Wall clock time and date at job start Tue Mar 31 2020 05:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46754 * 110.99846 * 2 1 4 4 C 1.53422 * 108.60112 * 285.46209 * 3 2 1 5 5 O 1.43129 * 107.89289 * 296.72554 * 4 3 2 6 6 C 1.36256 * 116.67621 * 45.36748 * 5 4 3 7 7 C 1.38779 * 118.67540 * 165.13213 * 6 5 4 8 8 C 1.38115 * 120.30164 * 179.70685 * 7 6 5 9 9 C 1.38844 * 119.95292 * 0.02562 * 8 7 6 10 10 N 1.40128 * 120.01321 * 180.02562 * 9 8 7 11 11 C 1.34770 * 120.00292 * 324.93340 * 10 9 8 12 12 O 1.21602 * 120.00144 * 4.61316 * 11 10 9 13 13 N 1.34774 * 120.00079 * 184.62111 * 11 10 9 14 14 C 1.40189 * 120.00305 * 179.97438 * 13 11 10 15 15 C 1.40400 * 125.97014 * 359.71080 * 14 13 11 16 16 C 1.35242 * 107.86788 * 179.86636 * 15 14 13 17 17 N 1.34971 * 107.85657 * 0.39350 * 16 15 14 18 18 C 1.46494 * 125.97158 * 179.74683 * 17 16 15 19 19 C 1.50703 * 109.46750 * 124.97888 * 18 17 16 20 20 H 1.08001 * 120.00165 * 359.97438 * 19 18 17 21 21 C 1.37878 * 120.00046 * 179.97438 * 19 18 17 22 22 N 1.31515 * 120.00252 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 119.99907 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.46824 * 90.00330 * 23 21 19 25 25 H 1.48503 * 109.46762 * 210.00130 * 23 21 19 26 26 H 1.48499 * 109.47063 * 330.00076 * 23 21 19 27 27 N 1.31208 * 125.97566 * 180.02562 * 14 13 11 28 28 C 1.38621 * 119.96688 * 0.10296 * 9 8 7 29 29 C 1.38980 * 121.34185 * 344.99738 * 6 5 4 30 30 H 1.08994 * 109.46730 * 185.43449 * 1 2 3 31 31 H 1.09000 * 109.47390 * 305.43621 * 1 2 3 32 32 H 1.09003 * 109.47005 * 65.43610 * 1 2 3 33 33 H 1.09003 * 109.61505 * 45.19786 * 3 2 1 34 34 H 1.08995 * 109.61222 * 165.72853 * 3 2 1 35 35 H 1.09006 * 109.77231 * 56.32200 * 4 3 2 36 36 H 1.08997 * 109.77847 * 177.12026 * 4 3 2 37 37 H 1.07996 * 119.84800 * 359.72232 * 7 6 5 38 38 H 1.07997 * 120.02484 * 180.02562 * 8 7 6 39 39 H 0.97000 * 119.99436 * 144.92899 * 10 9 8 40 40 H 0.96998 * 119.99965 * 359.97438 * 13 11 10 41 41 H 1.08005 * 126.06324 * 359.97438 * 15 14 13 42 42 H 1.08002 * 126.06897 * 180.14454 * 16 15 14 43 43 H 1.08997 * 109.47729 * 244.97299 * 18 17 16 44 44 H 1.09002 * 109.47692 * 4.97896 * 18 17 16 45 45 H 0.96992 * 120.00613 * 179.97438 * 22 21 19 46 46 H 1.07999 * 119.90035 * 180.21164 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9949 1.3701 0.0000 4 6 1.8084 1.9659 -1.4014 5 8 2.5929 1.1932 -2.3158 6 6 2.5140 -0.1618 -2.1960 7 6 2.9928 -0.9510 -3.2322 8 6 2.9350 -2.3281 -3.1434 9 6 2.3954 -2.9279 -2.0135 10 7 2.3366 -4.3249 -1.9218 11 6 2.1076 -5.0636 -3.0255 12 8 2.0354 -4.5252 -4.1134 13 7 1.9584 -6.3992 -2.9235 14 6 1.7196 -7.1676 -4.0715 15 6 1.6070 -6.6783 -5.3827 16 6 1.3807 -7.7314 -6.2005 17 7 1.3417 -8.8455 -5.4396 18 6 1.1142 -10.2097 -5.9225 19 6 2.2455 -11.0973 -5.4714 20 1 3.0533 -10.6862 -4.8842 21 6 2.2493 -12.4343 -5.8084 22 7 1.2654 -12.9351 -6.5230 23 14 3.6521 -13.5343 -5.2498 24 1 3.3223 -14.1238 -3.9274 25 1 3.8526 -14.6221 -6.2406 26 1 4.8962 -12.7314 -5.1375 27 7 1.5565 -8.4690 -4.1077 28 6 1.9133 -2.1440 -0.9768 29 6 1.9702 -0.7570 -1.0638 30 1 -0.3632 -1.0230 0.0973 31 1 -0.3634 0.5958 0.8373 32 1 -0.3633 0.4272 -0.9347 33 1 1.4506 1.9710 0.7285 34 1 3.0550 1.3551 0.2531 35 1 0.7571 1.9179 -1.6856 36 1 2.1464 3.0021 -1.4097 37 1 3.4128 -0.4862 -4.1120 38 1 3.3094 -2.9379 -3.9523 39 1 2.4609 -4.7603 -1.0640 40 1 2.0162 -6.8288 -2.0558 41 1 1.6886 -5.6446 -5.6847 42 1 1.2500 -7.6880 -7.2717 43 1 0.1742 -10.5861 -5.5190 44 1 1.0669 -10.2067 -7.0115 45 1 1.2682 -13.8756 -6.7604 46 1 1.4969 -2.6117 -0.0969 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000191489161.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:12 Heat of formation + Delta-G solvation = 73.499284 kcal Electronic energy + Delta-G solvation = -30286.621773 eV Core-core repulsion = 25986.507156 eV Total energy + Delta-G solvation = -4300.114617 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.54449 -40.86390 -39.92099 -37.80178 -36.85404 -34.82287 -34.60276 -33.32910 -31.09398 -30.90349 -29.98089 -29.32593 -28.63199 -26.66570 -25.71580 -24.65193 -23.30907 -22.70520 -22.11314 -20.78291 -19.98341 -19.93469 -18.49330 -18.06446 -17.71860 -16.97627 -16.60202 -16.54826 -15.86196 -15.64108 -15.39757 -15.03615 -14.97332 -14.79963 -14.65556 -14.26872 -14.07510 -13.99201 -13.84727 -13.37472 -12.83517 -12.74441 -12.56844 -12.50584 -12.36209 -12.24731 -11.96914 -11.82764 -11.72370 -11.36902 -11.05830 -10.89780 -10.48989 -10.26801 -10.19806 -9.97990 -9.77811 -9.62389 -9.50558 -8.63918 -8.52682 -8.16666 -7.91939 -7.44266 -6.24640 -4.29743 1.06127 1.08667 2.20610 2.58507 2.91262 3.02096 3.19197 3.23572 3.29400 3.34355 3.49095 3.58187 3.79779 4.07401 4.19665 4.33657 4.43698 4.44918 4.52000 4.82857 4.86670 4.94557 5.03757 5.09167 5.10522 5.19396 5.28577 5.37777 5.46658 5.49426 5.64642 5.78874 5.87523 6.03508 6.14572 6.24911 6.33451 6.47667 6.51559 6.65313 6.68535 6.84971 6.97378 7.07806 7.13981 7.42882 7.68028 7.76569 7.91376 8.04399 8.42962 8.62714 8.79829 9.35925 10.84045 Molecular weight = 357.16amu Principal moments of inertia in cm(-1) A = 0.028815 B = 0.001635 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.490454 B =17119.807213 C =17315.275464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.490 5.490 3 C 0.016 3.984 4 C 0.021 3.979 5 O -0.310 6.310 6 C 0.070 3.930 7 C -0.112 4.112 8 C -0.093 4.093 9 C 0.154 3.846 10 N -0.682 5.682 11 C 0.714 3.286 12 O -0.551 6.551 13 N -0.638 5.638 14 C 0.273 3.727 15 C -0.285 4.285 16 C 0.052 3.948 17 N -0.319 5.319 18 C 0.258 3.742 19 C -0.529 4.529 20 H 0.069 0.931 21 C 0.062 3.938 22 N -0.895 5.895 23 Si 0.908 3.092 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.272 1.272 27 N -0.305 5.305 28 C -0.112 4.112 29 C 0.041 3.959 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.034 0.966 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.113 0.887 37 H 0.135 0.865 38 H 0.153 0.847 39 H 0.408 0.592 40 H 0.409 0.591 41 H 0.162 0.838 42 H 0.168 0.832 43 H 0.045 0.955 44 H 0.057 0.943 45 H 0.267 0.733 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.365 28.959 13.254 31.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.208 5.208 3 C -0.112 4.112 4 C -0.057 4.057 5 O -0.224 6.224 6 C 0.023 3.977 7 C -0.132 4.132 8 C -0.113 4.113 9 C 0.059 3.941 10 N -0.331 5.331 11 C 0.414 3.586 12 O -0.425 6.425 13 N -0.287 5.287 14 C 0.019 3.981 15 C -0.317 4.317 16 C -0.098 4.098 17 N -0.101 5.101 18 C 0.141 3.859 19 C -0.567 4.567 20 H 0.087 0.913 21 C -0.141 4.141 22 N -0.533 5.533 23 Si 0.735 3.265 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.197 1.197 27 N -0.136 5.136 28 C -0.135 4.135 29 C -0.056 4.056 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.117 0.883 34 H 0.113 0.887 35 H 0.083 0.917 36 H 0.131 0.869 37 H 0.153 0.847 38 H 0.170 0.830 39 H 0.244 0.756 40 H 0.244 0.756 41 H 0.179 0.821 42 H 0.185 0.815 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.364 27.913 13.131 30.849 hybrid contribution 0.370 -0.102 0.253 0.460 sum 0.007 27.811 13.385 30.864 Atomic orbital electron populations 1.22598 0.85028 1.03596 1.01033 1.59167 1.08610 1.12583 1.40392 1.22970 1.02958 0.88408 0.96834 1.23533 0.95857 0.96079 0.90188 1.86336 1.65006 1.14551 1.56472 1.19003 1.02448 0.82919 0.93372 1.20375 1.02870 0.92354 0.97603 1.21229 0.97958 0.93624 0.98511 1.17140 0.99596 0.81205 0.96156 1.42426 1.75486 1.04487 1.10675 1.15554 0.78125 0.80710 0.84257 1.90872 1.56065 1.70466 1.25079 1.41301 1.73864 1.04700 1.08879 1.18737 1.02922 0.89946 0.86464 1.21508 1.19120 1.00825 0.90237 1.22566 1.02309 0.86500 0.98431 1.49069 1.50472 1.08449 1.02081 1.19750 0.98608 0.72269 0.95312 1.21259 1.07152 0.93516 1.34769 0.91294 1.24946 0.96609 0.97762 0.94764 1.69914 1.31571 1.14478 1.37374 0.86325 0.81914 0.79773 0.78468 1.20363 1.20985 1.19725 1.77324 1.27049 1.09234 1.00016 1.20400 1.02301 0.91120 0.99662 1.18287 1.05144 0.92712 0.89419 0.90355 0.90514 0.94750 0.88340 0.88721 0.91677 0.86927 0.84694 0.82992 0.75622 0.75646 0.82110 0.81463 0.93714 0.92482 0.92327 0.84958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.20 60.07 0.55 0.69 16 2 N -0.49 -3.85 4.86 -178.67 -0.87 -4.71 16 3 C 0.02 0.09 6.02 -3.69 -0.02 0.07 16 4 C 0.02 0.13 7.06 37.38 0.26 0.39 16 5 O -0.31 -3.11 10.40 -20.56 -0.21 -3.32 16 6 C 0.07 0.76 6.47 -39.11 -0.25 0.51 16 7 C -0.11 -1.24 9.93 -39.43 -0.39 -1.64 16 8 C -0.09 -1.11 8.70 -39.40 -0.34 -1.45 16 9 C 0.15 1.69 6.30 -83.70 -0.53 1.17 16 10 N -0.68 -7.01 5.35 -14.24 -0.08 -7.09 16 11 C 0.71 10.08 8.38 -86.93 -0.73 9.36 16 12 O -0.55 -9.35 10.90 5.28 0.06 -9.30 16 13 N -0.64 -9.48 5.45 -15.51 -0.08 -9.56 16 14 C 0.27 5.36 8.11 -154.37 -1.25 4.10 16 15 C -0.29 -5.56 9.61 -39.84 -0.38 -5.95 16 16 C 0.05 1.02 11.44 -17.24 -0.20 0.83 16 17 N -0.32 -7.33 3.67 -62.56 -0.23 -7.56 16 18 C 0.26 6.51 6.26 -5.20 -0.03 6.48 16 19 C -0.53 -14.61 9.24 -34.44 -0.32 -14.93 16 20 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 21 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 22 N -0.89 -25.20 13.29 55.43 0.74 -24.46 16 23 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 26 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 27 N -0.31 -6.90 12.42 31.44 0.39 -6.51 16 28 C -0.11 -1.08 9.38 -39.12 -0.37 -1.45 16 29 C 0.04 0.41 5.12 -83.61 -0.43 -0.02 16 30 H 0.08 0.49 7.85 -51.93 -0.41 0.08 16 31 H 0.08 0.32 7.98 -51.93 -0.41 -0.10 16 32 H 0.03 0.22 6.90 -51.93 -0.36 -0.14 16 33 H 0.10 0.33 7.90 -51.93 -0.41 -0.08 16 34 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.39 6.80 -51.93 -0.35 0.04 16 36 H 0.11 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.15 2.03 6.22 -52.49 -0.33 1.70 16 39 H 0.41 2.81 8.84 -40.82 -0.36 2.45 16 40 H 0.41 4.78 8.84 -40.82 -0.36 4.42 16 41 H 0.16 3.05 5.91 -52.48 -0.31 2.74 16 42 H 0.17 2.69 8.06 -52.49 -0.42 2.27 16 43 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 45 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 383.88 15.07 5.79 5.79 Total: -1.00 -33.83 383.88 -9.85 -43.68 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -5.80 Total: 7.03 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -4.52 Total: -0.24 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -0.13 Total: -59.89 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: -0.16 Total: -12.62 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.83 -9.85 -43.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000191489161.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.181 kcal (2) G-P(sol) polarization free energy of solvation -33.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds