Wall clock time and date at job start Tue Mar 31 2020 04:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33394 * 125.20568 * 2 1 4 4 C 1.38423 * 114.92457 * 180.20379 * 3 2 1 5 5 C 1.50700 * 122.54134 * 179.76187 * 4 3 2 6 6 H 1.08996 * 109.47170 * 219.71837 * 5 4 3 7 7 C 1.52996 * 109.46842 * 99.71492 * 5 4 3 8 8 N 1.46493 * 109.46896 * 339.71543 * 5 4 3 9 9 C 1.38115 * 120.00063 * 204.99920 * 8 5 4 10 10 N 1.32865 * 120.80616 * 359.44393 * 9 8 5 11 11 C 1.32130 * 121.18734 * 179.69297 * 10 9 8 12 12 N 1.31499 * 122.64483 * 0.64453 * 11 10 9 13 13 C 1.33201 * 120.68758 * 359.66171 * 12 11 10 14 14 C 1.40812 * 120.81346 * 179.72801 * 9 8 5 15 15 C 1.41163 * 134.70664 * 0.02562 * 14 9 8 16 16 N 1.30246 * 108.47512 * 179.97438 * 15 14 9 17 17 N 1.36314 * 134.61581 * 179.97438 * 13 12 11 18 18 C 1.46495 * 125.87315 * 0.02562 * 17 13 12 19 19 C 1.50701 * 109.47691 * 89.99816 * 18 17 13 20 20 H 1.08003 * 119.99063 * 359.97438 * 19 18 17 21 21 C 1.37872 * 120.00186 * 179.97438 * 19 18 17 22 22 N 1.31513 * 120.00182 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 119.99660 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47355 * 59.99753 * 23 21 19 25 25 H 1.48497 * 109.46966 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.47285 * 300.00001 * 23 21 19 27 27 C 1.33390 * 114.91370 * 359.49893 * 4 3 2 28 28 C 1.50708 * 125.20026 * 180.28557 * 27 4 3 29 29 S 1.75880 * 109.60082 * 0.26623 * 27 4 3 30 30 H 1.08998 * 109.47354 * 180.28187 * 1 2 3 31 31 H 1.09001 * 109.47437 * 300.28949 * 1 2 3 32 32 H 1.09006 * 109.47402 * 60.28549 * 1 2 3 33 33 H 1.08000 * 122.53745 * 359.97378 * 3 2 1 34 34 H 1.09003 * 109.47116 * 60.00282 * 7 5 4 35 35 H 1.09004 * 109.47038 * 179.97438 * 7 5 4 36 36 H 1.08996 * 109.47520 * 300.00130 * 7 5 4 37 37 H 0.97000 * 120.00740 * 24.72532 * 8 5 4 38 38 H 1.08000 * 118.67360 * 180.32902 * 11 10 9 39 39 H 1.07999 * 125.75985 * 359.96556 * 15 14 9 40 40 H 1.09000 * 109.47397 * 209.99758 * 18 17 13 41 41 H 1.09008 * 109.47292 * 329.99248 * 18 17 13 42 42 H 0.96997 * 119.99551 * 180.02562 * 22 21 19 43 43 H 1.08997 * 109.46610 * 89.99722 * 28 27 4 44 44 H 1.08992 * 109.47347 * 209.99933 * 28 27 4 45 45 H 1.09004 * 109.47055 * 330.00171 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8429 -0.0045 5 6 4.6623 1.9482 -0.0105 6 1 5.4866 1.6761 -0.6696 7 6 5.1926 2.1597 1.4090 8 7 4.0422 3.1860 -0.4895 9 6 4.8205 4.1689 -1.0690 10 7 6.1344 4.0134 -1.1900 11 6 6.8853 4.9462 -1.7485 12 7 6.3910 6.0770 -2.2026 13 6 5.0856 6.3293 -2.1218 14 6 4.2416 5.3628 -1.5405 15 6 2.9291 5.8809 -1.5829 16 7 2.9677 7.0575 -2.1401 17 7 4.2875 7.3721 -2.4879 18 6 4.7335 8.6085 -3.1346 19 6 4.6919 8.4361 -4.6312 20 1 4.3662 7.4989 -5.0578 21 6 5.0696 9.4747 -5.4556 22 7 5.4667 10.6157 -4.9360 23 14 5.0186 9.2605 -7.3106 24 1 3.6295 8.9522 -7.7353 25 1 5.4706 10.5140 -7.9661 26 1 5.9158 8.1449 -7.7050 27 6 3.9750 -0.4477 0.0025 28 6 5.3860 -0.9771 0.0058 29 16 2.5209 -1.4372 0.0078 30 1 -0.3634 -1.0276 0.0051 31 1 -0.3634 0.5183 0.8874 32 1 -0.3634 0.5094 -0.8926 33 1 1.8669 2.0895 -0.0004 34 1 5.6540 1.2387 1.7654 35 1 5.9339 2.9589 1.4046 36 1 4.3683 2.4318 2.0681 37 1 3.0845 3.3136 -0.4035 38 1 7.9484 4.7751 -1.8308 39 1 2.0427 5.3852 -1.2155 40 1 4.0756 9.4279 -2.8449 41 1 5.7535 8.8341 -2.8231 42 1 5.7320 11.3464 -5.5161 43 1 5.7257 -1.0992 1.0342 44 1 5.4138 -1.9407 -0.5029 45 1 6.0390 -0.2742 -0.5115 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200081.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:57 Heat of formation + Delta-G solvation = 141.728764 kcal Electronic energy + Delta-G solvation = -28416.948673 eV Core-core repulsion = 24562.545579 eV Total energy + Delta-G solvation = -3854.403094 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 357.132 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.38575 -39.62405 -38.28354 -36.13393 -33.99008 -33.55545 -32.31817 -31.27661 -30.72837 -29.72998 -28.72126 -27.16636 -25.33180 -24.32642 -23.85587 -23.09700 -22.30203 -21.43028 -20.06185 -18.67979 -17.91939 -17.57950 -16.82072 -16.63253 -16.47693 -15.51615 -15.17584 -14.85650 -14.66054 -14.56624 -14.10457 -13.92913 -13.74890 -13.72327 -13.55197 -13.37267 -13.24253 -13.15750 -12.90950 -12.40952 -12.16739 -12.13257 -11.82776 -11.78360 -11.64460 -11.40397 -11.17361 -10.98450 -10.96596 -10.81495 -10.72112 -10.27548 -10.06638 -9.84729 -9.26277 -8.73299 -8.65475 -8.59665 -8.57749 -8.20697 -7.61968 -6.20459 -4.26956 0.67163 1.27791 1.33471 1.64563 1.96162 2.34857 2.95376 3.05622 3.15097 3.27454 3.30373 3.35549 4.32350 4.37825 4.42399 4.48165 4.57520 4.74977 4.77823 4.93815 4.95955 5.02377 5.11008 5.14680 5.15355 5.17018 5.17603 5.24826 5.33304 5.48438 5.52810 5.62082 5.65275 5.70353 5.75676 5.86804 6.02185 6.10578 6.19669 6.38425 6.70965 6.94712 7.04583 7.12001 7.27661 7.51830 7.73588 7.92007 7.94248 8.24573 8.73196 8.84743 9.37958 10.87744 Molecular weight = 357.13amu Principal moments of inertia in cm(-1) A = 0.015574 B = 0.002262 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.487190 B =12375.447717 C =12924.640762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.175 4.175 3 C -0.133 4.133 4 C -0.108 4.108 5 C 0.216 3.784 6 H 0.103 0.897 7 C -0.155 4.155 8 N -0.701 5.701 9 C 0.512 3.488 10 N -0.618 5.618 11 C 0.367 3.633 12 N -0.555 5.555 13 C 0.364 3.636 14 C -0.338 4.338 15 C 0.068 3.932 16 N -0.243 5.243 17 N -0.332 5.332 18 C 0.264 3.736 19 C -0.534 4.534 20 H 0.061 0.939 21 C 0.067 3.933 22 N -0.891 5.891 23 Si 0.907 3.093 24 H -0.275 1.275 25 H -0.283 1.283 26 H -0.274 1.274 27 C -0.172 4.172 28 C -0.086 4.086 29 S 0.095 5.905 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.137 0.863 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.407 0.593 38 H 0.195 0.805 39 H 0.181 0.819 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.268 0.732 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.789 -24.785 14.195 28.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.292 4.292 3 C -0.163 4.163 4 C -0.121 4.121 5 C 0.109 3.891 6 H 0.121 0.879 7 C -0.214 4.214 8 N -0.335 5.335 9 C 0.260 3.740 10 N -0.349 5.349 11 C 0.073 3.927 12 N -0.279 5.279 13 C 0.116 3.884 14 C -0.355 4.355 15 C -0.127 4.127 16 N -0.059 5.059 17 N -0.119 5.119 18 C 0.147 3.853 19 C -0.572 4.572 20 H 0.079 0.921 21 C -0.137 4.137 22 N -0.529 5.529 23 Si 0.734 3.266 24 H -0.200 1.200 25 H -0.209 1.209 26 H -0.200 1.200 27 C -0.289 4.289 28 C -0.144 4.144 29 S 0.361 5.639 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.154 0.846 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.245 0.755 38 H 0.211 0.789 39 H 0.198 0.802 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -4.665 -25.105 13.618 28.939 hybrid contribution -0.581 1.029 -0.775 1.414 sum -5.246 -24.076 12.843 27.787 Atomic orbital electron populations 1.20345 0.87715 1.02872 1.03226 1.24373 0.99906 0.95505 1.09442 1.19725 0.92263 0.99222 1.05124 1.18850 0.94490 0.93948 1.04778 1.19436 0.92991 0.80372 0.96337 0.87944 1.22142 1.01445 1.02491 0.95302 1.44486 1.09213 1.16143 1.63708 1.17878 0.88145 0.84094 0.83912 1.67940 1.03360 1.35044 1.28510 1.24406 0.99445 0.82540 0.86348 1.67509 1.11211 1.23419 1.25807 1.18932 0.89157 0.88224 0.92076 1.19602 0.96552 0.99711 1.19685 1.23339 0.95828 0.93379 1.00179 1.76936 0.98758 1.15411 1.14787 1.49451 1.01038 1.15529 1.45840 1.19784 0.96424 0.76594 0.92474 1.21209 1.46207 1.00066 0.89750 0.92122 1.24891 0.94469 0.94678 0.99612 1.69908 1.43532 1.03497 1.35992 0.86406 0.78673 0.77602 0.83931 1.20031 1.20886 1.19955 1.24121 0.99246 0.95478 1.10072 1.20404 0.89678 1.01459 1.02882 1.84206 0.96285 1.09474 1.73982 0.91524 0.90442 0.90334 0.84592 0.91755 0.91192 0.92677 0.75525 0.78894 0.80243 0.92834 0.92258 0.92215 0.90517 0.91320 0.89925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.38 36.00 0.37 -0.11 16 2 C -0.18 -1.43 6.51 -36.00 -0.23 -1.67 16 3 C -0.13 -1.17 9.25 -41.21 -0.38 -1.55 16 4 C -0.11 -1.01 4.98 -106.25 -0.53 -1.53 16 5 C 0.22 2.15 2.47 -69.09 -0.17 1.98 16 6 H 0.10 1.13 6.44 -51.93 -0.33 0.80 16 7 C -0.15 -1.41 9.48 37.16 0.35 -1.06 16 8 N -0.70 -8.06 5.12 -54.73 -0.28 -8.34 16 9 C 0.51 7.89 7.53 -154.84 -1.17 6.72 16 10 N -0.62 -9.62 9.35 -13.62 -0.13 -9.74 16 11 C 0.37 6.10 12.24 -92.12 -1.13 4.97 16 12 N -0.55 -11.70 10.47 -13.97 -0.15 -11.84 16 13 C 0.36 8.06 8.04 -156.23 -1.26 6.81 16 14 C -0.34 -6.16 6.14 -106.82 -0.66 -6.81 16 15 C 0.07 1.16 11.87 -17.11 -0.20 0.95 16 16 N -0.24 -5.24 12.45 30.80 0.38 -4.85 16 17 N -0.33 -8.00 3.63 -61.64 -0.22 -8.23 16 18 C 0.26 7.10 6.19 -5.20 -0.03 7.06 16 19 C -0.53 -15.35 9.39 -34.44 -0.32 -15.67 16 20 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 21 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 22 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 23 Si 0.91 21.83 29.54 -169.99 -5.02 16.81 16 24 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 27 C -0.17 -1.47 6.50 -36.00 -0.23 -1.70 16 28 C -0.09 -0.56 9.80 36.01 0.35 -0.21 16 29 S 0.10 0.77 23.31 -107.50 -2.51 -1.74 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.14 1.01 6.36 -52.49 -0.33 0.68 16 34 H 0.06 0.49 7.89 -51.93 -0.41 0.08 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.41 3.95 6.28 -40.82 -0.26 3.69 16 38 H 0.19 2.42 8.06 -52.49 -0.42 1.99 16 39 H 0.18 2.10 8.06 -52.49 -0.42 1.68 16 40 H 0.05 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.06 1.67 8.14 -51.92 -0.42 1.24 16 42 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.08 0.55 6.85 -51.93 -0.36 0.19 16 LS Contribution 394.04 15.07 5.94 5.94 Total: -1.00 -33.24 394.04 -12.47 -45.71 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.89 Total: 1.50 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -5.33 Total: -0.03 kcal Atomic # 7 Polarization: -68.52 SS G_CDS: 0.34 Total: -68.18 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 0.77 SS G_CDS: -2.51 Total: -1.74 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.24 -12.47 -45.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200081.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.434 kcal (2) G-P(sol) polarization free energy of solvation -33.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds