Wall clock time and date at job start Tue Mar 31 2020 04:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.33387 * 125.20201 * 2 1 4 4 C 1.38432 * 114.91635 * 180.02562 * 3 2 1 5 5 C 1.50698 * 122.53493 * 179.97438 * 4 3 2 6 6 H 1.09001 * 109.46665 * 145.02756 * 5 4 3 7 7 C 1.53006 * 109.47184 * 265.02367 * 5 4 3 8 8 N 1.46492 * 109.47354 * 25.02842 * 5 4 3 9 9 C 1.38106 * 120.00083 * 155.00130 * 8 5 4 10 10 N 1.32864 * 120.81489 * 359.97438 * 9 8 5 11 11 C 1.32119 * 121.19538 * 179.97438 * 10 9 8 12 12 N 1.31511 * 122.64574 * 359.97438 * 11 10 9 13 13 C 1.33195 * 120.68232 * 0.02562 * 12 11 10 14 14 C 1.40818 * 120.81321 * 179.71817 * 9 8 5 15 15 C 1.41160 * 134.69771 * 0.02562 * 14 9 8 16 16 N 1.30248 * 108.47237 * 179.97438 * 15 14 9 17 17 N 1.36315 * 134.61347 * 180.02562 * 13 12 11 18 18 C 1.46499 * 125.87601 * 359.97144 * 17 13 12 19 19 C 1.50698 * 109.46946 * 90.00031 * 18 17 13 20 20 H 1.08003 * 120.00521 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00026 * 180.02562 * 19 18 17 22 22 N 1.31514 * 119.99878 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00221 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46950 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47203 * 119.99845 * 23 21 19 26 26 H 1.48494 * 109.47326 * 240.00182 * 23 21 19 27 27 C 1.33390 * 114.92061 * 0.24911 * 4 3 2 28 28 C 1.50702 * 125.20093 * 179.75319 * 27 4 3 29 29 S 1.75886 * 125.19888 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.47162 * 89.99544 * 1 2 3 31 31 H 1.09000 * 109.47239 * 210.00397 * 1 2 3 32 32 H 1.09002 * 109.46326 * 329.99725 * 1 2 3 33 33 H 1.07993 * 122.54081 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.47050 * 180.02562 * 7 5 4 35 35 H 1.09001 * 109.46801 * 300.00442 * 7 5 4 36 36 H 1.09001 * 109.46998 * 60.00038 * 7 5 4 37 37 H 0.97005 * 120.00153 * 334.99428 * 8 5 4 38 38 H 1.08000 * 118.67927 * 180.02562 * 11 10 9 39 39 H 1.08003 * 125.76829 * 0.02562 * 15 14 9 40 40 H 1.08994 * 109.47534 * 209.99915 * 18 17 13 41 41 H 1.08999 * 109.47199 * 330.00311 * 18 17 13 42 42 H 0.97005 * 119.99623 * 179.97438 * 22 21 19 43 43 H 1.08996 * 109.46725 * 90.00232 * 28 27 4 44 44 H 1.09003 * 109.46854 * 210.00347 * 28 27 4 45 45 H 1.09001 * 109.46911 * 330.00192 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6381 0.8428 -0.0006 5 6 4.6624 1.9481 -0.0012 6 1 5.5272 1.6423 0.5875 7 6 5.1002 2.2369 -1.4386 8 7 4.0767 3.1570 0.5831 9 6 4.8923 4.1086 1.1631 10 7 6.2102 3.9440 1.2005 11 6 6.9976 4.8497 1.7530 12 7 6.5360 5.9564 2.2932 13 6 5.2291 6.2130 2.3054 14 6 4.3481 5.2798 1.7246 15 6 3.0430 5.7980 1.8689 16 7 3.1199 6.9458 2.4796 17 7 4.4587 7.2362 2.7720 18 6 4.9477 8.4381 3.4519 19 6 5.2338 9.5105 2.4326 20 1 5.0684 9.3162 1.3832 21 6 5.7079 10.7396 2.8396 22 7 5.9098 10.9762 4.1175 23 14 6.0619 12.0693 1.5762 24 1 5.7537 11.5556 0.2174 25 1 5.2187 13.2584 1.8595 26 1 7.4953 12.4506 1.6473 27 6 3.9751 -0.4479 -0.0063 28 6 5.3860 -0.9772 -0.0134 29 16 2.5209 -1.4373 -0.0006 30 1 -0.3633 0.0001 -1.0276 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3632 0.8900 0.5139 33 1 1.8669 2.0894 0.0004 34 1 5.8414 3.0361 -1.4390 35 1 5.5360 1.3373 -1.8733 36 1 4.2353 2.5427 -2.0273 37 1 3.1159 3.2892 0.5626 38 1 8.0633 4.6747 1.7606 39 1 2.1341 5.3226 1.5308 40 1 4.1906 8.7938 4.1507 41 1 5.8618 8.2011 3.9963 42 1 6.2436 11.8409 4.4038 43 1 5.7300 -1.1084 1.0125 44 1 5.4116 -1.9363 -0.5307 45 1 6.0369 -0.2698 -0.5272 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097200080.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:53 Heat of formation + Delta-G solvation = 123.148258 kcal Electronic energy + Delta-G solvation = -28397.354958 eV Core-core repulsion = 24542.146153 eV Total energy + Delta-G solvation = -3855.208805 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 357.132 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.82524 -40.47325 -39.57065 -37.17884 -35.74814 -34.56493 -33.64914 -32.91517 -31.87998 -30.23797 -29.93424 -29.07332 -26.02661 -25.54670 -25.36674 -24.44925 -23.54582 -22.21554 -21.52732 -19.60348 -19.22395 -18.81918 -18.48465 -17.87190 -17.65203 -16.82195 -16.67691 -16.22070 -15.63942 -15.42349 -15.27922 -15.07794 -15.02739 -14.88950 -14.40381 -14.28607 -14.10148 -13.89084 -13.85553 -13.70411 -13.65520 -13.05378 -13.03312 -12.91724 -12.75854 -12.61091 -12.42846 -12.35748 -12.30582 -12.15569 -11.98410 -11.77491 -11.52624 -11.47394 -10.76022 -10.63848 -10.05223 -9.78245 -9.35214 -9.23379 -8.98639 -8.35593 -6.52479 -0.03172 0.05186 0.53285 0.67350 1.03185 1.32781 1.35015 1.39749 1.50636 1.63295 1.67452 2.04802 2.31653 2.94033 3.02440 3.27783 3.40947 3.64501 3.73753 3.78336 3.91474 4.09299 4.15766 4.35432 4.38736 4.43533 4.45655 4.53648 4.73337 4.75410 4.76632 4.81369 4.85982 4.86353 4.96200 5.06803 5.13741 5.16642 5.28850 5.32002 5.44833 5.47915 5.55593 5.57607 5.75968 5.78090 5.99326 6.13168 6.52717 6.57140 6.77664 7.17046 7.46344 8.72246 Molecular weight = 357.13amu Principal moments of inertia in cm(-1) A = 0.019306 B = 0.002185 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.971726 B =12814.268691 C =13495.315271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.181 4.181 3 C -0.147 4.147 4 C -0.121 4.121 5 C 0.219 3.781 6 H 0.096 0.904 7 C -0.151 4.151 8 N -0.679 5.679 9 C 0.522 3.478 10 N -0.611 5.611 11 C 0.376 3.624 12 N -0.605 5.605 13 C 0.338 3.662 14 C -0.346 4.346 15 C 0.099 3.901 16 N -0.289 5.289 17 N -0.367 5.367 18 C 0.285 3.715 19 C -0.550 4.550 20 H 0.045 0.955 21 C 0.019 3.981 22 N -0.919 5.919 23 Si 0.976 3.024 24 H -0.274 1.274 25 H -0.267 1.267 26 H -0.269 1.269 27 C -0.176 4.176 28 C -0.089 4.089 29 S 0.100 5.900 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.148 0.852 34 H 0.053 0.947 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.418 0.582 38 H 0.231 0.769 39 H 0.237 0.763 40 H 0.031 0.969 41 H 0.033 0.967 42 H 0.274 0.726 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.897 -28.905 -11.884 32.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.298 4.298 3 C -0.176 4.176 4 C -0.133 4.133 5 C 0.112 3.888 6 H 0.114 0.886 7 C -0.209 4.209 8 N -0.312 5.312 9 C 0.267 3.733 10 N -0.341 5.341 11 C 0.084 3.916 12 N -0.332 5.332 13 C 0.091 3.909 14 C -0.364 4.364 15 C -0.096 4.096 16 N -0.104 5.104 17 N -0.153 5.153 18 C 0.166 3.834 19 C -0.588 4.588 20 H 0.063 0.937 21 C -0.182 4.182 22 N -0.558 5.558 23 Si 0.799 3.201 24 H -0.199 1.199 25 H -0.192 1.192 26 H -0.194 1.194 27 C -0.294 4.294 28 C -0.148 4.148 29 S 0.365 5.635 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.105 0.895 33 H 0.165 0.835 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.258 0.742 38 H 0.247 0.753 39 H 0.253 0.747 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.083 0.917 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.786 -29.389 -11.188 32.171 hybrid contribution -0.177 2.235 -0.359 2.271 sum -6.963 -27.154 -11.546 30.317 Atomic orbital electron populations 1.20442 0.86254 1.04008 1.03617 1.24695 1.01039 0.95286 1.08783 1.19925 0.92112 1.00015 1.05573 1.18791 0.94540 0.93751 1.06211 1.19475 0.93812 0.80418 0.95050 0.88602 1.22105 1.01503 1.02610 0.94728 1.44577 1.08526 1.18711 1.59399 1.17952 0.88361 0.83864 0.83088 1.68092 1.02184 1.34222 1.29644 1.25196 1.01103 0.81285 0.84037 1.67531 1.12323 1.25085 1.28269 1.19346 0.90271 0.88701 0.92546 1.19734 0.96114 1.01383 1.19175 1.24231 0.97552 0.91438 0.96390 1.76886 0.96690 1.17588 1.19238 1.49096 1.02146 1.16952 1.47125 1.19117 0.93807 0.78596 0.91898 1.21404 1.46155 0.98331 0.92948 0.93676 1.25805 0.94143 1.00366 0.97874 1.70023 1.44988 1.24837 1.15935 0.85245 0.78519 0.78082 0.78206 1.19895 1.19233 1.19374 1.24429 1.00271 0.95513 1.09150 1.20492 0.88674 1.02062 1.03528 1.84211 0.96109 1.09480 1.73719 0.89754 0.90768 0.89526 0.83463 0.92810 0.90032 0.92377 0.74224 0.75278 0.74699 0.95127 0.94933 0.91700 0.90211 0.90059 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.38 71.24 0.74 -0.01 16 2 C -0.18 -2.44 6.51 24.59 0.16 -2.28 16 3 C -0.15 -2.12 9.22 21.22 0.20 -1.92 16 4 C -0.12 -1.90 4.96 -20.92 -0.10 -2.01 16 5 C 0.22 3.81 2.27 44.25 0.10 3.91 16 6 H 0.10 1.86 6.95 -2.39 -0.02 1.85 16 7 C -0.15 -2.46 9.42 71.98 0.68 -1.78 16 8 N -0.68 -13.80 5.14 -327.05 -1.68 -15.48 16 9 C 0.52 15.15 7.53 133.64 1.01 16.16 16 10 N -0.61 -18.06 9.34 -197.01 -1.84 -19.90 16 11 C 0.38 12.25 12.24 180.87 2.21 14.46 16 12 N -0.60 -26.14 10.47 -198.11 -2.07 -28.22 16 13 C 0.34 15.42 8.04 134.14 1.08 16.50 16 14 C -0.35 -12.38 6.14 -21.29 -0.13 -12.51 16 15 C 0.10 3.25 11.87 85.65 1.02 4.26 16 16 N -0.29 -12.72 12.45 -56.46 -0.70 -13.42 16 17 N -0.37 -18.55 3.63 -348.96 -1.27 -19.82 16 18 C 0.28 16.35 6.19 85.63 0.53 16.88 16 19 C -0.55 -33.05 9.39 25.60 0.24 -32.81 16 20 H 0.04 2.79 7.81 -2.91 -0.02 2.77 16 21 C 0.02 1.09 5.46 84.65 0.46 1.55 16 22 N -0.92 -54.92 13.29 21.45 0.28 -54.64 16 23 Si 0.98 45.33 29.54 68.60 2.03 47.35 16 24 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 25 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 27 C -0.18 -2.57 6.51 24.59 0.16 -2.41 16 28 C -0.09 -0.96 9.79 71.24 0.70 -0.26 16 29 S 0.10 1.35 23.31 -56.49 -1.32 0.04 16 30 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.09 0.63 8.14 -2.39 -0.02 0.62 16 33 H 0.15 1.67 6.52 -2.91 -0.02 1.66 16 34 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 1.06 7.26 -2.39 -0.02 1.04 16 36 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.42 6.70 6.40 -92.70 -0.59 6.11 16 38 H 0.23 5.36 8.06 -2.91 -0.02 5.34 16 39 H 0.24 4.61 8.06 -2.91 -0.02 4.58 16 40 H 0.03 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.03 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.27 15.11 8.31 -92.70 -0.77 14.34 16 43 H 0.08 0.83 8.14 -2.39 -0.02 0.82 16 44 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.09 0.85 6.49 -2.39 -0.02 0.83 16 Total: -1.00 -76.08 393.55 2.92 -73.16 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: 0.44 Total: 13.20 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 9.04 Total: 17.72 kcal Atomic # 7 Polarization: -144.19 SS G_CDS: -7.28 Total: -151.47 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Atomic # 16 Polarization: 1.35 SS G_CDS: -1.32 Total: 0.04 kcal Total: -76.08 2.92 -73.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200080.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.308 kcal (2) G-P(sol) polarization free energy of solvation -76.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds