Wall clock time and date at job start Tue Mar 31 2020 04:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34759 * 116.99968 * 2 1 4 4 O 1.21512 * 119.99819 * 359.97438 * 3 2 1 5 5 C 1.47349 * 119.99922 * 179.72131 * 3 2 1 6 6 C 1.37893 * 126.78371 * 359.68607 * 5 3 2 7 7 O 1.33479 * 108.33590 * 179.83162 * 6 5 3 8 8 C 1.34887 * 109.90322 * 0.44310 * 7 6 5 9 9 C 1.46741 * 125.64553 * 179.72277 * 8 7 6 10 10 O 1.21694 * 119.99912 * 174.91609 * 9 8 7 11 11 N 1.34777 * 119.99931 * 354.92174 * 9 8 7 12 12 C 1.46489 * 119.99998 * 3.03661 * 11 9 8 13 13 C 1.50702 * 109.47426 * 83.33982 * 12 11 9 14 14 H 1.08002 * 119.99572 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00288 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99690 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99976 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.47271 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47202 * 119.99847 * 17 15 13 20 20 H 1.48496 * 109.47351 * 239.99876 * 17 15 13 21 21 C 1.39837 * 119.99558 * 183.04038 * 11 9 8 22 22 C 1.38914 * 120.07055 * 172.21178 * 21 11 9 23 23 C 1.38079 * 119.92952 * 179.97438 * 22 21 11 24 24 C 1.38310 * 120.07034 * 359.97438 * 23 22 21 25 25 C 1.50705 * 119.92428 * 180.02562 * 24 23 22 26 26 C 1.38260 * 120.14689 * 0.02562 * 24 23 22 27 27 C 1.50703 * 119.96324 * 179.97438 * 26 24 23 28 28 C 1.38125 * 120.07064 * 359.74547 * 26 24 23 29 29 C 1.36060 * 108.70778 * 359.72550 * 8 7 6 30 30 H 1.08995 * 109.47314 * 300.00507 * 1 2 3 31 31 H 1.09005 * 109.46679 * 60.00078 * 1 2 3 32 32 H 1.08992 * 109.46981 * 180.02562 * 1 2 3 33 33 H 1.08000 * 125.83353 * 359.95944 * 6 5 3 34 34 H 1.09009 * 109.47302 * 203.34120 * 12 11 9 35 35 H 1.09003 * 109.47651 * 323.33544 * 12 11 9 36 36 H 0.97000 * 119.99542 * 180.02562 * 16 15 13 37 37 H 1.08005 * 120.03560 * 0.02562 * 22 21 11 38 38 H 1.07998 * 119.96427 * 180.02562 * 23 22 21 39 39 H 1.09007 * 109.46626 * 90.01245 * 25 24 23 40 40 H 1.09002 * 109.47059 * 210.00149 * 25 24 23 41 41 H 1.08998 * 109.47162 * 330.00583 * 25 24 23 42 42 H 1.08994 * 109.47010 * 90.00460 * 27 26 24 43 43 H 1.09003 * 109.46891 * 210.00113 * 27 26 24 44 44 H 1.09003 * 109.47266 * 329.99684 * 27 26 24 45 45 H 1.08007 * 120.03777 * 180.27352 * 28 26 24 46 46 H 1.08001 * 126.69236 * 179.97438 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2198 -0.0005 5 6 3.5352 1.2778 0.0062 6 6 4.4176 0.2182 0.0184 7 8 5.6599 0.7062 0.0167 8 6 5.6236 2.0546 0.0135 9 6 6.7926 2.9416 0.0167 10 8 6.6433 4.1454 -0.0801 11 7 8.0317 2.4229 0.1265 12 6 8.2161 0.9705 0.1759 13 6 8.2270 0.4175 -1.2260 14 1 8.1088 1.0818 -2.0694 15 6 8.3888 -0.9361 -1.4320 16 7 8.5332 -1.7448 -0.4049 17 14 8.4016 -1.6215 -3.1696 18 1 8.2213 -0.5124 -4.1405 19 1 9.6990 -2.2970 -3.4258 20 1 7.2952 -2.5999 -3.3239 21 6 9.1413 3.2713 0.1936 22 6 10.3997 2.7511 0.4685 23 6 11.4934 3.5914 0.5334 24 6 11.3371 4.9497 0.3246 25 6 12.5332 5.8638 0.3957 26 6 10.0861 5.4707 0.0508 27 6 9.9204 6.9514 -0.1755 28 6 8.9887 4.6349 -0.0203 29 6 4.3236 2.4561 0.0070 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0276 0.0005 33 1 4.1492 -0.8279 0.0258 34 1 9.1631 0.7408 0.6644 35 1 7.3985 0.5192 0.7381 36 1 8.6474 -2.6971 -0.5499 37 1 10.5226 1.6903 0.6304 38 1 12.4720 3.1875 0.7467 39 1 12.9849 5.9485 -0.5927 40 1 12.2172 6.8498 0.7364 41 1 13.2624 5.4543 1.0947 42 1 10.0441 7.1730 -1.2355 43 1 8.9255 7.2591 0.1463 44 1 10.6718 7.4931 0.3991 45 1 8.0123 5.0419 -0.2386 46 1 3.9626 3.4740 0.0036 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097376433.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:58:46 Heat of formation + Delta-G solvation = -71.400842 kcal Electronic energy + Delta-G solvation = -31695.076666 eV Core-core repulsion = 27324.093206 eV Total energy + Delta-G solvation = -4370.983460 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.96383 -41.74642 -41.21871 -39.67826 -37.55329 -37.35580 -34.80892 -34.40107 -33.46616 -32.90524 -31.31749 -29.65480 -28.74652 -27.97744 -27.22939 -25.27884 -25.00241 -24.31741 -23.09890 -22.07775 -21.51825 -20.66037 -19.15220 -18.68657 -18.28753 -18.18628 -17.72177 -17.58697 -17.13297 -17.00578 -16.52128 -16.33041 -16.08270 -15.98664 -15.02283 -14.92279 -14.74189 -14.53050 -14.41271 -14.34607 -14.31785 -14.02453 -13.86490 -13.53576 -13.43265 -13.31145 -13.10182 -12.93345 -12.90900 -12.71150 -12.48221 -12.41167 -12.21122 -11.84933 -11.83901 -11.83311 -11.71361 -11.27078 -10.76687 -10.62220 -10.52728 -9.96919 -9.58226 -8.68741 -8.19870 -6.33906 -0.22430 0.12577 0.52916 0.61186 1.37175 1.41790 1.49229 1.51739 1.55533 1.80104 2.04583 2.09834 2.40451 2.93775 3.09309 3.33720 3.38391 3.75428 3.97250 4.04851 4.19803 4.21643 4.30788 4.33167 4.35613 4.35876 4.43065 4.53144 4.65428 4.71523 4.73298 4.78725 4.90005 4.90738 4.97929 5.01534 5.10102 5.18778 5.20804 5.26257 5.29001 5.41959 5.57215 5.65036 5.72028 5.79891 5.83982 5.96360 6.26798 6.30683 6.61255 6.71133 6.91399 7.34439 8.84994 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.009057 B = 0.003488 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3090.912260 B = 8025.402428 C =10526.133492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.550 3.450 4 O -0.535 6.535 5 C -0.257 4.257 6 C 0.099 3.901 7 O -0.116 6.116 8 C -0.085 4.085 9 C 0.591 3.409 10 O -0.536 6.536 11 N -0.529 5.529 12 C 0.236 3.764 13 C -0.535 4.535 14 H 0.039 0.961 15 C 0.040 3.960 16 N -0.908 5.908 17 Si 0.946 3.054 18 H -0.282 1.282 19 H -0.278 1.278 20 H -0.267 1.267 21 C 0.133 3.867 22 C -0.165 4.165 23 C -0.097 4.097 24 C -0.121 4.121 25 C -0.105 4.105 26 C -0.078 4.078 27 C -0.108 4.108 28 C -0.189 4.189 29 C -0.070 4.070 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.138 0.862 33 H 0.259 0.741 34 H 0.040 0.960 35 H 0.055 0.945 36 H 0.270 0.730 37 H 0.120 0.880 38 H 0.147 0.853 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.061 0.939 44 H 0.092 0.908 45 H 0.164 0.836 46 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.031 5.132 2.724 7.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.270 6.270 3 C 0.397 3.603 4 O -0.427 6.427 5 C -0.260 4.260 6 C 0.024 3.976 7 O -0.007 6.007 8 C -0.136 4.136 9 C 0.383 3.617 10 O -0.419 6.419 11 N -0.247 5.247 12 C 0.118 3.882 13 C -0.573 4.573 14 H 0.057 0.943 15 C -0.162 4.162 16 N -0.546 5.546 17 Si 0.771 3.229 18 H -0.208 1.208 19 H -0.203 1.203 20 H -0.192 1.192 21 C 0.038 3.962 22 C -0.185 4.185 23 C -0.116 4.116 24 C -0.122 4.122 25 C -0.161 4.161 26 C -0.079 4.079 27 C -0.165 4.165 28 C -0.208 4.208 29 C -0.090 4.090 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.156 0.844 33 H 0.275 0.725 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.138 0.862 38 H 0.164 0.836 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.111 0.889 45 H 0.180 0.820 46 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -4.045 5.605 2.737 7.434 hybrid contribution -0.462 -0.860 -0.948 1.361 sum -4.507 4.745 1.788 6.784 Atomic orbital electron populations 1.23644 0.73743 1.06131 1.02810 1.86536 1.25649 1.30870 1.83956 1.19858 0.87036 0.81764 0.71651 1.90822 1.66887 1.37017 1.47962 1.19613 0.91181 0.94049 1.21156 1.26240 0.79813 1.01104 0.90397 1.84686 1.29522 1.19891 1.66564 1.21499 0.95020 0.81263 1.15798 1.16989 0.81785 0.86054 0.76887 1.90450 1.85007 1.13634 1.52859 1.45820 1.04237 1.09894 1.64756 1.19686 0.98626 0.71943 0.97991 1.21284 1.51587 0.92820 0.91652 0.94304 1.25351 0.94159 0.96559 1.00130 1.69982 1.48959 1.04618 1.31090 0.85702 0.78322 0.78282 0.80558 1.20757 1.20345 1.19238 1.18280 0.87204 0.90548 1.00127 1.21070 0.91635 1.00656 1.05118 1.21061 0.98131 0.92928 0.99432 1.20125 0.95654 0.94474 1.01925 1.20825 0.93995 0.98404 1.02914 1.20066 0.92031 0.97324 0.98476 1.20853 1.03136 0.89641 1.02823 1.22481 1.02711 0.91740 1.03907 1.21733 0.89383 1.00240 0.97677 0.91610 0.91790 0.84402 0.72536 0.94224 0.92803 0.92048 0.86196 0.83556 0.90572 0.89986 0.90611 0.90457 0.91959 0.88911 0.81979 0.81182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.57 113.37 1.20 1.66 16 2 O -0.35 -8.24 10.41 -56.70 -0.59 -8.83 16 3 C 0.55 16.25 7.96 70.22 0.56 16.81 16 4 O -0.54 -18.31 16.73 19.80 0.33 -17.98 16 5 C -0.26 -8.07 6.16 -20.09 -0.12 -8.19 16 6 C 0.10 2.97 11.98 67.74 0.81 3.78 16 7 O -0.12 -4.55 6.46 -0.64 0.00 -4.55 16 8 C -0.08 -3.41 6.71 23.99 0.16 -3.24 16 9 C 0.59 26.30 7.53 86.47 0.65 26.95 16 10 O -0.54 -24.11 13.26 -4.33 -0.06 -24.17 16 11 N -0.53 -24.25 2.70 -639.69 -1.73 -25.98 16 12 C 0.24 11.45 4.51 85.64 0.39 11.84 16 13 C -0.54 -27.81 8.36 25.60 0.21 -27.60 16 14 H 0.04 2.15 7.81 -2.91 -0.02 2.13 16 15 C 0.04 2.01 5.46 84.65 0.46 2.47 16 16 N -0.91 -47.14 13.29 21.45 0.28 -46.85 16 17 Si 0.95 40.99 29.54 68.60 2.03 43.02 16 18 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 19 H -0.28 -11.84 7.11 99.48 0.71 -11.14 16 20 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 21 C 0.13 5.74 6.49 38.18 0.25 5.98 16 22 C -0.16 -6.51 9.29 22.39 0.21 -6.30 16 23 C -0.10 -3.09 9.69 22.25 0.22 -2.88 16 24 C -0.12 -3.49 5.88 -19.84 -0.12 -3.61 16 25 C -0.11 -2.02 9.60 71.24 0.68 -1.34 16 26 C -0.08 -2.51 5.88 -19.88 -0.12 -2.63 16 27 C -0.11 -2.56 9.60 71.24 0.68 -1.88 16 28 C -0.19 -7.53 8.68 22.39 0.19 -7.33 16 29 C -0.07 -2.48 10.41 22.64 0.24 -2.24 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.02 8.14 -2.38 -0.02 1.01 16 32 H 0.14 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.26 5.36 8.06 -2.91 -0.02 5.34 16 34 H 0.04 2.01 5.66 -2.38 -0.01 1.99 16 35 H 0.05 2.66 5.42 -2.39 -0.01 2.65 16 36 H 0.27 13.20 8.31 -92.71 -0.77 12.43 16 37 H 0.12 5.00 5.90 -2.91 -0.02 4.98 16 38 H 0.15 3.74 8.06 -2.91 -0.02 3.71 16 39 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 40 H 0.08 1.31 5.94 -2.39 -0.01 1.30 16 41 H 0.07 1.25 8.08 -2.39 -0.02 1.23 16 42 H 0.08 1.67 8.14 -2.39 -0.02 1.66 16 43 H 0.06 1.50 8.09 -2.39 -0.02 1.48 16 44 H 0.09 1.67 5.94 -2.39 -0.01 1.66 16 45 H 0.16 6.90 4.57 -59.67 -0.27 6.63 16 46 H 0.17 5.80 8.06 -2.91 -0.02 5.78 16 Total: -1.00 -66.53 389.03 7.60 -58.94 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 0.78 Total: 24.14 kcal Atomic # 6 Polarization: -4.29 SS G_CDS: 6.55 Total: 2.27 kcal Atomic # 7 Polarization: -71.39 SS G_CDS: -1.44 Total: -72.83 kcal Atomic # 8 Polarization: -55.20 SS G_CDS: -0.32 Total: -55.53 kcal Atomic # 14 Polarization: 40.99 SS G_CDS: 2.03 Total: 43.02 kcal Total: -66.53 7.60 -58.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097376433.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.465 kcal (2) G-P(sol) polarization free energy of solvation -66.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds