Wall clock time and date at job start Tue Mar 31 2020 05:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46724 * 2 1 4 4 N 1.46498 * 109.46966 * 179.97438 * 3 2 1 5 5 C 1.36930 * 125.07854 * 264.98092 * 4 3 2 6 6 C 1.34224 * 109.92617 * 180.02562 * 5 4 3 7 7 C 1.46514 * 107.01672 * 359.97438 * 6 5 4 8 8 C 1.39704 * 133.90477 * 180.02562 * 7 6 5 9 9 C 1.36489 * 119.86657 * 179.97438 * 8 7 6 10 10 C 1.39488 * 120.45440 * 0.02562 * 9 8 7 11 11 N 1.39745 * 119.75563 * 179.97438 * 10 9 8 12 12 C 1.34772 * 119.99794 * 31.84879 * 11 10 9 13 13 O 1.21386 * 120.00143 * 5.38936 * 12 11 10 14 14 C 1.49326 * 120.00083 * 185.37971 * 12 11 10 15 15 O 1.21363 * 120.00002 * 5.75459 * 14 12 11 16 16 N 1.34772 * 120.00373 * 185.74718 * 14 12 11 17 17 C 1.46508 * 119.99816 * 5.67392 * 16 14 12 18 18 C 1.46496 * 120.00357 * 185.67215 * 16 14 12 19 19 H 1.09000 * 109.47119 * 359.97438 * 18 16 14 20 20 C 1.53007 * 109.47288 * 240.00009 * 18 16 14 21 21 C 1.50702 * 109.47589 * 120.00299 * 18 16 14 22 22 H 1.08002 * 119.99593 * 5.60542 * 21 18 16 23 23 C 1.37873 * 120.00228 * 185.60792 * 21 18 16 24 24 N 1.31516 * 119.99840 * 198.36723 * 23 21 18 25 25 Si 1.86802 * 120.00045 * 18.64485 * 23 21 18 26 26 H 1.48500 * 109.47174 * 179.72596 * 25 23 21 27 27 H 1.48500 * 109.47056 * 299.72378 * 25 23 21 28 28 H 1.48498 * 109.46983 * 59.72264 * 25 23 21 29 29 C 1.38449 * 120.49671 * 0.25271 * 10 9 8 30 30 C 1.37723 * 125.07064 * 84.99942 * 4 3 2 31 31 H 1.09006 * 109.46900 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47576 * 299.99979 * 1 2 3 33 33 H 1.09000 * 109.47003 * 60.00288 * 1 2 3 34 34 H 1.08999 * 109.47234 * 240.00298 * 2 1 3 35 35 H 1.08991 * 109.46936 * 119.99939 * 2 1 3 36 36 H 1.08999 * 109.47022 * 60.00169 * 3 2 1 37 37 H 1.09000 * 109.47145 * 299.99625 * 3 2 1 38 38 H 1.08000 * 125.03104 * 0.02562 * 5 4 3 39 39 H 1.08001 * 126.48725 * 179.97438 * 6 5 4 40 40 H 1.07994 * 120.06964 * 0.02966 * 8 7 6 41 41 H 1.07997 * 119.77659 * 180.02562 * 9 8 7 42 42 H 0.97002 * 120.00132 * 211.86206 * 11 10 9 43 43 H 1.08999 * 109.46982 * 275.61794 * 17 16 14 44 44 H 1.08998 * 109.46674 * 35.61563 * 17 16 14 45 45 H 1.09001 * 109.47337 * 155.61619 * 17 16 14 46 46 H 1.08995 * 109.47254 * 294.29869 * 20 18 16 47 47 H 1.09001 * 109.46528 * 54.29428 * 20 18 16 48 48 H 1.08998 * 109.47298 * 174.28948 * 20 18 16 49 49 H 0.97005 * 120.00171 * 355.23899 * 24 23 21 50 50 H 1.07994 * 120.13821 * 179.71853 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.2914 1.5408 1.1172 6 6 5.5871 1.5107 0.7682 7 6 5.6354 1.3821 -0.6905 8 6 6.6733 1.3001 -1.6220 9 6 6.3861 1.1824 -2.9511 10 6 5.0618 1.1439 -3.3875 11 7 4.7843 1.0236 -4.7518 12 6 5.6223 0.3349 -5.5517 13 8 6.5642 -0.2627 -5.0730 14 6 5.3920 0.3067 -7.0268 15 8 4.5145 0.9868 -7.5170 16 7 6.1586 -0.4739 -7.8138 17 6 7.1335 -1.3873 -7.2125 18 6 6.0170 -0.4091 -9.2705 19 1 5.2492 0.3202 -9.5288 20 6 5.6136 -1.7847 -9.8054 21 6 7.3297 0.0036 -9.8850 22 1 8.2068 0.1102 -9.2639 23 6 7.4109 0.2451 -11.2400 24 7 8.5820 0.2480 -11.8384 25 14 5.8582 0.5760 -12.2244 26 1 6.2144 0.8103 -13.6469 27 1 4.9516 -0.5962 -12.1278 28 1 5.1741 1.7769 -11.6811 29 6 4.0200 1.2297 -2.4796 30 6 4.2967 1.3442 -1.1219 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.6766 1.9563 -0.8900 38 1 3.9235 1.6294 2.1288 39 1 6.4337 1.5700 1.4362 40 1 7.7009 1.3288 -1.2910 41 1 7.1896 1.1187 -3.6699 42 1 3.9888 1.4360 -5.1232 43 1 8.0585 -0.8482 -7.0081 44 1 6.7317 -1.7857 -6.2809 45 1 7.3357 -2.2077 -7.9012 46 1 6.4252 -2.4924 -9.6367 47 1 4.7185 -2.1279 -9.2868 48 1 5.4097 -1.7135 -10.8738 49 1 9.3936 0.1490 -11.3164 50 1 2.9969 1.2038 -2.8243 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132301306.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:00 Heat of formation + Delta-G solvation = 5.566750 kcal Electronic energy + Delta-G solvation = -31346.443278 eV Core-core repulsion = 27146.923229 eV Total energy + Delta-G solvation = -4199.520050 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.58994 -40.63874 -38.67419 -37.19065 -35.96573 -35.37393 -33.99670 -32.76021 -31.75994 -30.29776 -30.05119 -28.44042 -26.41092 -26.27630 -25.09120 -24.44366 -23.02894 -22.16674 -21.84129 -20.85390 -19.96414 -19.20717 -17.69362 -17.59686 -17.38583 -16.95887 -16.23195 -16.11806 -15.60862 -15.29733 -15.20533 -15.11577 -14.43273 -14.11341 -13.95543 -13.81894 -13.57630 -13.53321 -13.36821 -13.21048 -12.82125 -12.68257 -12.58798 -12.44206 -12.23725 -12.06884 -11.95422 -11.77968 -11.59526 -11.57093 -11.34013 -11.33112 -11.08376 -10.88136 -10.54809 -10.20863 -9.97313 -9.82347 -9.53191 -9.15497 -8.96906 -8.38025 -8.04253 -7.92938 -7.63762 -6.55230 -4.19192 0.88095 1.46030 1.86038 2.39595 2.55974 2.73400 3.33244 3.44403 3.52484 3.57501 3.85529 3.91725 4.20856 4.36259 4.41170 4.49762 4.60464 4.66231 4.71960 4.79350 4.89055 5.05103 5.16991 5.18450 5.20185 5.29184 5.39390 5.42880 5.49287 5.55785 5.69469 5.75247 5.83315 5.85435 6.08546 6.19977 6.21749 6.25797 6.35731 6.43478 6.48971 6.52768 6.63767 6.68059 6.85195 6.93988 7.07753 7.10306 7.17784 7.26694 7.68533 7.86708 8.11135 8.28182 8.43870 8.81950 9.49246 10.83285 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.017618 B = 0.002110 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.920027 B =13265.753905 C =14160.060012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.143 4.143 3 C 0.111 3.889 4 N -0.485 5.485 5 C 0.043 3.957 6 C -0.198 4.198 7 C -0.125 4.125 8 C -0.051 4.051 9 C -0.144 4.144 10 C 0.178 3.822 11 N -0.650 5.650 12 C 0.509 3.491 13 O -0.493 6.493 14 C 0.495 3.505 15 O -0.539 6.539 16 N -0.547 5.547 17 C 0.087 3.913 18 C 0.232 3.768 19 H 0.057 0.943 20 C -0.163 4.163 21 C -0.615 4.615 22 H 0.063 0.937 23 C 0.038 3.962 24 N -0.896 5.896 25 Si 1.040 2.960 26 H -0.283 1.283 27 H -0.272 1.272 28 H -0.278 1.278 29 C -0.163 4.163 30 C 0.119 3.881 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.165 0.835 39 H 0.145 0.855 40 H 0.126 0.874 41 H 0.139 0.861 42 H 0.421 0.579 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.053 0.947 47 H 0.028 0.972 48 H 0.067 0.933 49 H 0.269 0.731 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.212 0.640 26.972 30.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.181 4.181 3 C -0.011 4.011 4 N -0.169 5.169 5 C -0.082 4.082 6 C -0.223 4.223 7 C -0.130 4.130 8 C -0.070 4.070 9 C -0.165 4.165 10 C 0.082 3.918 11 N -0.297 5.297 12 C 0.292 3.708 13 O -0.366 6.366 14 C 0.276 3.724 15 O -0.418 6.418 16 N -0.277 5.277 17 C -0.056 4.056 18 C 0.131 3.869 19 H 0.075 0.925 20 C -0.221 4.221 21 C -0.653 4.653 22 H 0.081 0.919 23 C -0.169 4.169 24 N -0.529 5.529 25 Si 0.867 3.133 26 H -0.208 1.208 27 H -0.199 1.199 28 H -0.204 1.204 29 C -0.187 4.187 30 C 0.012 3.988 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.103 0.897 38 H 0.182 0.818 39 H 0.163 0.837 40 H 0.144 0.856 41 H 0.156 0.844 42 H 0.258 0.742 43 H 0.075 0.925 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.072 0.928 47 H 0.048 0.952 48 H 0.086 0.914 49 H 0.079 0.921 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.831 0.814 25.418 28.949 hybrid contribution 0.302 -0.077 1.489 1.522 sum -13.529 0.738 26.908 30.127 Atomic orbital electron populations 1.21705 0.94492 1.02501 1.02121 1.21950 0.96584 0.96186 1.03423 1.21831 0.77194 0.98045 1.04052 1.43955 1.05379 1.63006 1.04574 1.21734 0.90475 1.04939 0.91003 1.21658 0.95875 1.11744 0.93010 1.19216 0.92047 1.08029 0.93683 1.20140 0.98085 0.97470 0.91334 1.20734 0.95343 1.03980 0.96396 1.17285 0.93263 0.99083 0.82152 1.43218 1.27664 1.52722 1.06060 1.20742 0.82661 0.78717 0.88657 1.90730 1.29043 1.40549 1.76324 1.19649 0.83770 0.82670 0.86319 1.90709 1.32619 1.43380 1.75083 1.47979 1.34741 1.36520 1.08413 1.21913 0.92475 0.93341 0.97823 1.19411 0.99272 0.94508 0.73710 0.92530 1.22530 0.98947 0.99102 1.01510 1.22131 0.94623 1.52929 0.95572 0.91855 1.25688 1.03084 0.92932 0.95159 1.70872 0.98557 1.45431 1.38058 0.84126 0.74987 0.77723 0.76415 1.20828 1.19866 1.20421 1.19470 0.98227 1.11778 0.89186 1.17767 0.90044 1.03281 0.87671 0.92005 0.92445 0.92281 0.91117 0.91305 0.89332 0.89686 0.81812 0.83735 0.85572 0.84366 0.74166 0.92454 0.90726 0.91092 0.92824 0.95245 0.91398 0.92055 0.86017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.91 37.16 0.37 -0.30 16 2 C -0.14 -0.84 6.26 -26.73 -0.17 -1.01 16 3 C 0.11 0.66 6.00 -4.04 -0.02 0.64 16 4 N -0.49 -4.35 2.78 -114.41 -0.32 -4.67 16 5 C 0.04 0.34 11.28 -16.69 -0.19 0.15 16 6 C -0.20 -1.89 11.08 -37.66 -0.42 -2.31 16 7 C -0.12 -1.51 6.37 -105.09 -0.67 -2.18 16 8 C -0.05 -0.64 10.04 -39.67 -0.40 -1.03 16 9 C -0.14 -2.03 8.58 -39.75 -0.34 -2.37 16 10 C 0.18 2.43 6.30 -83.71 -0.53 1.91 16 11 N -0.65 -9.31 5.31 -10.28 -0.05 -9.37 16 12 C 0.51 8.79 7.44 -11.65 -0.09 8.71 16 13 O -0.49 -8.89 10.94 5.47 0.06 -8.84 16 14 C 0.50 10.06 7.72 -11.65 -0.09 9.97 16 15 O -0.54 -11.83 15.85 5.49 0.09 -11.75 16 16 N -0.55 -11.75 2.75 -175.81 -0.48 -12.24 16 17 C 0.09 1.65 8.37 59.85 0.50 2.15 16 18 C 0.23 5.58 2.21 -69.08 -0.15 5.43 16 19 H 0.06 1.45 5.55 -51.93 -0.29 1.16 16 20 C -0.16 -3.49 8.74 37.16 0.32 -3.16 16 21 C -0.61 -16.86 8.66 -34.44 -0.30 -17.16 16 22 H 0.06 1.87 7.80 -52.49 -0.41 1.46 16 23 C 0.04 1.07 5.34 -17.82 -0.10 0.98 16 24 N -0.90 -26.78 13.70 55.43 0.76 -26.02 16 25 Si 1.04 24.79 26.46 -169.99 -4.50 20.29 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 27 H -0.27 -5.91 5.54 56.52 0.31 -5.60 16 28 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 29 C -0.16 -1.92 9.89 -39.21 -0.39 -2.31 16 30 C 0.12 1.38 6.81 -84.00 -0.57 0.81 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.36 8.12 -51.93 -0.42 -0.06 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.16 0.75 8.06 -52.49 -0.42 0.33 16 39 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 40 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 41 H 0.14 2.13 6.27 -52.49 -0.33 1.80 16 42 H 0.42 5.32 8.31 -40.82 -0.34 4.98 16 43 H 0.06 1.12 8.09 -51.93 -0.42 0.70 16 44 H 0.07 1.29 6.00 -51.93 -0.31 0.97 16 45 H 0.07 1.30 6.55 -51.93 -0.34 0.96 16 46 H 0.05 1.11 6.89 -51.93 -0.36 0.75 16 47 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.07 1.48 4.90 -51.93 -0.25 1.22 16 49 H 0.27 8.02 8.73 -40.82 -0.36 7.67 16 50 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 404.96 15.07 6.10 6.10 Total: -1.00 -32.69 404.96 -8.93 -41.62 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -7.36 Total: 5.97 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -3.22 Total: -1.10 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -0.10 Total: -52.30 kcal Atomic # 8 Polarization: -20.73 SS G_CDS: 0.15 Total: -20.58 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -4.50 Total: 20.29 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.69 -8.93 -41.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132301306.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.184 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds