Wall clock time and date at job start Tue Mar 31 2020 05:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47167 * 2 1 4 4 N 1.46499 * 109.47521 * 180.02562 * 3 2 1 5 5 C 1.36927 * 125.07389 * 264.98126 * 4 3 2 6 6 C 1.34227 * 109.92511 * 180.02562 * 5 4 3 7 7 C 1.46514 * 107.01575 * 359.97438 * 6 5 4 8 8 C 1.39710 * 133.90672 * 180.02562 * 7 6 5 9 9 C 1.36482 * 119.86619 * 179.97438 * 8 7 6 10 10 C 1.39483 * 120.45451 * 359.97438 * 9 8 7 11 11 N 1.39756 * 119.75344 * 180.02562 * 10 9 8 12 12 C 1.34776 * 119.99829 * 35.16950 * 11 10 9 13 13 O 1.21391 * 119.99936 * 355.33830 * 12 11 10 14 14 C 1.49320 * 119.99944 * 175.33941 * 12 11 10 15 15 O 1.21365 * 120.00008 * 5.93084 * 14 12 11 16 16 N 1.34779 * 120.00143 * 185.93440 * 14 12 11 17 17 C 1.46502 * 119.99814 * 356.43137 * 16 14 12 18 18 C 1.46498 * 120.00141 * 176.44144 * 16 14 12 19 19 H 1.08997 * 109.47115 * 359.97438 * 18 16 14 20 20 C 1.53003 * 109.47187 * 119.99611 * 18 16 14 21 21 C 1.50697 * 109.46807 * 239.99243 * 18 16 14 22 22 H 1.08004 * 120.00241 * 0.02562 * 21 18 16 23 23 C 1.37874 * 120.00137 * 179.97438 * 21 18 16 24 24 N 1.31526 * 119.99898 * 0.02562 * 23 21 18 25 25 Si 1.86794 * 120.00350 * 180.02562 * 23 21 18 26 26 H 1.48505 * 109.47555 * 179.97438 * 25 23 21 27 27 H 1.48503 * 109.46897 * 299.99838 * 25 23 21 28 28 H 1.48499 * 109.47289 * 59.99979 * 25 23 21 29 29 C 1.38445 * 120.49800 * 0.27644 * 10 9 8 30 30 C 1.37718 * 125.07440 * 84.99425 * 4 3 2 31 31 H 1.08997 * 109.46742 * 60.00342 * 1 2 3 32 32 H 1.08997 * 109.47000 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46808 * 300.00021 * 1 2 3 34 34 H 1.08996 * 109.47105 * 239.99911 * 2 1 3 35 35 H 1.09006 * 109.47109 * 120.00111 * 2 1 3 36 36 H 1.08997 * 109.47644 * 59.99701 * 3 2 1 37 37 H 1.09006 * 109.47197 * 300.00057 * 3 2 1 38 38 H 1.07996 * 125.03465 * 0.02880 * 5 4 3 39 39 H 1.08007 * 126.48998 * 179.97438 * 6 5 4 40 40 H 1.08003 * 120.06611 * 359.97347 * 8 7 6 41 41 H 1.07999 * 119.77228 * 180.02562 * 9 8 7 42 42 H 0.96998 * 120.00004 * 215.17727 * 11 10 9 43 43 H 1.08996 * 109.47476 * 275.98758 * 17 16 14 44 44 H 1.09004 * 109.46750 * 35.98438 * 17 16 14 45 45 H 1.08999 * 109.47026 * 155.97993 * 17 16 14 46 46 H 1.08995 * 109.46975 * 179.97438 * 20 18 16 47 47 H 1.09003 * 109.46806 * 299.99749 * 20 18 16 48 48 H 1.08997 * 109.47110 * 59.99976 * 20 18 16 49 49 H 0.97001 * 119.99912 * 180.02562 * 24 23 21 50 50 H 1.07997 * 120.13869 * 179.72415 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2923 1.5404 1.1154 6 6 5.5878 1.5104 0.7654 7 6 5.6349 1.3823 -0.6934 8 6 6.6721 1.3006 -1.6258 9 6 6.3838 1.1833 -2.9547 10 6 5.0591 1.1438 -3.3898 11 7 4.7806 1.0229 -4.7540 12 6 5.5818 0.2788 -5.5420 13 8 6.5915 -0.2168 -5.0854 14 6 5.2274 0.0641 -6.9765 15 8 4.2785 0.6455 -7.4608 16 7 5.9613 -0.7754 -7.7336 17 6 7.1524 -1.4170 -7.1716 18 6 5.5680 -1.0462 -9.1186 19 1 4.6648 -0.4843 -9.3563 20 6 6.6960 -0.6222 -10.0614 21 6 5.3009 -2.5199 -9.2859 22 1 5.4125 -3.1879 -8.4446 23 6 4.9130 -3.0153 -10.5127 24 7 4.7766 -2.2018 -11.5371 25 14 4.5813 -4.8418 -10.7199 26 1 4.1815 -5.1163 -12.1236 27 1 5.8114 -5.6082 -10.3963 28 1 3.4866 -5.2531 -9.8046 29 6 4.0182 1.2287 -2.4811 30 6 4.2959 1.3444 -1.1238 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8934 -0.5139 0.8900 36 1 1.6767 1.9564 0.8899 37 1 1.6767 1.9563 -0.8900 38 1 3.9253 1.6287 2.1272 39 1 6.4350 1.5696 1.4327 40 1 7.7000 1.3301 -1.2957 41 1 7.1867 1.1198 -3.6741 42 1 4.0108 1.4746 -5.1337 43 1 8.0031 -0.7407 -7.2552 44 1 6.9771 -1.6523 -6.1218 45 1 7.3631 -2.3355 -7.7195 46 1 6.4035 -0.8241 -11.0917 47 1 6.8892 0.4438 -9.9403 48 1 7.5989 -1.1844 -9.8235 49 1 4.5033 -2.5503 -12.4002 50 1 2.9947 1.2020 -2.8248 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132301134.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:56 Heat of formation + Delta-G solvation = 7.136454 kcal Electronic energy + Delta-G solvation = -31331.177175 eV Core-core repulsion = 27131.725193 eV Total energy + Delta-G solvation = -4199.451982 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.54695 -40.54540 -38.52566 -37.12282 -35.82726 -35.28044 -33.93659 -32.76404 -31.71015 -30.02479 -29.54384 -28.36896 -26.26852 -26.19698 -25.29425 -24.55486 -22.95917 -22.11733 -21.81339 -20.84069 -19.98550 -19.27412 -17.57656 -17.43328 -16.97099 -16.38199 -16.09176 -15.94158 -15.53151 -15.22235 -15.13795 -15.08199 -14.50997 -14.26333 -14.06063 -13.70894 -13.51247 -13.47990 -13.28636 -13.17157 -12.61733 -12.52670 -12.41549 -12.35563 -12.12572 -12.01835 -11.64027 -11.56880 -11.49263 -11.27985 -11.11500 -11.04292 -10.88518 -10.77870 -10.62336 -10.30729 -10.21150 -10.11305 -9.48157 -9.24609 -8.78301 -8.47150 -8.01524 -7.74954 -7.60208 -6.12801 -4.21360 0.92855 1.51895 1.93900 2.45245 2.60066 2.82127 3.26664 3.31332 3.33893 3.65459 3.88984 4.04603 4.25996 4.36210 4.41892 4.54614 4.65141 4.76886 4.79663 4.85410 4.94147 5.10675 5.18760 5.23605 5.25567 5.34000 5.43597 5.47404 5.55958 5.62423 5.74190 5.80456 5.87476 6.07143 6.20468 6.26342 6.27217 6.49599 6.61362 6.66107 6.69696 6.74750 6.78667 6.96818 7.11030 7.14335 7.16095 7.30678 7.40382 7.64478 7.87341 8.01448 8.08535 8.34522 8.59643 8.84259 9.44806 10.92578 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.013395 B = 0.002207 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.874712 B =12686.611461 C =13834.808764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.143 4.143 3 C 0.111 3.889 4 N -0.485 5.485 5 C 0.043 3.957 6 C -0.199 4.199 7 C -0.124 4.124 8 C -0.055 4.055 9 C -0.142 4.142 10 C 0.174 3.826 11 N -0.651 5.651 12 C 0.510 3.490 13 O -0.497 6.497 14 C 0.494 3.506 15 O -0.538 6.538 16 N -0.550 5.550 17 C 0.068 3.932 18 C 0.255 3.745 19 H 0.066 0.934 20 C -0.146 4.146 21 C -0.530 4.530 22 H 0.062 0.938 23 C 0.066 3.934 24 N -0.887 5.887 25 Si 0.902 3.098 26 H -0.286 1.286 27 H -0.276 1.276 28 H -0.276 1.276 29 C -0.160 4.160 30 C 0.117 3.883 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.164 0.836 39 H 0.145 0.855 40 H 0.126 0.874 41 H 0.142 0.858 42 H 0.421 0.579 43 H 0.047 0.953 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.096 0.904 47 H 0.013 0.987 48 H 0.033 0.967 49 H 0.265 0.735 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.691 8.405 24.950 26.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.182 4.182 3 C -0.011 4.011 4 N -0.169 5.169 5 C -0.081 4.081 6 C -0.224 4.224 7 C -0.128 4.128 8 C -0.074 4.074 9 C -0.163 4.163 10 C 0.079 3.921 11 N -0.298 5.298 12 C 0.294 3.706 13 O -0.371 6.371 14 C 0.274 3.726 15 O -0.417 6.417 16 N -0.280 5.280 17 C -0.075 4.075 18 C 0.155 3.845 19 H 0.084 0.916 20 C -0.205 4.205 21 C -0.568 4.568 22 H 0.080 0.920 23 C -0.136 4.136 24 N -0.524 5.524 25 Si 0.729 3.271 26 H -0.211 1.211 27 H -0.201 1.201 28 H -0.202 1.202 29 C -0.183 4.183 30 C 0.011 3.989 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.182 0.818 39 H 0.162 0.838 40 H 0.144 0.856 41 H 0.159 0.841 42 H 0.259 0.741 43 H 0.066 0.934 44 H 0.108 0.892 45 H 0.095 0.905 46 H 0.115 0.885 47 H 0.032 0.968 48 H 0.052 0.948 49 H 0.075 0.925 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.841 8.299 24.723 26.233 hybrid contribution -0.622 -0.867 -0.287 1.105 sum -3.463 7.432 24.436 25.775 Atomic orbital electron populations 1.21704 0.94477 1.02547 1.02092 1.21951 0.96616 0.96146 1.03461 1.21834 0.77160 0.98092 1.04033 1.43962 1.05407 1.62955 1.04574 1.21736 0.90477 1.04854 0.91022 1.21652 0.95856 1.11916 0.93015 1.19227 0.92069 1.07885 0.93666 1.20151 0.98009 0.97817 0.91415 1.20829 0.95473 1.03609 0.96359 1.17306 0.93184 0.99393 0.82244 1.43227 1.31169 1.49071 1.06309 1.20918 0.83349 0.78101 0.88262 1.90646 1.24575 1.46403 1.75495 1.19591 0.84619 0.82576 0.85800 1.90718 1.28932 1.48873 1.73217 1.48270 1.25065 1.40101 1.14596 1.22192 0.86481 0.98254 1.00550 1.19169 0.95281 0.96740 0.73286 0.91594 1.22086 0.98113 0.96155 1.04121 1.21250 1.47360 0.92080 0.96131 0.92028 1.24884 0.94878 0.98300 0.95581 1.69871 1.46546 1.34718 1.01305 0.86503 0.78817 0.84622 0.77166 1.21110 1.20101 1.20193 1.19549 0.98418 1.11185 0.89197 1.17777 0.90056 1.03392 0.87680 0.92242 0.91974 0.92494 0.91050 0.91325 0.89347 0.89672 0.81837 0.83768 0.85645 0.84054 0.74125 0.93417 0.89219 0.90466 0.88527 0.96783 0.94810 0.92498 0.85969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.16 0.37 -0.43 16 2 C -0.14 -0.96 6.26 -26.73 -0.17 -1.12 16 3 C 0.11 0.72 6.00 -4.05 -0.02 0.70 16 4 N -0.49 -4.54 2.78 -114.42 -0.32 -4.86 16 5 C 0.04 0.36 11.28 -16.69 -0.19 0.17 16 6 C -0.20 -1.93 11.08 -37.66 -0.42 -2.35 16 7 C -0.12 -1.51 6.37 -105.09 -0.67 -2.18 16 8 C -0.05 -0.67 10.04 -39.67 -0.40 -1.07 16 9 C -0.14 -1.97 8.61 -39.75 -0.34 -2.32 16 10 C 0.17 2.42 6.29 -83.71 -0.53 1.90 16 11 N -0.65 -9.58 5.31 -10.28 -0.05 -9.63 16 12 C 0.51 8.97 7.61 -11.65 -0.09 8.88 16 13 O -0.50 -8.93 10.54 5.46 0.06 -8.88 16 14 C 0.49 10.34 7.73 -11.65 -0.09 10.25 16 15 O -0.54 -12.38 15.82 5.48 0.09 -12.29 16 16 N -0.55 -12.14 2.75 -175.82 -0.48 -12.63 16 17 C 0.07 1.30 8.48 59.85 0.51 1.80 16 18 C 0.25 6.47 2.63 -69.08 -0.18 6.29 16 19 H 0.07 1.89 6.90 -51.93 -0.36 1.54 16 20 C -0.15 -3.49 8.97 37.16 0.33 -3.16 16 21 C -0.53 -14.21 7.95 -34.44 -0.27 -14.49 16 22 H 0.06 1.64 7.44 -52.48 -0.39 1.25 16 23 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 24 N -0.89 -24.66 11.32 55.43 0.63 -24.03 16 25 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 26 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 28 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 29 C -0.16 -1.97 9.90 -39.21 -0.39 -2.36 16 30 C 0.12 1.40 6.81 -84.00 -0.57 0.83 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.09 0.39 8.12 -51.93 -0.42 -0.03 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.14 1.09 8.06 -52.48 -0.42 0.66 16 40 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 41 H 0.14 2.08 6.19 -52.49 -0.32 1.76 16 42 H 0.42 5.59 8.30 -40.82 -0.34 5.25 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.09 1.65 5.36 -51.93 -0.28 1.37 16 45 H 0.08 1.50 7.12 -51.93 -0.37 1.13 16 46 H 0.10 2.50 6.07 -51.93 -0.32 2.19 16 47 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 48 H 0.03 0.75 7.67 -51.93 -0.40 0.35 16 49 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 50 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 409.45 15.07 6.17 6.17 Total: -1.00 -31.23 409.45 -9.55 -40.78 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -7.40 Total: 6.46 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -3.21 Total: 3.05 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: -0.23 Total: -51.15 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: 0.14 Total: -21.17 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -31.23 -9.55 -40.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132301134.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.918 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds