Wall clock time and date at job start Tue Mar 31 2020 05:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30354 * 125.48082 * 2 1 4 4 C 1.34154 * 108.90848 * 180.02562 * 3 2 1 5 5 C 1.35819 * 107.51015 * 359.97438 * 4 3 2 6 6 C 1.47772 * 126.58020 * 180.02562 * 5 4 3 7 7 C 1.39652 * 120.06545 * 179.97438 * 6 5 4 8 8 C 1.37784 * 119.93157 * 180.02562 * 7 6 5 9 9 C 1.39075 * 120.06544 * 0.02562 * 8 7 6 10 10 N 1.39615 * 119.92753 * 180.02562 * 9 8 7 11 11 C 1.34771 * 120.00178 * 147.25100 * 10 9 8 12 12 O 1.21386 * 120.00069 * 354.64041 * 11 10 9 13 13 C 1.49325 * 120.00308 * 174.63852 * 11 10 9 14 14 O 1.21365 * 119.99735 * 6.43180 * 13 11 10 15 15 N 1.34768 * 120.00441 * 186.43179 * 13 11 10 16 16 C 1.46500 * 119.99849 * 5.08648 * 15 13 11 17 17 C 1.46498 * 120.00297 * 185.08639 * 15 13 11 18 18 H 1.09001 * 109.46781 * 0.02562 * 17 15 13 19 19 C 1.53000 * 109.47524 * 239.99701 * 17 15 13 20 20 C 1.50706 * 109.46977 * 119.99744 * 17 15 13 21 21 H 1.07994 * 120.00081 * 0.02562 * 20 17 15 22 22 C 1.37874 * 119.99767 * 180.02562 * 20 17 15 23 23 N 1.31517 * 120.00297 * 0.02562 * 22 20 17 24 24 Si 1.86804 * 119.99876 * 180.02562 * 22 20 17 25 25 H 1.48499 * 109.47067 * 270.00311 * 24 22 20 26 26 H 1.48496 * 109.47199 * 29.99858 * 24 22 20 27 27 H 1.48505 * 109.47076 * 150.00229 * 24 22 20 28 28 C 1.39066 * 120.13990 * 0.26891 * 9 8 7 29 29 C 1.37789 * 120.06705 * 359.45313 * 28 9 8 30 30 O 1.34034 * 125.47826 * 180.33197 * 2 1 3 31 31 H 1.09004 * 109.47228 * 89.97638 * 1 2 3 32 32 H 1.09000 * 109.47226 * 209.97668 * 1 2 3 33 33 H 1.08999 * 109.47089 * 329.97860 * 1 2 3 34 34 H 1.07997 * 126.24285 * 179.97438 * 4 3 2 35 35 H 1.08001 * 120.03383 * 0.04873 * 7 6 5 36 36 H 1.07995 * 119.96851 * 179.97438 * 8 7 6 37 37 H 0.97001 * 119.99967 * 327.24652 * 10 9 8 38 38 H 1.08999 * 109.47424 * 275.42092 * 16 15 13 39 39 H 1.08997 * 109.47300 * 35.42130 * 16 15 13 40 40 H 1.09000 * 109.47537 * 155.42020 * 16 15 13 41 41 H 1.08998 * 109.47427 * 179.97438 * 19 17 15 42 42 H 1.08995 * 109.47142 * 300.00648 * 19 17 15 43 43 H 1.09006 * 109.46731 * 59.99812 * 19 17 15 44 44 H 0.97003 * 119.99984 * 179.97438 * 23 22 20 45 45 H 1.08001 * 119.96668 * 179.70660 * 28 9 8 46 46 H 1.08003 * 120.03413 * 180.29352 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2636 1.0615 0.0000 4 6 3.5494 0.6788 -0.0006 5 6 3.5716 -0.6792 -0.0003 6 6 4.7725 -1.5403 -0.0003 7 6 4.6368 -2.9302 0.0005 8 6 5.7584 -3.7305 0.0011 9 6 7.0247 -3.1554 0.0015 10 7 8.1592 -3.9690 0.0016 11 6 9.2791 -3.5639 -0.6295 12 8 9.2725 -2.5387 -1.2793 13 6 10.5280 -4.3763 -0.5293 14 8 10.5059 -5.4578 0.0210 15 7 11.6797 -3.9085 -1.0499 16 6 11.7331 -2.5578 -1.6145 17 6 12.8784 -4.7508 -1.0511 18 1 12.6469 -5.7128 -0.5940 19 6 13.9876 -4.0607 -0.2546 20 6 13.3388 -4.9671 -2.4698 21 1 12.7934 -4.5214 -3.2884 22 6 14.4564 -5.7340 -2.7224 23 7 15.1203 -6.2772 -1.7255 24 14 15.0275 -6.0015 -4.4808 25 1 14.3748 -7.2152 -5.0340 26 1 14.6600 -4.8225 -5.3054 27 1 16.5017 -6.1795 -4.5007 28 6 7.1632 -1.7716 0.0069 29 6 6.0454 -0.9660 0.0005 30 8 2.2849 -1.0915 -0.0063 31 1 -0.3634 0.0004 -1.0277 32 1 -0.3634 -0.8902 0.5135 33 1 -0.3633 0.8898 0.5142 34 1 4.4098 1.3316 -0.0011 35 1 3.6537 -3.3773 0.0002 36 1 5.6542 -4.8054 0.0021 37 1 8.1415 -4.8259 0.4559 38 1 11.3898 -2.5824 -2.6487 39 1 11.0905 -1.8957 -1.0341 40 1 12.7586 -2.1900 -1.5807 41 1 14.8793 -4.6876 -0.2552 42 1 14.2189 -3.0988 -0.7121 43 1 13.6545 -3.9042 0.7714 44 1 15.9064 -6.8170 -1.9034 45 1 8.1478 -1.3280 0.0120 46 1 6.1535 0.1086 0.0000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190157153.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:11 Heat of formation + Delta-G solvation = -24.861677 kcal Electronic energy + Delta-G solvation = -30271.889839 eV Core-core repulsion = 25935.217219 eV Total energy + Delta-G solvation = -4336.672620 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.31225 -42.23921 -40.55398 -39.26330 -37.59125 -36.21832 -35.88077 -34.73574 -33.40874 -32.13812 -31.51165 -31.14352 -28.19090 -27.73503 -27.32407 -26.07506 -24.55240 -23.99900 -22.68635 -22.47177 -21.77428 -20.78867 -19.20286 -18.74955 -18.54602 -18.24425 -17.82129 -17.60423 -17.22051 -16.94296 -16.82572 -16.21330 -15.92092 -15.34018 -15.13435 -14.93012 -14.83215 -14.50735 -14.45707 -14.37654 -14.18086 -14.02693 -13.77702 -13.64603 -13.53499 -13.30663 -13.07904 -13.00653 -12.75669 -12.73208 -12.53645 -12.38097 -12.29993 -12.20313 -12.08496 -11.74538 -11.63771 -11.24182 -10.60104 -10.44203 -10.25360 -10.06627 -9.55767 -8.80442 -8.18340 -6.34744 -0.56734 0.26855 0.30776 0.87870 1.25575 1.41865 1.43479 1.53341 1.54844 1.65400 2.08304 2.37567 2.56483 2.73218 3.10236 3.10710 3.24417 3.55039 3.81044 3.86597 3.97658 4.19986 4.21720 4.34734 4.42303 4.51662 4.61587 4.65394 4.68616 4.72618 4.79848 4.86676 4.92921 4.97721 4.98769 4.99569 5.10372 5.14090 5.27554 5.34393 5.37062 5.38485 5.41418 5.60584 5.75327 5.87873 5.99073 6.08173 6.44365 6.62045 6.65863 6.72050 6.95287 7.36176 8.86115 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.026655 B = 0.001696 C = 0.001684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.198737 B =16507.121796 C =16619.969551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.190 3.810 3 N -0.514 5.514 4 C -0.031 4.031 5 C -0.012 4.012 6 C -0.041 4.041 7 C -0.078 4.078 8 C -0.133 4.133 9 C 0.143 3.857 10 N -0.638 5.638 11 C 0.519 3.481 12 O -0.501 6.501 13 C 0.487 3.513 14 O -0.563 6.563 15 N -0.561 5.561 16 C 0.089 3.911 17 C 0.258 3.742 18 H 0.025 0.975 19 C -0.135 4.135 20 C -0.544 4.544 21 H 0.058 0.942 22 C 0.021 3.979 23 N -0.912 5.912 24 Si 0.964 3.036 25 H -0.281 1.281 26 H -0.266 1.266 27 H -0.278 1.278 28 C -0.128 4.128 29 C -0.070 4.070 30 O -0.206 6.206 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.205 0.795 35 H 0.148 0.852 36 H 0.156 0.844 37 H 0.430 0.570 38 H 0.053 0.947 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.048 0.952 43 H 0.026 0.974 44 H 0.267 0.733 45 H 0.136 0.864 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.268 11.789 5.120 29.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.015 4.015 3 N -0.243 5.243 4 C -0.170 4.170 5 C -0.065 4.065 6 C -0.042 4.042 7 C -0.097 4.097 8 C -0.153 4.153 9 C 0.049 3.951 10 N -0.284 5.284 11 C 0.302 3.698 12 O -0.376 6.376 13 C 0.269 3.731 14 O -0.444 6.444 15 N -0.291 5.291 16 C -0.053 4.053 17 C 0.157 3.843 18 H 0.043 0.957 19 C -0.193 4.193 20 C -0.582 4.582 21 H 0.076 0.924 22 C -0.179 4.179 23 N -0.550 5.550 24 Si 0.789 3.211 25 H -0.207 1.207 26 H -0.190 1.190 27 H -0.203 1.203 28 C -0.148 4.148 29 C -0.088 4.088 30 O -0.094 6.094 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.131 0.869 34 H 0.221 0.779 35 H 0.165 0.835 36 H 0.174 0.826 37 H 0.270 0.730 38 H 0.072 0.928 39 H 0.111 0.889 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.067 0.933 43 H 0.045 0.955 44 H 0.076 0.924 45 H 0.154 0.846 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -26.271 12.412 4.970 29.477 hybrid contribution 1.152 -1.538 -0.648 2.028 sum -25.119 10.874 4.321 27.710 Atomic orbital electron populations 1.20580 0.78016 1.06654 1.06240 1.27371 0.98009 0.77831 0.98321 1.70381 1.02764 1.31139 1.20038 1.23711 0.95565 0.92783 1.04933 1.21465 0.82231 0.93999 1.08791 1.17696 0.88495 0.92217 1.05801 1.21203 0.99362 0.91771 0.97364 1.21053 0.89447 1.01744 1.03033 1.18116 0.86105 0.90698 1.00139 1.43129 1.09732 1.23151 1.52423 1.20109 0.84706 0.85424 0.79568 1.90721 1.83983 1.24342 1.38512 1.20184 0.85260 0.86577 0.81048 1.90702 1.85710 1.23144 1.44874 1.48225 1.09803 1.16997 1.54098 1.22004 1.03068 0.81214 0.98987 1.18838 0.80094 0.89243 0.96094 0.95728 1.21905 1.00845 1.00249 0.96297 1.21501 1.11869 1.32681 0.92139 0.92360 1.25654 0.96169 0.94765 1.01323 1.69993 1.19212 1.33388 1.32439 0.85472 0.77450 0.78540 0.79668 1.20653 1.19029 1.20344 1.21114 1.00140 0.91768 1.01739 1.21048 0.89193 1.01169 0.97395 1.84426 1.16415 1.38108 1.70445 0.87193 0.87371 0.86945 0.77859 0.83451 0.82642 0.73000 0.92843 0.88943 0.90723 0.90778 0.93317 0.95513 0.92395 0.84592 0.82773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.34 10.51 71.23 0.75 0.41 16 2 C 0.19 3.13 8.33 88.33 0.74 3.87 16 3 N -0.51 -10.58 11.27 -302.79 -3.41 -13.99 16 4 C -0.03 -0.59 11.29 83.78 0.95 0.36 16 5 C -0.01 -0.24 7.07 24.23 0.17 -0.07 16 6 C -0.04 -0.77 5.87 -20.08 -0.12 -0.89 16 7 C -0.08 -1.36 9.72 22.50 0.22 -1.14 16 8 C -0.13 -2.37 9.94 22.36 0.22 -2.15 16 9 C 0.14 3.22 6.29 38.30 0.24 3.46 16 10 N -0.64 -16.24 5.32 -304.73 -1.62 -17.86 16 11 C 0.52 16.73 7.43 87.23 0.65 17.38 16 12 O -0.50 -16.45 11.04 -3.36 -0.04 -16.49 16 13 C 0.49 19.70 7.72 87.23 0.67 20.37 16 14 O -0.56 -25.57 15.83 -3.29 -0.05 -25.62 16 15 N -0.56 -24.01 2.75 -828.53 -2.28 -26.29 16 16 C 0.09 3.17 8.44 127.77 1.08 4.25 16 17 C 0.26 13.08 2.62 44.25 0.12 13.19 16 18 H 0.02 1.45 6.91 -2.39 -0.02 1.43 16 19 C -0.13 -6.27 8.96 71.98 0.64 -5.63 16 20 C -0.54 -29.10 8.37 25.60 0.21 -28.88 16 21 H 0.06 3.09 7.64 -2.91 -0.02 3.07 16 22 C 0.02 1.14 5.30 84.65 0.45 1.59 16 23 N -0.91 -50.83 11.32 21.45 0.24 -50.58 16 24 Si 0.96 42.41 29.54 68.60 2.03 44.43 16 25 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 28 C -0.13 -2.82 8.63 22.36 0.19 -2.63 16 29 C -0.07 -1.28 9.56 22.50 0.22 -1.06 16 30 O -0.21 -3.91 10.59 -8.13 -0.09 -4.00 16 31 H 0.11 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.20 2.78 7.29 -2.91 -0.02 2.76 16 35 H 0.15 2.04 7.94 -2.91 -0.02 2.02 16 36 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 37 H 0.43 9.80 8.29 -92.71 -0.77 9.03 16 38 H 0.05 1.92 8.10 -2.39 -0.02 1.90 16 39 H 0.09 2.89 5.96 -2.39 -0.01 2.88 16 40 H 0.07 2.58 6.44 -2.39 -0.02 2.57 16 41 H 0.07 3.82 6.07 -2.39 -0.01 3.81 16 42 H 0.05 2.08 6.67 -2.39 -0.02 2.06 16 43 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 44 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 45 H 0.14 3.24 6.38 -2.91 -0.02 3.22 16 46 H 0.15 2.05 7.03 -2.91 -0.02 2.03 16 Total: -1.00 -69.62 388.70 2.46 -67.17 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.28 Total: 20.80 kcal Atomic # 6 Polarization: 15.03 SS G_CDS: 7.40 Total: 22.43 kcal Atomic # 7 Polarization: -101.65 SS G_CDS: -7.07 Total: -108.73 kcal Atomic # 8 Polarization: -45.93 SS G_CDS: -0.18 Total: -46.11 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Total: -69.62 2.46 -67.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190157153.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.307 kcal (2) G-P(sol) polarization free energy of solvation -69.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds