Wall clock time and date at job start Tue Mar 31 2020 05:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47167 * 2 1 4 4 N 1.46499 * 109.47521 * 180.02562 * 3 2 1 5 5 C 1.36927 * 125.07389 * 264.98126 * 4 3 2 6 6 C 1.34227 * 109.92511 * 180.02562 * 5 4 3 7 7 C 1.46514 * 107.01575 * 359.97438 * 6 5 4 8 8 C 1.39710 * 133.90672 * 180.02562 * 7 6 5 9 9 C 1.36482 * 119.86619 * 179.97438 * 8 7 6 10 10 C 1.39483 * 120.45451 * 359.97438 * 9 8 7 11 11 N 1.39756 * 119.75344 * 180.02562 * 10 9 8 12 12 C 1.34776 * 119.99829 * 35.16950 * 11 10 9 13 13 O 1.21391 * 119.99936 * 355.33830 * 12 11 10 14 14 C 1.49320 * 119.99944 * 175.33941 * 12 11 10 15 15 O 1.21365 * 120.00008 * 5.93084 * 14 12 11 16 16 N 1.34779 * 120.00143 * 185.93440 * 14 12 11 17 17 C 1.46502 * 119.99814 * 356.43137 * 16 14 12 18 18 C 1.46498 * 120.00141 * 176.44144 * 16 14 12 19 19 H 1.08997 * 109.47115 * 359.97438 * 18 16 14 20 20 C 1.53003 * 109.47187 * 119.99611 * 18 16 14 21 21 C 1.50697 * 109.46807 * 239.99243 * 18 16 14 22 22 H 1.08004 * 120.00241 * 0.02562 * 21 18 16 23 23 C 1.37874 * 120.00137 * 179.97438 * 21 18 16 24 24 N 1.31526 * 119.99898 * 0.02562 * 23 21 18 25 25 Si 1.86794 * 120.00350 * 180.02562 * 23 21 18 26 26 H 1.48505 * 109.47555 * 179.97438 * 25 23 21 27 27 H 1.48503 * 109.46897 * 299.99838 * 25 23 21 28 28 H 1.48499 * 109.47289 * 59.99979 * 25 23 21 29 29 C 1.38445 * 120.49800 * 0.27644 * 10 9 8 30 30 C 1.37718 * 125.07440 * 84.99425 * 4 3 2 31 31 H 1.08997 * 109.46742 * 60.00342 * 1 2 3 32 32 H 1.08997 * 109.47000 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46808 * 300.00021 * 1 2 3 34 34 H 1.08996 * 109.47105 * 239.99911 * 2 1 3 35 35 H 1.09006 * 109.47109 * 120.00111 * 2 1 3 36 36 H 1.08997 * 109.47644 * 59.99701 * 3 2 1 37 37 H 1.09006 * 109.47197 * 300.00057 * 3 2 1 38 38 H 1.07996 * 125.03465 * 0.02880 * 5 4 3 39 39 H 1.08007 * 126.48998 * 179.97438 * 6 5 4 40 40 H 1.08003 * 120.06611 * 359.97347 * 8 7 6 41 41 H 1.07999 * 119.77228 * 180.02562 * 9 8 7 42 42 H 0.96998 * 120.00004 * 215.17727 * 11 10 9 43 43 H 1.08996 * 109.47476 * 275.98758 * 17 16 14 44 44 H 1.09004 * 109.46750 * 35.98438 * 17 16 14 45 45 H 1.08999 * 109.47026 * 155.97993 * 17 16 14 46 46 H 1.08995 * 109.46975 * 179.97438 * 20 18 16 47 47 H 1.09003 * 109.46806 * 299.99749 * 20 18 16 48 48 H 1.08997 * 109.47110 * 59.99976 * 20 18 16 49 49 H 0.97001 * 119.99912 * 180.02562 * 24 23 21 50 50 H 1.07997 * 120.13869 * 179.72415 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2923 1.5404 1.1154 6 6 5.5878 1.5104 0.7654 7 6 5.6349 1.3823 -0.6934 8 6 6.6721 1.3006 -1.6258 9 6 6.3838 1.1833 -2.9547 10 6 5.0591 1.1438 -3.3898 11 7 4.7806 1.0229 -4.7540 12 6 5.5818 0.2788 -5.5420 13 8 6.5915 -0.2168 -5.0854 14 6 5.2274 0.0641 -6.9765 15 8 4.2785 0.6455 -7.4608 16 7 5.9613 -0.7754 -7.7336 17 6 7.1524 -1.4170 -7.1716 18 6 5.5680 -1.0462 -9.1186 19 1 4.6648 -0.4843 -9.3563 20 6 6.6960 -0.6222 -10.0614 21 6 5.3009 -2.5199 -9.2859 22 1 5.4125 -3.1879 -8.4446 23 6 4.9130 -3.0153 -10.5127 24 7 4.7766 -2.2018 -11.5371 25 14 4.5813 -4.8418 -10.7199 26 1 4.1815 -5.1163 -12.1236 27 1 5.8114 -5.6082 -10.3963 28 1 3.4866 -5.2531 -9.8046 29 6 4.0182 1.2287 -2.4811 30 6 4.2959 1.3444 -1.1238 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.8934 -0.5139 0.8900 36 1 1.6767 1.9564 0.8899 37 1 1.6767 1.9563 -0.8900 38 1 3.9253 1.6287 2.1272 39 1 6.4350 1.5696 1.4327 40 1 7.7000 1.3301 -1.2957 41 1 7.1867 1.1198 -3.6741 42 1 4.0108 1.4746 -5.1337 43 1 8.0031 -0.7407 -7.2552 44 1 6.9771 -1.6523 -6.1218 45 1 7.3631 -2.3355 -7.7195 46 1 6.4035 -0.8241 -11.0917 47 1 6.8892 0.4438 -9.9403 48 1 7.5989 -1.1844 -9.8235 49 1 4.5033 -2.5503 -12.4002 50 1 2.9947 1.2020 -2.8248 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132301134.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:55 Heat of formation + Delta-G solvation = -9.407431 kcal Electronic energy + Delta-G solvation = -31331.894571 eV Core-core repulsion = 27131.725193 eV Total energy + Delta-G solvation = -4200.169379 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.46236 -41.86775 -40.01595 -38.27312 -37.45704 -36.16420 -35.04527 -34.61590 -32.51379 -31.48548 -30.81225 -29.37523 -27.82088 -27.34270 -26.83642 -26.03243 -23.81067 -23.30634 -22.60479 -21.96647 -21.13071 -20.63774 -18.98757 -18.58363 -18.32379 -17.89983 -17.58119 -17.26400 -16.83653 -16.49815 -16.18371 -16.04405 -15.85178 -15.42353 -15.07959 -14.84380 -14.80209 -14.48475 -14.40325 -14.15812 -13.99965 -13.98880 -13.57193 -13.43297 -13.19210 -13.01709 -12.94140 -12.77286 -12.74657 -12.70980 -12.68765 -12.27723 -12.23555 -12.16647 -12.10135 -11.94204 -11.72702 -11.26455 -11.13953 -10.57969 -10.39882 -10.29734 -9.53684 -8.93184 -8.46559 -8.18003 -6.34651 -0.10793 0.40677 0.70202 1.25571 1.42977 1.44193 1.52261 1.81072 1.93027 2.13814 2.38476 2.61236 2.91071 3.10360 3.27459 3.72528 3.75766 3.93384 4.00398 4.10130 4.28703 4.29405 4.33912 4.40973 4.50410 4.57060 4.61779 4.66078 4.70944 4.71653 4.80326 4.86643 4.95934 4.98694 5.03825 5.04982 5.11033 5.14267 5.24089 5.29948 5.34056 5.39031 5.39442 5.57494 5.60321 5.77855 5.86068 5.90426 6.05223 6.08489 6.24083 6.45652 6.48477 6.64521 6.75111 6.97027 7.35942 8.86572 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.013395 B = 0.002207 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.874712 B =12686.611461 C =13834.808764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.106 3.894 4 N -0.484 5.484 5 C 0.059 3.941 6 C -0.219 4.219 7 C -0.137 4.137 8 C -0.059 4.059 9 C -0.157 4.157 10 C 0.147 3.853 11 N -0.635 5.635 12 C 0.519 3.481 13 O -0.503 6.503 14 C 0.488 3.512 15 O -0.565 6.565 16 N -0.560 5.560 17 C 0.074 3.926 18 C 0.259 3.741 19 H 0.024 0.976 20 C -0.133 4.133 21 C -0.545 4.545 22 H 0.060 0.940 23 C 0.021 3.979 24 N -0.913 5.913 25 Si 0.965 3.035 26 H -0.281 1.281 27 H -0.265 1.265 28 H -0.276 1.276 29 C -0.152 4.152 30 C 0.098 3.902 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.045 0.955 35 H 0.069 0.931 36 H 0.119 0.881 37 H 0.086 0.914 38 H 0.206 0.794 39 H 0.164 0.836 40 H 0.143 0.857 41 H 0.128 0.872 42 H 0.426 0.574 43 H 0.064 0.936 44 H 0.098 0.902 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.023 0.977 48 H 0.045 0.955 49 H 0.267 0.733 50 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.128 8.219 28.178 29.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.177 4.177 3 C -0.014 4.014 4 N -0.167 5.167 5 C -0.065 4.065 6 C -0.243 4.243 7 C -0.143 4.143 8 C -0.078 4.078 9 C -0.178 4.178 10 C 0.052 3.948 11 N -0.282 5.282 12 C 0.301 3.699 13 O -0.378 6.378 14 C 0.270 3.730 15 O -0.446 6.446 16 N -0.290 5.290 17 C -0.068 4.068 18 C 0.158 3.842 19 H 0.042 0.958 20 C -0.192 4.192 21 C -0.583 4.583 22 H 0.078 0.922 23 C -0.180 4.180 24 N -0.551 5.551 25 Si 0.790 3.210 26 H -0.206 1.206 27 H -0.190 1.190 28 H -0.202 1.202 29 C -0.175 4.175 30 C -0.009 4.009 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.137 0.863 37 H 0.104 0.896 38 H 0.222 0.778 39 H 0.182 0.818 40 H 0.161 0.839 41 H 0.146 0.854 42 H 0.265 0.735 43 H 0.082 0.918 44 H 0.116 0.884 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.042 0.958 48 H 0.064 0.936 49 H 0.076 0.924 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.284 8.130 27.999 29.340 hybrid contribution -0.570 -0.723 -1.107 1.440 sum -3.853 7.407 26.892 28.158 Atomic orbital electron populations 1.21684 0.93366 1.02574 1.02898 1.21883 0.97512 0.96036 1.02231 1.22077 0.75513 0.98202 1.05650 1.44254 1.06516 1.61902 1.04038 1.22435 0.89956 1.01917 0.92201 1.21974 0.97437 1.13028 0.91881 1.19641 0.92118 1.07284 0.95219 1.20343 0.99200 0.97337 0.90894 1.20782 0.95125 1.04970 0.96934 1.17401 0.93865 1.01963 0.81554 1.43018 1.30538 1.47935 1.06696 1.20113 0.83884 0.79019 0.86843 1.90637 1.24851 1.47172 1.75103 1.20164 0.83889 0.81699 0.87234 1.90689 1.29998 1.49741 1.74221 1.48242 1.26169 1.40813 1.13794 1.22267 0.85779 0.98149 1.00592 1.18827 0.94212 0.95647 0.75534 0.95845 1.21893 0.97943 0.96922 1.02427 1.21475 1.47756 0.92748 0.96327 0.92178 1.25684 0.94517 1.02544 0.95239 1.69997 1.46936 1.36503 1.01676 0.85502 0.78861 0.79510 0.77122 1.20605 1.18968 1.20176 1.19643 0.98556 1.09864 0.89461 1.17931 0.90865 1.03932 0.88200 0.92343 0.92386 0.90772 0.93617 0.91209 0.86271 0.89583 0.77763 0.81825 0.83915 0.85395 0.73514 0.91786 0.88423 0.90999 0.90664 0.95775 0.93557 0.92374 0.84756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 71.98 0.71 -0.54 16 2 C -0.14 -1.57 6.26 30.59 0.19 -1.38 16 3 C 0.11 1.08 6.00 86.38 0.52 1.60 16 4 N -0.48 -7.75 2.78 -515.91 -1.44 -9.18 16 5 C 0.06 0.76 11.28 82.98 0.94 1.70 16 6 C -0.22 -3.65 11.08 23.51 0.26 -3.39 16 7 C -0.14 -3.16 6.37 -20.16 -0.13 -3.29 16 8 C -0.06 -1.42 10.04 22.22 0.22 -1.20 16 9 C -0.16 -4.42 8.61 22.16 0.19 -4.23 16 10 C 0.15 4.11 6.29 38.23 0.24 4.35 16 11 N -0.64 -19.07 5.31 -304.77 -1.62 -20.69 16 12 C 0.52 18.59 7.61 87.23 0.66 19.25 16 13 O -0.50 -18.21 10.54 -3.37 -0.04 -18.24 16 14 C 0.49 21.07 7.73 87.23 0.67 21.75 16 15 O -0.57 -27.09 15.82 -3.29 -0.05 -27.15 16 16 N -0.56 -25.28 2.75 -828.53 -2.28 -27.56 16 17 C 0.07 2.81 8.48 127.77 1.08 3.89 16 18 C 0.26 13.55 2.63 44.25 0.12 13.67 16 19 H 0.02 1.42 6.90 -2.39 -0.02 1.41 16 20 C -0.13 -6.48 8.97 71.98 0.65 -5.84 16 21 C -0.54 -29.73 7.95 25.60 0.20 -29.53 16 22 H 0.06 3.22 7.44 -2.91 -0.02 3.20 16 23 C 0.02 1.12 5.30 84.65 0.45 1.56 16 24 N -0.91 -51.74 11.32 21.45 0.24 -51.50 16 25 Si 0.97 42.87 29.54 68.60 2.03 44.90 16 26 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 27 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 28 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 29 C -0.15 -3.68 9.90 22.51 0.22 -3.46 16 30 C 0.10 2.21 6.81 39.01 0.27 2.48 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16 34 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.12 0.53 8.12 -2.39 -0.02 0.51 16 37 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.21 0.86 8.06 -2.91 -0.02 0.84 16 39 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 40 H 0.14 2.77 8.06 -2.91 -0.02 2.75 16 41 H 0.13 3.87 6.19 -2.91 -0.02 3.85 16 42 H 0.43 11.62 8.30 -92.71 -0.77 10.85 16 43 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.10 3.57 5.36 -2.48 -0.01 3.56 16 45 H 0.07 2.78 7.12 -2.39 -0.02 2.77 16 46 H 0.07 4.00 6.07 -2.39 -0.01 3.98 16 47 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.05 2.08 7.67 -2.39 -0.02 2.06 16 49 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 50 H 0.13 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -69.01 409.45 4.51 -64.50 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: 0.19 Total: 27.51 kcal Atomic # 6 Polarization: 9.93 SS G_CDS: 7.47 Total: 17.40 kcal Atomic # 7 Polarization: -103.83 SS G_CDS: -5.09 Total: -108.93 kcal Atomic # 8 Polarization: -45.30 SS G_CDS: -0.09 Total: -45.39 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -69.01 4.51 -64.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132301134.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.089 kcal (2) G-P(sol) polarization free energy of solvation -69.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds