Wall clock time and date at job start Tue Mar 31 2020 05:21:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.49096 * 2 1 4 4 C 1.53051 * 109.50423 * 239.94170 * 2 1 3 5 5 N 1.46956 * 109.36167 * 181.62260 * 4 2 1 6 6 C 1.46900 * 111.00152 * 183.19007 * 5 4 2 7 7 C 1.53004 * 109.46933 * 75.82184 * 6 5 4 8 8 H 1.09001 * 109.47347 * 305.22427 * 7 6 5 9 9 C 1.47199 * 109.47120 * 65.22828 * 7 6 5 10 10 N 5.32380 * 137.95221 * 297.79146 * 2 1 3 11 11 C 1.53003 * 109.47109 * 185.22138 * 7 6 5 12 12 C 1.50696 * 109.47178 * 175.00018 * 11 7 6 13 13 H 1.07996 * 120.00167 * 0.02562 * 12 11 7 14 14 C 1.37883 * 119.99971 * 180.02562 * 12 11 7 15 15 N 1.31518 * 119.99851 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 119.99966 * 180.02562 * 14 12 11 17 17 H 1.48503 * 109.47215 * 89.99736 * 16 14 12 18 18 H 1.48499 * 109.47098 * 209.99551 * 16 14 12 19 19 H 1.48501 * 109.47288 * 329.99790 * 16 14 12 20 20 C 1.46950 * 110.88292 * 59.32099 * 5 4 2 21 21 C 1.53051 * 109.36432 * 300.67744 * 20 5 4 22 22 N 1.46954 * 109.36165 * 58.40406 * 21 20 5 23 23 C 1.46909 * 111.00000 * 176.81031 * 22 21 20 24 24 C 1.52995 * 109.46992 * 293.79890 * 23 22 21 25 25 H 1.08997 * 109.47379 * 59.99963 * 24 23 22 26 26 O 1.42898 * 109.47110 * 299.99673 * 24 23 22 27 27 C 1.50701 * 109.47181 * 180.02562 * 24 23 22 28 28 C 1.38243 * 119.99746 * 265.00141 * 27 24 23 29 29 C 1.38229 * 119.99625 * 179.72552 * 28 27 24 30 30 C 1.38237 * 120.00174 * 0.27288 * 29 28 27 31 31 C 1.38237 * 120.00168 * 359.97438 * 30 29 28 32 32 C 1.38233 * 120.00241 * 85.21389 * 27 24 23 33 33 H 1.08997 * 109.46624 * 299.95763 * 1 2 3 34 34 H 1.08994 * 109.47081 * 59.95694 * 1 2 3 35 35 H 1.08995 * 109.46869 * 179.97438 * 1 2 3 36 36 H 1.09002 * 109.49193 * 301.58640 * 4 2 1 37 37 H 1.08996 * 109.48827 * 61.63386 * 4 2 1 38 38 H 1.08999 * 109.47640 * 195.82334 * 6 5 4 39 39 H 1.09000 * 109.46801 * 315.82647 * 6 5 4 40 40 H 1.08998 * 109.47211 * 295.00349 * 11 7 6 41 41 H 1.09001 * 109.46825 * 54.99943 * 11 7 6 42 42 H 0.97000 * 119.99587 * 180.02562 * 15 14 12 43 43 H 1.08992 * 109.49109 * 60.64871 * 20 5 4 44 44 H 1.09004 * 109.49115 * 180.71358 * 20 5 4 45 45 H 1.08994 * 109.49302 * 298.43274 * 21 20 5 46 46 H 1.09003 * 109.48806 * 178.36825 * 21 20 5 47 47 H 1.08997 * 109.47089 * 173.79676 * 23 22 21 48 48 H 1.09002 * 109.46867 * 53.79540 * 23 22 21 49 49 H 0.96700 * 114.00466 * 299.99927 * 26 24 23 50 50 H 1.07991 * 119.99969 * 359.97438 * 28 27 24 51 51 H 1.07998 * 120.00191 * 180.25251 * 29 28 27 52 52 H 1.08003 * 120.00104 * 179.97438 * 30 29 28 53 53 H 1.08003 * 119.99870 * 179.97438 * 31 30 29 54 54 H 1.08003 * 119.99673 * 0.05816 * 32 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0411 -0.7226 -1.2487 5 7 3.5101 -0.7549 -1.2260 6 6 4.0420 -1.3747 -2.4470 7 6 3.9345 -0.3857 -3.6095 8 1 2.9028 -0.0470 -3.7042 9 6 4.8088 0.7703 -3.3526 10 7 5.4835 1.6625 -3.1543 11 6 4.3666 -1.0737 -4.9060 12 6 4.1449 -0.1402 -6.0680 13 1 3.7370 0.8454 -5.8988 14 6 4.4627 -0.5443 -7.3474 15 7 4.9599 -1.7443 -7.5535 16 14 4.1886 0.6131 -8.7877 17 1 5.4107 1.4274 -9.0080 18 1 3.8941 -0.1781 -10.0094 19 1 3.0429 1.5101 -8.4908 20 6 4.0004 -1.4484 -0.0268 21 6 3.4894 -0.7258 1.2219 22 7 2.0204 -0.6936 1.1993 23 6 1.4885 -0.0737 2.4203 24 6 1.8113 -0.9604 3.6246 25 1 2.8918 -1.0716 3.7147 26 8 1.2135 -2.2456 3.4437 27 6 1.2652 -0.3248 4.8772 28 6 2.0807 0.4697 5.6612 29 6 1.5781 1.0573 6.8070 30 6 0.2617 0.8458 7.1720 31 6 -0.5524 0.0471 6.3907 32 6 -0.0500 -0.5399 5.2445 33 1 -0.3632 0.5132 0.8904 34 1 -0.3633 0.5145 -0.8895 35 1 -0.3633 -1.0276 -0.0005 36 1 1.6552 -1.7419 -1.2625 37 1 1.7023 -0.1934 -2.1393 38 1 5.0874 -1.6422 -2.2930 39 1 3.4678 -2.2717 -2.6788 40 1 5.4235 -1.3331 -4.8449 41 1 3.7779 -1.9796 -5.0502 42 1 5.1839 -2.0285 -8.4535 43 1 3.6368 -2.4759 -0.0267 44 1 5.0904 -1.4480 -0.0266 45 1 3.8753 0.2935 1.2358 46 1 3.8279 -1.2552 2.1125 47 1 0.4079 0.0376 2.3303 48 1 1.9445 0.9067 2.5583 49 1 0.2508 -2.2229 3.3561 50 1 3.1092 0.6346 5.3763 51 1 2.2141 1.6813 7.4174 52 1 -0.1308 1.3045 8.0675 53 1 -1.5808 -0.1184 6.6761 54 1 -0.6859 -1.1642 4.6343 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106785550.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:32 Heat of formation + Delta-G solvation = -11.999059 kcal Electronic energy + Delta-G solvation = -31640.594232 eV Core-core repulsion = 27576.145567 eV Total energy + Delta-G solvation = -4064.448666 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 357.216 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.03258 -40.20661 -38.57608 -37.62018 -36.27403 -35.36292 -33.56120 -33.44872 -32.46974 -31.73584 -30.13432 -28.31953 -27.95797 -26.61877 -24.51804 -23.77149 -23.47797 -23.31241 -22.47784 -21.76535 -20.59077 -18.59799 -18.50733 -18.22301 -17.20680 -17.05853 -16.71585 -16.49255 -16.28650 -16.02873 -15.98868 -15.68861 -15.21571 -15.17486 -15.01096 -14.67372 -14.33310 -14.23765 -14.17965 -14.11451 -13.81092 -13.69997 -13.58941 -13.35508 -13.05351 -12.95813 -12.78179 -12.75161 -12.60201 -12.48306 -12.40592 -12.37752 -12.21266 -12.05124 -11.95808 -11.82106 -11.68746 -11.44682 -11.26709 -11.08819 -10.90712 -10.54997 -9.83052 -9.66581 -9.33535 -9.17810 -8.18802 -6.26932 0.39027 0.49176 1.40039 1.42312 1.51392 2.06197 2.13957 2.41689 2.70245 2.89401 2.94060 3.16534 3.35482 3.58539 3.71886 3.85861 3.91142 3.97741 4.01801 4.11068 4.19616 4.22154 4.29379 4.32461 4.38347 4.40948 4.49189 4.51630 4.57065 4.62873 4.69057 4.71464 4.75164 4.80504 4.84694 4.89756 4.96828 4.97765 5.02672 5.05757 5.11378 5.14642 5.17207 5.38822 5.47310 5.55395 5.62060 5.62191 5.64661 5.79592 5.95970 6.02301 6.09692 6.16236 6.22833 6.24400 6.83481 6.87250 6.93358 7.41393 8.91989 Molecular weight = 357.22amu Principal moments of inertia in cm(-1) A = 0.023845 B = 0.001745 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.974095 B =16044.714018 C =16132.311612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.086 3.914 3 H 0.029 0.971 4 C 0.061 3.939 5 N -0.556 5.556 6 C 0.074 3.926 7 C 0.025 3.975 8 H 0.113 0.887 9 C 0.268 3.732 10 N -0.516 5.516 11 C 0.038 3.962 12 C -0.538 4.538 13 H 0.053 0.947 14 C 0.012 3.988 15 N -0.922 5.922 16 Si 0.948 3.052 17 H -0.285 1.285 18 H -0.278 1.278 19 H -0.264 1.264 20 C 0.061 3.939 21 C 0.061 3.939 22 N -0.522 5.522 23 C 0.030 3.970 24 C 0.162 3.838 25 H 0.097 0.903 26 O -0.554 6.554 27 C -0.126 4.126 28 C -0.126 4.126 29 C -0.129 4.129 30 C -0.130 4.130 31 C -0.125 4.125 32 C -0.118 4.118 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.049 0.951 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.001 0.999 41 H 0.035 0.965 42 H 0.264 0.736 43 H 0.047 0.953 44 H 0.077 0.923 45 H 0.026 0.974 46 H 0.090 0.910 47 H 0.096 0.904 48 H 0.035 0.965 49 H 0.382 0.618 50 H 0.126 0.874 51 H 0.136 0.864 52 H 0.139 0.861 53 H 0.142 0.858 54 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.295 0.011 29.962 33.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 H 0.047 0.953 4 C -0.067 4.067 5 N -0.281 5.281 6 C -0.055 4.055 7 C 0.003 3.997 8 H 0.131 0.869 9 C -0.048 4.048 10 N -0.194 5.194 11 C 0.000 4.000 12 C -0.576 4.576 13 H 0.071 0.929 14 C -0.187 4.187 15 N -0.562 5.562 16 Si 0.774 3.226 17 H -0.211 1.211 18 H -0.203 1.203 19 H -0.188 1.188 20 C -0.067 4.067 21 C -0.067 4.067 22 N -0.247 5.247 23 C -0.098 4.098 24 C 0.103 3.897 25 H 0.114 0.886 26 O -0.361 6.361 27 C -0.127 4.127 28 C -0.145 4.145 29 C -0.147 4.147 30 C -0.148 4.148 31 C -0.143 4.143 32 C -0.136 4.136 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.019 0.981 41 H 0.054 0.946 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.096 0.904 45 H 0.045 0.955 46 H 0.108 0.892 47 H 0.114 0.886 48 H 0.053 0.947 49 H 0.232 0.768 50 H 0.144 0.856 51 H 0.154 0.846 52 H 0.157 0.843 53 H 0.159 0.841 54 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -12.607 1.044 30.158 32.704 hybrid contribution -0.309 0.584 -1.253 1.417 sum -12.916 1.628 28.905 31.701 Atomic orbital electron populations 1.21847 0.92340 1.03120 1.02527 1.21642 0.96361 0.94852 0.89434 0.95306 1.22282 0.86516 1.00116 0.97815 1.62101 1.09340 1.54460 1.02164 1.22026 1.01124 0.94691 0.87635 1.19148 0.96556 0.87612 0.96402 0.86886 1.29351 0.92554 0.93523 0.89369 1.80967 1.12311 1.13216 1.12890 1.18990 0.96210 0.95652 0.89194 1.21533 1.42436 1.00851 0.92791 0.92873 1.25708 0.94973 0.96496 1.01566 1.70034 1.44326 1.19524 1.22326 0.85703 0.78504 0.79137 0.79292 1.21097 1.20310 1.18843 1.22123 0.99706 0.96094 0.88744 1.22144 0.87700 0.98848 0.98022 1.62161 1.07884 1.53233 1.01454 1.22865 1.01858 0.95484 0.89588 1.20630 0.97538 0.82672 0.88894 0.88558 1.86625 1.26237 1.27923 1.95280 1.20628 0.95240 0.99145 0.97643 1.21214 1.00178 0.97676 0.95394 1.21420 0.96399 0.99914 0.96954 1.21514 0.94091 0.98678 1.00474 1.21453 1.00887 0.97121 0.94857 1.21151 0.94747 0.99942 0.97776 0.91493 0.91444 0.91196 0.93250 0.90146 0.90620 0.91125 0.98064 0.94650 0.92734 0.93493 0.90436 0.95531 0.89173 0.88594 0.94680 0.76830 0.85583 0.84603 0.84294 0.84051 0.84394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 8.90 71.98 0.64 -1.51 16 2 C 0.09 1.74 2.56 44.92 0.12 1.86 16 3 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 4 C 0.06 1.40 4.72 86.31 0.41 1.81 16 5 N -0.56 -14.70 4.35 -895.73 -3.89 -18.59 16 6 C 0.07 2.17 4.36 86.30 0.38 2.55 16 7 C 0.02 0.91 2.27 -12.60 -0.03 0.88 16 8 H 0.11 3.84 6.73 -2.39 -0.02 3.83 16 9 C 0.27 11.28 13.67 89.44 1.22 12.51 16 10 N -0.52 -23.70 18.54 20.01 0.37 -23.33 16 11 C 0.04 1.78 4.42 29.85 0.13 1.91 16 12 C -0.54 -28.65 8.60 25.60 0.22 -28.43 16 13 H 0.05 2.81 7.59 -2.91 -0.02 2.79 16 14 C 0.01 0.64 5.46 84.66 0.46 1.10 16 15 N -0.92 -53.06 13.29 21.45 0.28 -52.77 16 16 Si 0.95 43.59 29.54 68.60 2.03 45.61 16 17 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 20 C 0.06 1.41 5.56 86.31 0.48 1.89 16 21 C 0.06 1.26 5.41 86.31 0.47 1.73 16 22 N -0.52 -9.88 4.39 -870.46 -3.82 -13.70 16 23 C 0.03 0.46 4.37 86.30 0.38 0.84 16 24 C 0.16 2.42 3.09 29.85 0.09 2.51 16 25 H 0.10 1.57 6.40 -2.39 -0.02 1.56 16 26 O -0.55 -9.03 13.00 -148.98 -1.94 -10.96 16 27 C -0.13 -1.78 5.01 -19.86 -0.10 -1.88 16 28 C -0.13 -1.80 9.68 22.27 0.22 -1.58 16 29 C -0.13 -1.61 10.05 22.27 0.22 -1.38 16 30 C -0.13 -1.45 10.05 22.27 0.22 -1.23 16 31 C -0.13 -1.36 10.05 22.27 0.22 -1.14 16 32 C -0.12 -1.40 9.33 22.27 0.21 -1.19 16 33 H 0.07 0.86 6.15 -2.39 -0.01 0.85 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.08 1.91 6.72 -2.39 -0.02 1.89 16 38 H 0.08 2.25 7.84 -2.39 -0.02 2.23 16 39 H 0.07 1.90 7.99 -2.39 -0.02 1.88 16 40 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 41 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 43 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.08 1.77 8.00 -2.38 -0.02 1.75 16 45 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.09 1.64 6.34 -2.39 -0.02 1.63 16 47 H 0.10 1.26 5.73 -2.39 -0.01 1.25 16 48 H 0.03 0.60 8.12 -2.39 -0.02 0.58 16 49 H 0.38 3.82 7.38 -74.06 -0.55 3.27 16 50 H 0.13 1.56 8.06 -2.92 -0.02 1.53 16 51 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 52 H 0.14 0.96 8.06 -2.91 -0.02 0.94 16 53 H 0.14 0.91 8.06 -2.91 -0.02 0.89 16 54 H 0.14 1.03 6.60 -2.91 -0.02 1.01 16 Total: -1.00 -67.17 429.24 -0.67 -67.83 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: 0.35 Total: 14.68 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: 5.96 Total: -8.76 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -7.06 Total: -108.40 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -1.94 Total: -10.96 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Total: -67.17 -0.67 -67.83 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106785550.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.834 kcal (2) G-P(sol) polarization free energy of solvation -67.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds