16 20 H 0.06 1.83 7.81 -52.48 -0.41 1.42 16 21 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 22 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 23 Si 0.91 21.81 29.54 -169.99 -5.02 16.79 16 24 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 C -0.17 -1.44 6.51 -36.00 -0.23 -1.67 16 28 C -0.09 -0.57 9.79 36.01 0.35 -0.21 16 29 S 0.09 0.75 23.31 -107.50 -2.51 -1.76 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.14 1.00 6.52 -52.49 -0.34 0.65 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.51 7.26 -51.93 -0.38 0.13 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.41 3.95 6.40 -40.82 -0.26 3.69 16 38 H 0.19 2.41 8.06 -52.49 -0.42 1.99 16 39 H 0.18 2.10 8.06 -52.48 -0.42 1.68 16 40 H 0.05 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.06 1.67 8.14 -51.93 -0.42 1.25 16 42 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.50 6.49 -51.93 -0.34 0.17 16 LS Contribution 393.55 15.07 5.93 5.93 Total: -1.00 -33.25 393.55 -12.45 -45.70 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -5.87 Total: 1.45 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -5.32 Total: 0.04 kcal Atomic # 7 Polarization: -68.49 SS G_CDS: 0.34 Total: -68.15 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -2.51 Total: -1.76 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.25 -12.45 -45.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200080.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.613 kcal (2) G-P(sol) polarization free energy of solvation -33.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds