Wall clock time and date at job start Tue Mar 31 2020 05:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30354 * 125.48082 * 2 1 4 4 C 1.34154 * 108.90848 * 180.02562 * 3 2 1 5 5 C 1.35819 * 107.51015 * 359.97438 * 4 3 2 6 6 C 1.47772 * 126.58020 * 180.02562 * 5 4 3 7 7 C 1.39652 * 120.06545 * 179.97438 * 6 5 4 8 8 C 1.37784 * 119.93157 * 180.02562 * 7 6 5 9 9 C 1.39075 * 120.06544 * 0.02562 * 8 7 6 10 10 N 1.39615 * 119.92753 * 180.02562 * 9 8 7 11 11 C 1.34771 * 120.00178 * 147.25100 * 10 9 8 12 12 O 1.21386 * 120.00069 * 354.64041 * 11 10 9 13 13 C 1.49325 * 120.00308 * 174.63852 * 11 10 9 14 14 O 1.21365 * 119.99735 * 6.43180 * 13 11 10 15 15 N 1.34768 * 120.00441 * 186.43179 * 13 11 10 16 16 C 1.46500 * 119.99849 * 5.08648 * 15 13 11 17 17 C 1.46498 * 120.00297 * 185.08639 * 15 13 11 18 18 H 1.09001 * 109.46781 * 0.02562 * 17 15 13 19 19 C 1.53000 * 109.47524 * 239.99701 * 17 15 13 20 20 C 1.50706 * 109.46977 * 119.99744 * 17 15 13 21 21 H 1.07994 * 120.00081 * 0.02562 * 20 17 15 22 22 C 1.37874 * 119.99767 * 180.02562 * 20 17 15 23 23 N 1.31517 * 120.00297 * 0.02562 * 22 20 17 24 24 Si 1.86804 * 119.99876 * 180.02562 * 22 20 17 25 25 H 1.48499 * 109.47067 * 270.00311 * 24 22 20 26 26 H 1.48496 * 109.47199 * 29.99858 * 24 22 20 27 27 H 1.48505 * 109.47076 * 150.00229 * 24 22 20 28 28 C 1.39066 * 120.13990 * 0.26891 * 9 8 7 29 29 C 1.37789 * 120.06705 * 359.45313 * 28 9 8 30 30 O 1.34034 * 125.47826 * 180.33197 * 2 1 3 31 31 H 1.09004 * 109.47228 * 89.97638 * 1 2 3 32 32 H 1.09000 * 109.47226 * 209.97668 * 1 2 3 33 33 H 1.08999 * 109.47089 * 329.97860 * 1 2 3 34 34 H 1.07997 * 126.24285 * 179.97438 * 4 3 2 35 35 H 1.08001 * 120.03383 * 0.04873 * 7 6 5 36 36 H 1.07995 * 119.96851 * 179.97438 * 8 7 6 37 37 H 0.97001 * 119.99967 * 327.24652 * 10 9 8 38 38 H 1.08999 * 109.47424 * 275.42092 * 16 15 13 39 39 H 1.08997 * 109.47300 * 35.42130 * 16 15 13 40 40 H 1.09000 * 109.47537 * 155.42020 * 16 15 13 41 41 H 1.08998 * 109.47427 * 179.97438 * 19 17 15 42 42 H 1.08995 * 109.47142 * 300.00648 * 19 17 15 43 43 H 1.09006 * 109.46731 * 59.99812 * 19 17 15 44 44 H 0.97003 * 119.99984 * 179.97438 * 23 22 20 45 45 H 1.08001 * 119.96668 * 179.70660 * 28 9 8 46 46 H 1.08003 * 120.03413 * 180.29352 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2636 1.0615 0.0000 4 6 3.5494 0.6788 -0.0006 5 6 3.5716 -0.6792 -0.0003 6 6 4.7725 -1.5403 -0.0003 7 6 4.6368 -2.9302 0.0005 8 6 5.7584 -3.7305 0.0011 9 6 7.0247 -3.1554 0.0015 10 7 8.1592 -3.9690 0.0016 11 6 9.2791 -3.5639 -0.6295 12 8 9.2725 -2.5387 -1.2793 13 6 10.5280 -4.3763 -0.5293 14 8 10.5059 -5.4578 0.0210 15 7 11.6797 -3.9085 -1.0499 16 6 11.7331 -2.5578 -1.6145 17 6 12.8784 -4.7508 -1.0511 18 1 12.6469 -5.7128 -0.5940 19 6 13.9876 -4.0607 -0.2546 20 6 13.3388 -4.9671 -2.4698 21 1 12.7934 -4.5214 -3.2884 22 6 14.4564 -5.7340 -2.7224 23 7 15.1203 -6.2772 -1.7255 24 14 15.0275 -6.0015 -4.4808 25 1 14.3748 -7.2152 -5.0340 26 1 14.6600 -4.8225 -5.3054 27 1 16.5017 -6.1795 -4.5007 28 6 7.1632 -1.7716 0.0069 29 6 6.0454 -0.9660 0.0005 30 8 2.2849 -1.0915 -0.0063 31 1 -0.3634 0.0004 -1.0277 32 1 -0.3634 -0.8902 0.5135 33 1 -0.3633 0.8898 0.5142 34 1 4.4098 1.3316 -0.0011 35 1 3.6537 -3.3773 0.0002 36 1 5.6542 -4.8054 0.0021 37 1 8.1415 -4.8259 0.4559 38 1 11.3898 -2.5824 -2.6487 39 1 11.0905 -1.8957 -1.0341 40 1 12.7586 -2.1900 -1.5807 41 1 14.8793 -4.6876 -0.2552 42 1 14.2189 -3.0988 -0.7121 43 1 13.6545 -3.9042 0.7714 44 1 15.9064 -6.8170 -1.9034 45 1 8.1478 -1.3280 0.0120 46 1 6.1535 0.1086 0.0000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190157153.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:12 Heat of formation + Delta-G solvation = -3.465447 kcal Electronic energy + Delta-G solvation = -30270.962029 eV Core-core repulsion = 25935.217219 eV Total energy + Delta-G solvation = -4335.744810 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.59305 -40.99849 -39.35880 -37.98153 -36.01336 -35.14440 -34.97809 -32.89034 -32.67956 -31.34682 -30.48879 -29.58524 -27.28947 -26.32944 -25.34701 -24.79818 -23.74331 -22.95067 -21.89612 -21.38066 -20.64443 -19.34437 -18.18421 -17.62965 -17.26711 -17.10108 -16.40817 -16.30146 -16.03406 -15.88065 -15.20980 -14.98686 -14.50973 -14.32677 -14.23728 -14.01583 -13.69391 -13.65037 -13.53505 -13.28294 -13.06024 -13.03406 -12.68064 -12.60158 -12.44626 -11.83590 -11.67035 -11.64233 -11.61193 -11.13818 -10.93035 -10.90180 -10.86872 -10.83746 -10.76239 -10.30606 -10.25715 -9.40733 -9.33059 -9.29306 -8.95672 -8.52103 -7.99172 -7.81846 -6.16684 -4.25372 0.26309 1.08799 1.41572 1.85757 2.21238 2.39911 2.55948 3.23183 3.29892 3.32556 3.43484 3.65146 3.67324 3.89824 4.26534 4.32592 4.51334 4.61136 4.65757 4.68600 4.85692 4.90598 4.97753 5.08775 5.14550 5.15216 5.22846 5.41074 5.52345 5.69148 5.87744 5.91645 5.96309 5.99024 6.08804 6.15689 6.19993 6.44105 6.59326 6.66744 6.68596 6.89003 6.99241 7.19084 7.29482 7.37147 7.60119 7.73768 7.90628 8.02015 8.26914 8.49797 8.79829 9.41299 10.88680 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.026655 B = 0.001696 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.198737 B =16507.121796 C =16619.969551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.185 3.815 3 N -0.481 5.481 4 C -0.028 4.028 5 C 0.007 3.993 6 C -0.042 4.042 7 C -0.076 4.076 8 C -0.142 4.142 9 C 0.169 3.831 10 N -0.654 5.654 11 C 0.508 3.492 12 O -0.494 6.494 13 C 0.494 3.506 14 O -0.536 6.536 15 N -0.550 5.550 16 C 0.084 3.916 17 C 0.254 3.746 18 H 0.067 0.933 19 C -0.148 4.148 20 C -0.530 4.530 21 H 0.062 0.938 22 C 0.066 3.934 23 N -0.887 5.887 24 Si 0.902 3.098 25 H -0.279 1.279 26 H -0.273 1.273 27 H -0.285 1.285 28 C -0.119 4.119 29 C -0.070 4.070 30 O -0.198 6.198 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.187 0.813 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.425 0.575 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.097 0.903 42 H 0.034 0.966 43 H 0.014 0.986 44 H 0.265 0.735 45 H 0.145 0.855 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.095 10.688 5.671 26.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.021 4.021 3 N -0.210 5.210 4 C -0.167 4.167 5 C -0.045 4.045 6 C -0.044 4.044 7 C -0.095 4.095 8 C -0.163 4.163 9 C 0.073 3.927 10 N -0.300 5.300 11 C 0.292 3.708 12 O -0.367 6.367 13 C 0.274 3.726 14 O -0.415 6.415 15 N -0.281 5.281 16 C -0.059 4.059 17 C 0.155 3.845 18 H 0.085 0.915 19 C -0.206 4.206 20 C -0.568 4.568 21 H 0.080 0.920 22 C -0.136 4.136 23 N -0.524 5.524 24 Si 0.729 3.271 25 H -0.205 1.205 26 H -0.198 1.198 27 H -0.210 1.210 28 C -0.139 4.139 29 C -0.089 4.089 30 O -0.085 6.085 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.120 0.880 34 H 0.204 0.796 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.263 0.737 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.116 0.884 42 H 0.053 0.947 43 H 0.033 0.967 44 H 0.075 0.925 45 H 0.163 0.837 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -24.055 11.286 5.507 27.136 hybrid contribution 0.686 -1.238 -0.882 1.667 sum -23.369 10.048 4.625 25.855 Atomic orbital electron populations 1.20270 0.81206 1.05172 1.04756 1.26337 0.96459 0.78493 1.00773 1.70338 1.02208 1.30158 1.18317 1.23322 0.95029 0.92465 1.05909 1.21417 0.81999 0.93823 1.07304 1.17544 0.88373 0.91804 1.06675 1.20984 0.98717 0.91923 0.97830 1.20865 0.90367 1.00593 1.04446 1.17942 0.86171 0.90633 0.97926 1.43344 1.10292 1.22915 1.53470 1.20996 0.85116 0.85926 0.78750 1.90727 1.83927 1.24321 1.37773 1.19554 0.84317 0.86609 0.82127 1.90729 1.85041 1.21764 1.43930 1.48278 1.10184 1.16229 1.53371 1.21914 1.02435 0.82556 0.98977 1.19202 0.78347 0.90016 0.96917 0.91504 1.22105 1.02425 1.00383 0.95678 1.21279 1.11655 1.32420 0.91451 0.91989 1.24883 0.96060 0.95069 0.97625 1.69872 1.18913 1.33010 1.30639 0.86439 0.77788 0.78705 0.84165 1.20548 1.19801 1.21020 1.21098 0.99972 0.91597 1.01227 1.20876 0.89807 1.00167 0.98022 1.84424 1.16345 1.37535 1.70198 0.88868 0.89300 0.88031 0.79609 0.85065 0.84693 0.73704 0.92549 0.91010 0.90946 0.88436 0.94721 0.96705 0.92519 0.83704 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.24 10.51 36.00 0.38 0.14 16 2 C 0.18 1.69 8.33 -12.91 -0.11 1.59 16 3 N -0.48 -5.29 11.27 -10.80 -0.12 -5.41 16 4 C -0.03 -0.28 11.29 -17.40 -0.20 -0.48 16 5 C 0.01 0.08 7.07 -36.55 -0.26 -0.18 16 6 C -0.04 -0.44 5.87 -104.95 -0.62 -1.05 16 7 C -0.08 -0.73 9.72 -39.22 -0.38 -1.11 16 8 C -0.14 -1.41 9.94 -39.44 -0.39 -1.80 16 9 C 0.17 1.99 6.29 -83.70 -0.53 1.47 16 10 N -0.65 -8.55 5.32 -10.26 -0.05 -8.60 16 11 C 0.51 8.28 7.43 -11.65 -0.09 8.19 16 12 O -0.49 -8.30 11.04 5.46 0.06 -8.24 16 13 C 0.49 9.83 7.72 -11.65 -0.09 9.74 16 14 O -0.54 -11.80 15.83 5.48 0.09 -11.72 16 15 N -0.55 -11.64 2.75 -175.82 -0.48 -12.12 16 16 C 0.08 1.52 8.44 59.85 0.51 2.02 16 17 C 0.25 6.28 2.62 -69.08 -0.18 6.10 16 18 H 0.07 1.87 6.91 -51.93 -0.36 1.51 16 19 C -0.15 -3.39 8.96 37.16 0.33 -3.06 16 20 C -0.53 -13.99 8.37 -34.44 -0.29 -14.27 16 21 H 0.06 1.63 7.64 -52.49 -0.40 1.23 16 22 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 23 N -0.89 -24.29 11.32 55.43 0.63 -23.66 16 24 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 C -0.12 -1.38 8.63 -39.44 -0.34 -1.72 16 29 C -0.07 -0.69 9.56 -39.22 -0.38 -1.07 16 30 O -0.20 -2.04 10.59 4.13 0.04 -2.00 16 31 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.19 1.42 7.29 -52.49 -0.38 1.03 16 35 H 0.13 1.07 7.94 -52.49 -0.42 0.65 16 36 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 37 H 0.42 4.94 8.29 -40.82 -0.34 4.61 16 38 H 0.06 1.03 8.10 -51.93 -0.42 0.61 16 39 H 0.07 1.16 5.96 -51.93 -0.31 0.85 16 40 H 0.07 1.28 6.44 -51.93 -0.33 0.95 16 41 H 0.10 2.46 6.07 -51.93 -0.32 2.15 16 42 H 0.03 0.74 6.67 -51.93 -0.35 0.39 16 43 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 45 H 0.15 1.78 6.38 -52.49 -0.33 1.44 16 46 H 0.13 1.01 7.03 -52.48 -0.37 0.64 16 LS Contribution 388.70 15.07 5.86 5.86 Total: -1.00 -31.93 388.70 -7.30 -39.23 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.58 Total: 4.84 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: -2.72 Total: 6.18 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -0.03 Total: -49.79 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: 0.19 Total: -21.96 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.93 -7.30 -39.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190157153.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.761 kcal (2) G-P(sol) polarization free energy of solvation -31.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds