Wall clock time and date at job start Tue Mar 31 2020 05:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46724 * 2 1 4 4 N 1.46498 * 109.46966 * 179.97438 * 3 2 1 5 5 C 1.36930 * 125.07854 * 264.98092 * 4 3 2 6 6 C 1.34224 * 109.92617 * 180.02562 * 5 4 3 7 7 C 1.46514 * 107.01672 * 359.97438 * 6 5 4 8 8 C 1.39704 * 133.90477 * 180.02562 * 7 6 5 9 9 C 1.36489 * 119.86657 * 179.97438 * 8 7 6 10 10 C 1.39488 * 120.45440 * 0.02562 * 9 8 7 11 11 N 1.39745 * 119.75563 * 179.97438 * 10 9 8 12 12 C 1.34772 * 119.99794 * 31.84879 * 11 10 9 13 13 O 1.21386 * 120.00143 * 5.38936 * 12 11 10 14 14 C 1.49326 * 120.00083 * 185.37971 * 12 11 10 15 15 O 1.21363 * 120.00002 * 5.75459 * 14 12 11 16 16 N 1.34772 * 120.00373 * 185.74718 * 14 12 11 17 17 C 1.46508 * 119.99816 * 5.67392 * 16 14 12 18 18 C 1.46496 * 120.00357 * 185.67215 * 16 14 12 19 19 H 1.09000 * 109.47119 * 359.97438 * 18 16 14 20 20 C 1.53007 * 109.47288 * 240.00009 * 18 16 14 21 21 C 1.50702 * 109.47589 * 120.00299 * 18 16 14 22 22 H 1.08002 * 119.99593 * 5.60542 * 21 18 16 23 23 C 1.37873 * 120.00228 * 185.60792 * 21 18 16 24 24 N 1.31516 * 119.99840 * 198.36723 * 23 21 18 25 25 Si 1.86802 * 120.00045 * 18.64485 * 23 21 18 26 26 H 1.48500 * 109.47174 * 179.72596 * 25 23 21 27 27 H 1.48500 * 109.47056 * 299.72378 * 25 23 21 28 28 H 1.48498 * 109.46983 * 59.72264 * 25 23 21 29 29 C 1.38449 * 120.49671 * 0.25271 * 10 9 8 30 30 C 1.37723 * 125.07064 * 84.99942 * 4 3 2 31 31 H 1.09006 * 109.46900 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47576 * 299.99979 * 1 2 3 33 33 H 1.09000 * 109.47003 * 60.00288 * 1 2 3 34 34 H 1.08999 * 109.47234 * 240.00298 * 2 1 3 35 35 H 1.08991 * 109.46936 * 119.99939 * 2 1 3 36 36 H 1.08999 * 109.47022 * 60.00169 * 3 2 1 37 37 H 1.09000 * 109.47145 * 299.99625 * 3 2 1 38 38 H 1.08000 * 125.03104 * 0.02562 * 5 4 3 39 39 H 1.08001 * 126.48725 * 179.97438 * 6 5 4 40 40 H 1.07994 * 120.06964 * 0.02966 * 8 7 6 41 41 H 1.07997 * 119.77659 * 180.02562 * 9 8 7 42 42 H 0.97002 * 120.00132 * 211.86206 * 11 10 9 43 43 H 1.08999 * 109.46982 * 275.61794 * 17 16 14 44 44 H 1.08998 * 109.46674 * 35.61563 * 17 16 14 45 45 H 1.09001 * 109.47337 * 155.61619 * 17 16 14 46 46 H 1.08995 * 109.47254 * 294.29869 * 20 18 16 47 47 H 1.09001 * 109.46528 * 54.29428 * 20 18 16 48 48 H 1.08998 * 109.47298 * 174.28948 * 20 18 16 49 49 H 0.97005 * 120.00171 * 355.23899 * 24 23 21 50 50 H 1.07994 * 120.13821 * 179.71853 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.2914 1.5408 1.1172 6 6 5.5871 1.5107 0.7682 7 6 5.6354 1.3821 -0.6905 8 6 6.6733 1.3001 -1.6220 9 6 6.3861 1.1824 -2.9511 10 6 5.0618 1.1439 -3.3875 11 7 4.7843 1.0236 -4.7518 12 6 5.6223 0.3349 -5.5517 13 8 6.5642 -0.2627 -5.0730 14 6 5.3920 0.3067 -7.0268 15 8 4.5145 0.9868 -7.5170 16 7 6.1586 -0.4739 -7.8138 17 6 7.1335 -1.3873 -7.2125 18 6 6.0170 -0.4091 -9.2705 19 1 5.2492 0.3202 -9.5288 20 6 5.6136 -1.7847 -9.8054 21 6 7.3297 0.0036 -9.8850 22 1 8.2068 0.1102 -9.2639 23 6 7.4109 0.2451 -11.2400 24 7 8.5820 0.2480 -11.8384 25 14 5.8582 0.5760 -12.2244 26 1 6.2144 0.8103 -13.6469 27 1 4.9516 -0.5962 -12.1278 28 1 5.1741 1.7769 -11.6811 29 6 4.0200 1.2297 -2.4796 30 6 4.2967 1.3442 -1.1219 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 1.6766 1.9563 0.8900 37 1 1.6766 1.9563 -0.8900 38 1 3.9235 1.6294 2.1288 39 1 6.4337 1.5700 1.4362 40 1 7.7009 1.3288 -1.2910 41 1 7.1896 1.1187 -3.6699 42 1 3.9888 1.4360 -5.1232 43 1 8.0585 -0.8482 -7.0081 44 1 6.7317 -1.7857 -6.2809 45 1 7.3357 -2.2077 -7.9012 46 1 6.4252 -2.4924 -9.6367 47 1 4.7185 -2.1279 -9.2868 48 1 5.4097 -1.7135 -10.8738 49 1 9.3936 0.1490 -11.3164 50 1 2.9969 1.2038 -2.8243 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132301306.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:59 Heat of formation + Delta-G solvation = -13.592816 kcal Electronic energy + Delta-G solvation = -31347.274099 eV Core-core repulsion = 27146.923229 eV Total energy + Delta-G solvation = -4200.350871 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.50157 -41.92350 -40.12229 -38.31339 -37.57412 -36.18426 -35.06647 -34.69767 -32.53766 -32.15730 -30.83903 -29.42219 -27.98223 -26.91881 -26.83896 -26.05491 -23.86367 -23.26893 -22.60285 -21.94085 -21.07292 -20.62120 -19.62359 -19.02430 -18.52412 -17.92497 -17.69131 -17.41571 -16.65897 -16.58427 -16.09249 -15.87559 -15.76528 -15.47086 -15.18492 -14.93282 -14.82605 -14.63157 -14.49110 -14.33952 -14.15772 -14.03369 -13.84634 -13.53187 -13.42117 -13.25842 -13.16559 -12.94649 -12.82830 -12.70661 -12.46831 -12.36672 -12.20282 -11.96257 -11.84980 -11.71893 -11.65573 -11.21628 -11.18648 -10.52137 -10.45935 -10.41658 -9.74854 -8.95092 -8.77672 -8.47970 -6.44167 -0.15983 0.35202 0.66648 1.18971 1.43608 1.53638 1.71082 1.79001 1.89805 2.06419 2.42520 2.48547 2.88462 3.00498 3.19671 3.70270 3.75086 3.93478 3.98953 4.07589 4.25557 4.27612 4.28469 4.32849 4.40157 4.45599 4.52486 4.56712 4.60740 4.63942 4.69345 4.71015 4.81607 4.88694 4.96702 5.01612 5.04411 5.11899 5.14548 5.15448 5.23232 5.27671 5.35377 5.47084 5.53692 5.69716 5.74915 5.83343 5.96363 6.00228 6.21086 6.33600 6.44946 6.47570 6.64198 6.86339 7.32540 8.57663 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.017618 B = 0.002110 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.920027 B =13265.753905 C =14160.060012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.138 4.138 3 C 0.105 3.895 4 N -0.483 5.483 5 C 0.061 3.939 6 C -0.220 4.220 7 C -0.139 4.139 8 C -0.058 4.058 9 C -0.163 4.163 10 C 0.150 3.850 11 N -0.632 5.632 12 C 0.515 3.485 13 O -0.506 6.506 14 C 0.493 3.507 15 O -0.556 6.556 16 N -0.559 5.559 17 C 0.095 3.905 18 C 0.231 3.769 19 H 0.046 0.954 20 C -0.155 4.155 21 C -0.613 4.613 22 H 0.027 0.973 23 C -0.008 4.008 24 N -0.925 5.925 25 Si 1.074 2.926 26 H -0.283 1.283 27 H -0.234 1.234 28 H -0.275 1.275 29 C -0.149 4.149 30 C 0.101 3.899 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.118 0.882 37 H 0.088 0.912 38 H 0.206 0.794 39 H 0.162 0.838 40 H 0.139 0.861 41 H 0.117 0.883 42 H 0.428 0.572 43 H 0.042 0.958 44 H 0.093 0.907 45 H 0.074 0.926 46 H 0.055 0.945 47 H 0.055 0.945 48 H 0.067 0.933 49 H 0.255 0.745 50 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.407 0.550 29.819 34.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.176 4.176 3 C -0.015 4.015 4 N -0.166 5.166 5 C -0.064 4.064 6 C -0.245 4.245 7 C -0.145 4.145 8 C -0.077 4.077 9 C -0.183 4.183 10 C 0.055 3.945 11 N -0.279 5.279 12 C 0.298 3.702 13 O -0.380 6.380 14 C 0.275 3.725 15 O -0.437 6.437 16 N -0.289 5.289 17 C -0.047 4.047 18 C 0.129 3.871 19 H 0.063 0.937 20 C -0.213 4.213 21 C -0.651 4.651 22 H 0.046 0.954 23 C -0.208 4.208 24 N -0.560 5.560 25 Si 0.895 3.105 26 H -0.208 1.208 27 H -0.158 1.158 28 H -0.200 1.200 29 C -0.172 4.172 30 C -0.006 4.006 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.136 0.864 37 H 0.106 0.894 38 H 0.223 0.777 39 H 0.180 0.820 40 H 0.157 0.843 41 H 0.135 0.865 42 H 0.267 0.733 43 H 0.061 0.939 44 H 0.112 0.888 45 H 0.092 0.908 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.085 0.915 49 H 0.064 0.936 50 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -17.057 0.719 28.327 33.073 hybrid contribution 1.282 0.027 0.878 1.554 sum -15.775 0.746 29.204 33.201 Atomic orbital electron populations 1.21684 0.93315 1.02610 1.02895 1.21882 0.97519 0.95892 1.02319 1.22103 0.75334 0.98364 1.05711 1.44256 1.06577 1.61802 1.03930 1.22427 0.89880 1.01802 0.92246 1.21965 0.97507 1.13114 0.91867 1.19608 0.92186 1.07466 0.95190 1.20286 0.99176 0.97344 0.90905 1.20647 0.95159 1.05708 0.96831 1.17351 0.93732 1.01679 0.81695 1.43001 1.27032 1.51593 1.06298 1.20095 0.83207 0.79530 0.87406 1.90727 1.29692 1.41595 1.76018 1.20133 0.83061 0.81648 0.87692 1.90681 1.33291 1.43763 1.75916 1.47991 1.35685 1.37478 1.07773 1.21923 0.91539 0.92730 0.98533 1.19223 0.96715 0.95777 0.75355 0.93667 1.22382 1.00172 0.97223 1.01510 1.22255 0.95146 1.52246 0.95462 0.95416 1.27002 1.04908 0.92188 0.96752 1.70992 0.98828 1.48027 1.38167 0.83713 0.72526 0.79210 0.75015 1.20849 1.15778 1.20050 1.19594 0.98551 1.09863 0.89207 1.17923 0.90681 1.03723 0.88316 0.92283 0.90970 0.92207 0.93318 0.91329 0.86406 0.89383 0.77698 0.82018 0.84337 0.86482 0.73275 0.93899 0.88837 0.90752 0.92595 0.92632 0.91479 0.93606 0.84084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 71.98 0.71 -0.20 16 2 C -0.14 -1.26 6.26 30.60 0.19 -1.07 16 3 C 0.11 0.90 6.00 86.38 0.52 1.41 16 4 N -0.48 -7.17 2.78 -515.89 -1.43 -8.61 16 5 C 0.06 0.75 11.28 82.98 0.94 1.68 16 6 C -0.22 -3.67 11.08 23.51 0.26 -3.41 16 7 C -0.14 -3.21 6.37 -20.17 -0.13 -3.33 16 8 C -0.06 -1.46 10.04 22.22 0.22 -1.24 16 9 C -0.16 -4.74 8.58 22.16 0.19 -4.55 16 10 C 0.15 4.11 6.30 38.23 0.24 4.35 16 11 N -0.63 -18.13 5.31 -304.78 -1.62 -19.75 16 12 C 0.52 18.02 7.44 87.23 0.65 18.67 16 13 O -0.51 -18.65 10.94 -3.36 -0.04 -18.69 16 14 C 0.49 20.13 7.72 87.23 0.67 20.81 16 15 O -0.56 -24.38 15.85 -3.29 -0.05 -24.43 16 16 N -0.56 -24.22 2.75 -828.51 -2.28 -26.50 16 17 C 0.09 3.63 8.37 127.77 1.07 4.70 16 18 C 0.23 11.09 2.21 44.25 0.10 11.19 16 19 H 0.05 2.29 5.55 -2.39 -0.01 2.28 16 20 C -0.15 -6.38 8.74 71.98 0.63 -5.75 16 21 C -0.61 -34.49 8.66 25.60 0.22 -34.27 16 22 H 0.03 1.72 7.80 -2.91 -0.02 1.69 16 23 C -0.01 -0.47 5.34 84.65 0.45 -0.02 16 24 N -0.93 -56.91 13.70 21.45 0.29 -56.61 16 25 Si 1.07 49.50 26.46 68.60 1.82 51.31 16 26 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 27 H -0.23 -9.30 5.54 99.48 0.55 -8.75 16 28 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 29 C -0.15 -3.36 9.89 22.51 0.22 -3.13 16 30 C 0.10 2.18 6.81 39.01 0.27 2.45 16 31 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 32 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 33 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.12 0.37 8.12 -2.39 -0.02 0.35 16 37 H 0.09 0.73 8.14 -2.39 -0.02 0.72 16 38 H 0.21 0.74 8.06 -2.91 -0.02 0.72 16 39 H 0.16 2.00 8.06 -2.91 -0.02 1.98 16 40 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 41 H 0.12 3.84 6.27 -2.91 -0.02 3.83 16 42 H 0.43 10.66 8.31 -92.71 -0.77 9.89 16 43 H 0.04 1.74 8.09 -2.39 -0.02 1.72 16 44 H 0.09 3.22 6.00 -2.39 -0.01 3.20 16 45 H 0.07 2.75 6.55 -2.39 -0.02 2.73 16 46 H 0.06 2.25 6.89 -2.39 -0.02 2.23 16 47 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.07 2.75 4.90 -2.39 -0.01 2.74 16 49 H 0.25 15.91 8.73 -92.70 -0.81 15.10 16 50 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -73.09 404.96 4.11 -68.98 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: 0.00 Total: 26.01 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 7.43 Total: 8.29 kcal Atomic # 7 Polarization: -106.43 SS G_CDS: -5.04 Total: -111.47 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -0.09 Total: -43.12 kcal Atomic # 14 Polarization: 49.50 SS G_CDS: 1.82 Total: 51.31 kcal Total: -73.09 4.11 -68.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132301306.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.384 kcal (2) G-P(sol) polarization free energy of solvation -73.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds