Wall clock time and date at job start Tue Mar 31 2020 04:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34759 * 116.99968 * 2 1 4 4 O 1.21512 * 119.99819 * 359.97438 * 3 2 1 5 5 C 1.47349 * 119.99922 * 179.72131 * 3 2 1 6 6 C 1.37893 * 126.78371 * 359.68607 * 5 3 2 7 7 O 1.33479 * 108.33590 * 179.83162 * 6 5 3 8 8 C 1.34887 * 109.90322 * 0.44310 * 7 6 5 9 9 C 1.46741 * 125.64553 * 179.72277 * 8 7 6 10 10 O 1.21694 * 119.99912 * 174.91609 * 9 8 7 11 11 N 1.34777 * 119.99931 * 354.92174 * 9 8 7 12 12 C 1.46489 * 119.99998 * 3.03661 * 11 9 8 13 13 C 1.50702 * 109.47426 * 83.33982 * 12 11 9 14 14 H 1.08002 * 119.99572 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00288 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99690 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99976 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47271 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47202 * 119.99847 * 17 15 13 20 20 H 1.48496 * 109.47351 * 239.99876 * 17 15 13 21 21 C 1.39837 * 119.99558 * 183.04038 * 11 9 8 22 22 C 1.38914 * 120.07055 * 172.21178 * 21 11 9 23 23 C 1.38079 * 119.92952 * 179.97438 * 22 21 11 24 24 C 1.38310 * 120.07034 * 359.97438 * 23 22 21 25 25 C 1.50705 * 119.92428 * 180.02562 * 24 23 22 26 26 C 1.38260 * 120.14689 * 0.02562 * 24 23 22 27 27 C 1.50703 * 119.96324 * 179.97438 * 26 24 23 28 28 C 1.38125 * 120.07064 * 359.74547 * 26 24 23 29 29 C 1.36060 * 108.70778 * 359.72550 * 8 7 6 30 30 H 1.08995 * 109.47314 * 300.00507 * 1 2 3 31 31 H 1.09005 * 109.46679 * 60.00078 * 1 2 3 32 32 H 1.08992 * 109.46981 * 180.02562 * 1 2 3 33 33 H 1.08000 * 125.83353 * 359.95944 * 6 5 3 34 34 H 1.09009 * 109.47302 * 203.34120 * 12 11 9 35 35 H 1.09003 * 109.47651 * 323.33544 * 12 11 9 36 36 H 0.97000 * 119.99542 * 180.02562 * 16 15 13 37 37 H 1.08005 * 120.03560 * 0.02562 * 22 21 11 38 38 H 1.07998 * 119.96427 * 180.02562 * 23 22 21 39 39 H 1.09007 * 109.46626 * 90.01245 * 25 24 23 40 40 H 1.09002 * 109.47059 * 210.00149 * 25 24 23 41 41 H 1.08998 * 109.47162 * 330.00583 * 25 24 23 42 42 H 1.08994 * 109.47010 * 90.00460 * 27 26 24 43 43 H 1.09003 * 109.46891 * 210.00113 * 27 26 24 44 44 H 1.09003 * 109.47266 * 329.99684 * 27 26 24 45 45 H 1.08007 * 120.03777 * 180.27352 * 28 26 24 46 46 H 1.08001 * 126.69236 * 179.97438 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2198 -0.0005 5 6 3.5352 1.2778 0.0062 6 6 4.4176 0.2182 0.0184 7 8 5.6599 0.7062 0.0167 8 6 5.6236 2.0546 0.0135 9 6 6.7926 2.9416 0.0167 10 8 6.6433 4.1454 -0.0801 11 7 8.0317 2.4229 0.1265 12 6 8.2161 0.9705 0.1759 13 6 8.2270 0.4175 -1.2260 14 1 8.1088 1.0818 -2.0694 15 6 8.3888 -0.9361 -1.4320 16 7 8.5332 -1.7448 -0.4049 17 14 8.4016 -1.6215 -3.1696 18 1 8.2213 -0.5124 -4.1405 19 1 9.6990 -2.2970 -3.4258 20 1 7.2952 -2.5999 -3.3239 21 6 9.1413 3.2713 0.1936 22 6 10.3997 2.7511 0.4685 23 6 11.4934 3.5914 0.5334 24 6 11.3371 4.9497 0.3246 25 6 12.5332 5.8638 0.3957 26 6 10.0861 5.4707 0.0508 27 6 9.9204 6.9514 -0.1755 28 6 8.9887 4.6349 -0.0203 29 6 4.3236 2.4561 0.0070 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 4.1492 -0.8279 0.0258 34 1 9.1631 0.7408 0.6644 35 1 7.3985 0.5192 0.7381 36 1 8.6474 -2.6971 -0.5499 37 1 10.5226 1.6903 0.6304 38 1 12.4720 3.1875 0.7467 39 1 12.9849 5.9485 -0.5927 40 1 12.2172 6.8498 0.7364 41 1 13.2624 5.4543 1.0947 42 1 10.0441 7.1730 -1.2355 43 1 8.9255 7.2591 0.1463 44 1 10.6718 7.4931 0.3991 45 1 8.0123 5.0419 -0.2386 46 1 3.9626 3.4740 0.0036 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097376433.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:47 Heat of formation + Delta-G solvation = -56.953623 kcal Electronic energy + Delta-G solvation = -31694.450188 eV Core-core repulsion = 27324.093206 eV Total energy + Delta-G solvation = -4370.356982 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.57119 -40.28564 -40.03935 -38.28360 -36.41596 -35.77884 -33.08710 -32.95469 -32.08223 -31.58618 -30.00259 -28.04870 -27.80613 -26.60136 -25.99663 -23.84093 -23.55322 -22.85177 -21.74184 -20.69710 -20.24855 -19.29529 -17.65984 -17.12752 -16.88635 -16.67874 -16.44033 -16.22017 -15.79389 -15.73772 -15.11207 -14.76162 -14.59498 -14.49521 -13.88470 -13.63730 -13.41331 -13.31012 -13.18482 -12.97571 -12.76856 -12.65059 -12.55493 -12.50243 -12.27745 -12.06513 -11.82305 -11.66026 -11.36891 -11.26441 -11.04715 -10.88591 -10.82751 -10.61843 -10.50910 -10.26950 -10.09211 -9.90103 -9.16363 -9.04324 -8.65352 -8.59215 -8.22084 -7.19754 -6.28295 -4.34762 1.16457 1.42651 1.90860 1.99102 2.60810 2.91122 3.08872 3.15311 3.24772 3.29763 3.52465 3.57755 4.23400 4.35479 4.61715 4.76041 4.98328 4.99747 5.05769 5.05905 5.17155 5.23987 5.33047 5.40091 5.45721 5.56850 5.63094 5.69491 5.71264 5.89503 5.92715 5.94490 6.03929 6.06140 6.17269 6.22833 6.26721 6.31989 6.46832 6.71710 6.80685 6.89008 7.01517 7.09896 7.19689 7.21427 7.63407 7.72418 7.76158 7.86883 7.90906 8.47328 8.70455 9.31402 10.78631 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.009057 B = 0.003488 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3090.912260 B = 8025.402428 C =10526.133492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.358 6.358 3 C 0.543 3.457 4 O -0.510 6.510 5 C -0.252 4.252 6 C 0.079 3.921 7 O -0.091 6.091 8 C -0.056 4.056 9 C 0.600 3.400 10 O -0.523 6.523 11 N -0.522 5.522 12 C 0.220 3.780 13 C -0.530 4.530 14 H 0.061 0.939 15 C 0.072 3.928 16 N -0.888 5.888 17 Si 0.894 3.106 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.281 1.281 21 C 0.167 3.833 22 C -0.146 4.146 23 C -0.098 4.098 24 C -0.126 4.126 25 C -0.108 4.108 26 C -0.075 4.075 27 C -0.111 4.111 28 C -0.170 4.170 29 C -0.081 4.081 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.221 0.779 34 H 0.053 0.947 35 H 0.060 0.940 36 H 0.266 0.734 37 H 0.136 0.864 38 H 0.119 0.881 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.065 0.935 45 H 0.178 0.822 46 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.398 5.102 3.014 7.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.274 6.274 3 C 0.389 3.611 4 O -0.399 6.399 5 C -0.254 4.254 6 C 0.003 3.997 7 O 0.019 5.981 8 C -0.108 4.108 9 C 0.391 3.609 10 O -0.405 6.405 11 N -0.240 5.240 12 C 0.103 3.897 13 C -0.569 4.569 14 H 0.079 0.921 15 C -0.132 4.132 16 N -0.526 5.526 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.207 1.207 21 C 0.072 3.928 22 C -0.166 4.166 23 C -0.117 4.117 24 C -0.127 4.127 25 C -0.164 4.164 26 C -0.075 4.075 27 C -0.167 4.167 28 C -0.189 4.189 29 C -0.101 4.101 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.238 0.762 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.153 0.847 38 H 0.137 0.863 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.194 0.806 46 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -4.411 5.581 3.019 7.728 hybrid contribution -0.307 -0.861 -1.060 1.400 sum -4.718 4.720 1.958 6.955 Atomic orbital electron populations 1.23252 0.76030 1.03647 1.02587 1.86551 1.23516 1.32673 1.84704 1.20042 0.87509 0.81315 0.72223 1.90831 1.66490 1.35991 1.46600 1.19550 0.90400 0.94571 1.20915 1.25498 0.81275 0.99732 0.93159 1.84743 1.27630 1.19951 1.65727 1.21694 0.95078 0.81028 1.12990 1.16712 0.81433 0.85714 0.77081 1.90467 1.84694 1.13264 1.52069 1.45869 1.03485 1.10430 1.64183 1.20038 0.99649 0.70838 0.99223 1.21305 1.51320 0.92750 0.91491 0.92087 1.24816 0.94538 0.96525 0.97280 1.69923 1.48624 1.04279 1.29771 0.86493 0.77915 0.79117 0.84377 1.19662 1.20710 1.20668 1.17934 0.86933 0.89890 0.98086 1.21041 0.91027 1.00883 1.03616 1.20696 0.97901 0.92511 1.00607 1.19633 0.94537 0.94257 1.04310 1.20742 0.95577 0.98547 1.01550 1.19618 0.92429 0.95681 0.99806 1.20784 1.02242 0.92081 1.01618 1.22491 1.02084 0.91826 1.02547 1.21608 0.89794 0.99430 0.99282 0.91876 0.91866 0.88011 0.76244 0.92884 0.92295 0.92466 0.84671 0.86328 0.91934 0.91758 0.92264 0.91616 0.91729 0.91669 0.80569 0.81517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.57 101.05 1.07 1.42 16 2 O -0.36 -4.53 10.41 -40.65 -0.42 -4.95 16 3 C 0.54 8.29 7.96 34.44 0.27 8.56 16 4 O -0.51 -8.84 16.73 -19.27 -0.32 -9.16 16 5 C -0.25 -3.99 6.16 -104.97 -0.65 -4.64 16 6 C 0.08 1.21 11.98 30.61 0.37 1.58 16 7 O -0.09 -1.74 6.46 6.23 0.04 -1.70 16 8 C -0.06 -1.08 6.71 -36.93 -0.25 -1.32 16 9 C 0.60 12.53 7.53 -12.83 -0.10 12.44 16 10 O -0.52 -11.04 13.26 5.19 0.07 -10.97 16 11 N -0.52 -11.22 2.70 -116.18 -0.31 -11.54 16 12 C 0.22 5.06 4.51 -5.20 -0.02 5.04 16 13 C -0.53 -13.29 8.36 -34.44 -0.29 -13.58 16 14 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 15 C 0.07 1.80 5.46 -17.82 -0.10 1.71 16 16 N -0.89 -22.90 13.29 55.43 0.74 -22.17 16 17 Si 0.89 19.97 29.54 -169.99 -5.02 14.95 16 18 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 21 C 0.17 3.41 6.49 -83.72 -0.54 2.87 16 22 C -0.15 -2.76 9.29 -39.39 -0.37 -3.13 16 23 C -0.10 -1.60 9.69 -39.61 -0.38 -1.99 16 24 C -0.13 -1.94 5.88 -104.58 -0.62 -2.56 16 25 C -0.11 -1.24 9.60 36.01 0.35 -0.89 16 26 C -0.07 -1.22 5.88 -104.65 -0.62 -1.84 16 27 C -0.11 -1.42 9.60 36.01 0.35 -1.07 16 28 C -0.17 -3.26 8.68 -39.39 -0.34 -3.60 16 29 C -0.08 -1.39 10.41 -39.01 -0.41 -1.80 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.22 2.55 8.06 -52.49 -0.42 2.13 16 34 H 0.05 1.26 5.66 -51.92 -0.29 0.96 16 35 H 0.06 1.38 5.42 -51.93 -0.28 1.10 16 36 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 37 H 0.14 2.63 5.90 -52.48 -0.31 2.32 16 38 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.66 5.94 -51.93 -0.31 0.35 16 41 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 0.81 8.09 -51.93 -0.42 0.39 16 44 H 0.06 0.70 5.94 -51.93 -0.31 0.39 16 45 H 0.18 3.54 4.57 -56.07 -0.26 3.28 16 46 H 0.17 2.74 8.06 -52.49 -0.42 2.31 16 LS Contribution 389.03 15.07 5.86 5.86 Total: -1.00 -29.63 389.03 -7.17 -36.80 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.52 Total: 5.68 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -2.27 Total: -2.80 kcal Atomic # 7 Polarization: -34.13 SS G_CDS: 0.42 Total: -33.70 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.64 Total: -26.78 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.63 -7.17 -36.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097376433.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.156 kcal (2) G-P(sol) polarization free energy of solvation -29.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds