Wall clock time and date at job start Tue Mar 31 2020 05:00:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35900 * 116.99599 * 2 1 4 4 C 1.38669 * 119.99918 * 0.02562 * 3 2 1 5 5 C 1.38678 * 119.99725 * 180.02562 * 4 3 2 6 6 O 1.35899 * 119.99980 * 179.97438 * 5 4 3 7 7 C 1.42901 * 116.99905 * 359.89437 * 6 5 4 8 8 C 1.38674 * 120.00175 * 359.86648 * 5 4 3 9 9 C 1.38680 * 119.99990 * 0.09066 * 8 5 4 10 10 O 1.35887 * 120.00289 * 179.97438 * 9 8 5 11 11 C 1.42897 * 117.00152 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47394 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99902 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00477 * 179.97438 * 12 11 10 15 15 C 1.39235 * 120.00531 * 175.70717 * 14 12 11 16 16 C 1.39473 * 119.83777 * 215.01615 * 15 14 12 17 17 C 1.36379 * 120.16951 * 179.75817 * 16 15 14 18 18 C 1.40872 * 119.82594 * 0.51925 * 17 16 15 19 19 C 1.41155 * 120.15961 * 179.71968 * 18 17 16 20 20 H 1.08004 * 119.99269 * 214.79810 * 19 18 17 21 21 C 1.39904 * 120.00435 * 34.79820 * 19 18 17 22 22 N 1.30875 * 119.99794 * 355.56210 * 21 19 18 23 23 Si 1.86800 * 119.99830 * 175.55936 * 21 19 18 24 24 H 1.48494 * 109.47184 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46679 * 120.00415 * 23 21 19 26 26 H 1.48502 * 109.46898 * 239.99699 * 23 21 19 27 27 C 1.40862 * 119.67485 * 359.73296 * 18 17 16 28 28 C 1.36379 * 119.82800 * 0.02562 * 27 18 17 29 29 C 1.38672 * 119.99513 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47468 * 299.99650 * 1 2 3 31 31 H 1.08999 * 109.47241 * 60.00101 * 1 2 3 32 32 H 1.09006 * 109.46928 * 180.02562 * 1 2 3 33 33 H 1.08003 * 120.00656 * 359.97438 * 4 3 2 34 34 H 1.08997 * 109.46531 * 179.97438 * 7 6 5 35 35 H 1.08995 * 109.46768 * 299.99810 * 7 6 5 36 36 H 1.09000 * 109.47316 * 59.99826 * 7 6 5 37 37 H 1.07999 * 120.00415 * 180.36618 * 8 5 4 38 38 H 1.09002 * 109.47205 * 299.99390 * 11 10 9 39 39 H 1.08996 * 109.47203 * 59.99767 * 11 10 9 40 40 H 0.96999 * 119.99572 * 355.70994 * 14 12 11 41 41 H 1.08001 * 119.91459 * 0.02562 * 16 15 14 42 42 H 1.07996 * 120.08586 * 180.24917 * 17 16 15 43 43 H 0.97001 * 119.99826 * 180.02562 * 22 21 19 44 44 H 1.08004 * 120.09137 * 179.97438 * 27 18 17 45 45 H 1.07993 * 119.91490 * 179.97438 * 28 27 18 46 46 H 1.07997 * 120.00548 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2906 2.3738 0.0005 5 6 1.9201 3.6095 0.0000 6 8 1.1799 4.7492 0.0000 7 6 -0.2413 4.5998 -0.0018 8 6 3.3049 3.6822 0.0017 9 6 4.0603 2.5191 0.0021 10 8 5.4173 2.5903 0.0032 11 6 6.1319 1.3528 0.0041 12 6 7.6135 1.6281 0.0047 13 8 8.0177 2.7716 0.0040 14 7 8.4894 0.6038 0.0061 15 6 9.8558 0.8559 -0.0836 16 6 10.6797 -0.0260 -0.7825 17 6 12.0182 0.2170 -0.8788 18 6 12.5698 1.3564 -0.2608 19 6 13.9551 1.6116 -0.3510 20 1 14.4756 2.0658 0.4792 21 6 14.6539 1.2761 -1.5157 22 7 14.0427 0.6474 -2.4873 23 14 16.4592 1.7257 -1.6840 24 1 16.9114 2.4265 -0.4553 25 1 17.2614 0.4903 -1.8724 26 1 16.6399 2.6171 -2.8579 27 6 11.7320 2.2397 0.4478 28 6 10.3946 1.9861 0.5312 29 6 3.4307 1.2835 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.2120 2.3173 0.0005 34 1 -0.7100 5.5838 -0.0011 35 1 -0.5478 4.0515 -0.8925 36 1 -0.5500 4.0500 0.8874 37 1 3.7952 4.6444 0.0073 38 1 5.8679 0.7814 0.8941 39 1 5.8693 0.7810 -0.8859 40 1 8.1678 -0.3091 0.0696 41 1 10.2560 -0.9013 -1.2523 42 1 12.6544 -0.4647 -1.4238 43 1 14.5273 0.4145 -3.2947 44 1 12.1478 3.1152 0.9245 45 1 9.7511 2.6622 1.0745 46 1 4.0190 0.3778 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218888044.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:38 Heat of formation + Delta-G solvation = -87.565384 kcal Electronic energy + Delta-G solvation = -29689.578478 eV Core-core repulsion = 25317.894071 eV Total energy + Delta-G solvation = -4371.684408 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.07986 -39.99578 -39.20784 -38.95534 -37.20419 -35.84901 -34.46232 -32.97766 -30.89030 -30.21975 -29.63698 -29.30829 -28.41375 -27.79403 -26.93273 -24.79305 -22.86679 -22.25131 -21.57087 -20.81735 -19.76539 -19.50213 -17.66497 -17.36785 -17.12399 -16.97139 -16.58828 -16.37981 -16.17107 -16.12677 -15.89078 -15.72344 -15.15822 -15.09242 -14.52507 -14.33105 -13.89453 -13.52463 -13.15183 -13.02096 -12.83308 -12.79433 -12.66841 -12.21839 -12.12635 -12.01842 -11.77402 -11.74473 -11.64658 -11.44109 -11.38129 -11.16683 -10.96087 -10.73951 -10.37025 -10.01736 -9.50075 -9.47061 -9.15406 -8.90841 -8.53481 -8.38919 -7.55989 -6.89220 -6.62715 -4.35285 1.07766 1.13798 2.33714 2.49590 2.82559 2.96281 3.05755 3.08165 3.10476 3.15941 3.31508 3.41219 3.90829 3.98472 4.46444 4.59051 4.59528 4.67849 4.68273 4.71187 4.71289 4.77598 4.85738 4.94488 4.95642 4.99430 5.00730 5.04799 5.23256 5.64131 5.74464 5.89262 5.93431 6.12748 6.17536 6.43111 6.70367 6.74804 6.86920 7.00784 7.05607 7.17573 7.18047 7.28770 7.62788 7.70562 7.84412 8.05372 8.20352 8.30394 8.59236 8.67906 8.92113 8.98158 10.28417 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.024249 B = 0.001578 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.409442 B =17737.358512 C =18486.168700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.312 6.312 3 C 0.202 3.798 4 C -0.334 4.334 5 C 0.202 3.798 6 O -0.309 6.309 7 C 0.027 3.973 8 C -0.218 4.218 9 C 0.210 3.790 10 O -0.276 6.276 11 C 0.042 3.958 12 C 0.499 3.501 13 O -0.506 6.506 14 N -0.646 5.646 15 C 0.001 3.999 16 C -0.118 4.118 17 C -0.141 4.141 18 C 0.100 3.900 19 C -0.460 4.460 20 H 0.077 0.923 21 C 0.069 3.931 22 N -0.811 5.811 23 Si 0.916 3.084 24 H -0.262 1.262 25 H -0.275 1.275 26 H -0.274 1.274 27 C -0.205 4.205 28 C -0.085 4.085 29 C -0.279 4.279 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.102 0.898 33 H 0.135 0.865 34 H 0.102 0.898 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.144 0.856 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.397 0.603 41 H 0.092 0.908 42 H 0.133 0.867 43 H 0.277 0.723 44 H 0.097 0.903 45 H 0.108 0.892 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.225 -2.311 3.370 28.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C 0.156 3.844 4 C -0.354 4.354 5 C 0.156 3.844 6 O -0.222 6.222 7 C -0.068 4.068 8 C -0.237 4.237 9 C 0.163 3.837 10 O -0.187 6.187 11 C -0.037 4.037 12 C 0.284 3.716 13 O -0.381 6.381 14 N -0.291 5.291 15 C -0.090 4.090 16 C -0.139 4.139 17 C -0.161 4.161 18 C 0.098 3.902 19 C -0.490 4.490 20 H 0.095 0.905 21 C -0.146 4.146 22 N -0.438 5.438 23 Si 0.741 3.259 24 H -0.186 1.186 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.225 4.225 28 C -0.105 4.105 29 C -0.299 4.299 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.120 0.880 33 H 0.152 0.848 34 H 0.121 0.879 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.162 0.838 38 H 0.111 0.889 39 H 0.113 0.887 40 H 0.231 0.769 41 H 0.110 0.890 42 H 0.150 0.850 43 H 0.088 0.912 44 H 0.115 0.885 45 H 0.126 0.874 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -27.637 -1.381 3.123 27.847 hybrid contribution -0.053 -0.575 -0.304 0.653 sum -27.690 -1.956 2.819 27.902 Atomic orbital electron populations 1.23089 0.78168 1.04132 1.01420 1.86092 1.21592 1.26723 1.88060 1.18282 0.91230 0.83594 0.91280 1.21101 1.00435 0.91782 1.22073 1.18182 0.90168 0.84482 0.91591 1.86103 1.19203 1.28854 1.88042 1.23093 0.78246 1.04056 1.01373 1.19336 0.89946 0.98396 1.16016 1.18193 0.82374 0.92251 0.90882 1.86207 1.14301 1.30862 1.87378 1.22590 0.91073 0.86092 1.03962 1.19898 0.86705 0.86189 0.78813 1.90748 1.79054 1.21033 1.47217 1.42767 1.05573 1.08402 1.72322 1.17220 0.80361 1.02050 1.09408 1.20305 0.94820 0.98879 0.99852 1.21193 0.93115 0.98494 1.03341 1.17753 0.93382 0.89430 0.89678 1.19552 0.93366 1.35577 1.00539 0.90496 1.25890 1.00320 0.93004 0.95378 1.69769 1.37471 1.30922 1.05675 0.86139 0.81681 0.78905 0.79210 1.18556 1.19998 1.19972 1.20814 0.92652 1.00468 1.08527 1.20421 0.95054 0.96335 0.98651 1.20320 0.92584 0.97699 1.19252 0.92562 0.92547 0.87988 0.84760 0.87944 0.92559 0.92574 0.83841 0.88851 0.88719 0.76917 0.88972 0.84969 0.91167 0.88488 0.87398 0.84243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -2.88 10.49 -19.43 -0.20 -3.08 16 3 C 0.20 2.10 6.68 -39.26 -0.26 1.84 16 4 C -0.33 -3.15 8.02 -39.26 -0.31 -3.46 16 5 C 0.20 2.21 6.68 -39.26 -0.26 1.95 16 6 O -0.31 -3.06 10.49 -19.42 -0.20 -3.26 16 7 C 0.03 0.15 9.81 101.05 0.99 1.14 16 8 C -0.22 -2.74 9.92 -39.26 -0.39 -3.13 16 9 C 0.21 2.70 6.68 -39.25 -0.26 2.44 16 10 O -0.28 -4.10 9.67 -39.29 -0.38 -4.48 16 11 C 0.04 0.51 5.22 36.01 0.19 0.70 16 12 C 0.50 8.67 7.74 -10.99 -0.09 8.58 16 13 O -0.51 -11.32 13.92 -14.35 -0.20 -11.52 16 14 N -0.65 -10.91 5.30 -9.74 -0.05 -10.97 16 15 C 0.00 0.03 6.31 -83.57 -0.53 -0.49 16 16 C -0.12 -2.66 9.90 -39.79 -0.39 -3.05 16 17 C -0.14 -3.61 8.62 -39.26 -0.34 -3.95 16 18 C 0.10 2.68 5.55 -106.80 -0.59 2.09 16 19 C -0.46 -12.27 9.02 -37.85 -0.34 -12.61 16 20 H 0.08 1.98 7.85 -52.48 -0.41 1.57 16 21 C 0.07 1.75 5.42 -17.34 -0.09 1.66 16 22 N -0.81 -21.09 10.60 55.55 0.59 -20.50 16 23 Si 0.92 19.04 29.56 -169.99 -5.03 14.01 16 24 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 27 C -0.20 -5.20 9.74 -39.26 -0.38 -5.59 16 28 C -0.08 -2.04 8.61 -39.79 -0.34 -2.38 16 29 C -0.28 -3.11 8.97 -39.26 -0.35 -3.47 16 30 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 31 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 32 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.13 0.89 4.52 -52.48 -0.24 0.65 16 34 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 36 H 0.06 0.24 7.65 -51.93 -0.40 -0.16 16 37 H 0.14 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.09 0.87 7.66 -51.93 -0.40 0.47 16 39 H 0.09 0.93 7.66 -51.93 -0.40 0.53 16 40 H 0.40 4.94 8.82 -40.82 -0.36 4.58 16 41 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 42 H 0.13 3.48 6.13 -52.49 -0.32 3.16 16 43 H 0.28 6.58 8.30 -40.82 -0.34 6.25 16 44 H 0.10 2.35 8.06 -52.48 -0.42 1.92 16 45 H 0.11 2.58 6.22 -52.49 -0.33 2.25 16 46 H 0.14 1.32 6.29 -52.49 -0.33 0.99 16 LS Contribution 388.60 15.07 5.86 5.86 Total: -1.00 -33.68 388.60 -8.01 -41.69 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: -5.62 Total: 8.84 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -2.77 Total: -16.60 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: 0.54 Total: -31.46 kcal Atomic # 8 Polarization: -21.35 SS G_CDS: -0.99 Total: -22.34 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.68 -8.01 -41.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218888044.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.874 kcal (2) G-P(sol) polarization free energy of solvation -33.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds