Wall clock time and date at job start Tue Mar 31 2020 05:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35900 * 116.99599 * 2 1 4 4 C 1.38669 * 119.99918 * 0.02562 * 3 2 1 5 5 C 1.38678 * 119.99725 * 180.02562 * 4 3 2 6 6 O 1.35899 * 119.99980 * 179.97438 * 5 4 3 7 7 C 1.42901 * 116.99905 * 359.89437 * 6 5 4 8 8 C 1.38674 * 120.00175 * 359.86648 * 5 4 3 9 9 C 1.38680 * 119.99990 * 0.09066 * 8 5 4 10 10 O 1.35887 * 120.00289 * 179.97438 * 9 8 5 11 11 C 1.42897 * 117.00152 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47394 * 179.97438 * 11 10 9 13 13 O 1.21279 * 119.99902 * 359.97438 * 12 11 10 14 14 N 1.34775 * 120.00477 * 179.97438 * 12 11 10 15 15 C 1.39235 * 120.00531 * 175.70717 * 14 12 11 16 16 C 1.39473 * 119.83777 * 215.01615 * 15 14 12 17 17 C 1.36379 * 120.16951 * 179.75817 * 16 15 14 18 18 C 1.40872 * 119.82594 * 0.51925 * 17 16 15 19 19 C 1.41155 * 120.15961 * 179.71968 * 18 17 16 20 20 H 1.08004 * 119.99269 * 214.79810 * 19 18 17 21 21 C 1.39904 * 120.00435 * 34.79820 * 19 18 17 22 22 N 1.30875 * 119.99794 * 355.56210 * 21 19 18 23 23 Si 1.86800 * 119.99830 * 175.55936 * 21 19 18 24 24 H 1.48494 * 109.47184 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46679 * 120.00415 * 23 21 19 26 26 H 1.48502 * 109.46898 * 239.99699 * 23 21 19 27 27 C 1.40862 * 119.67485 * 359.73296 * 18 17 16 28 28 C 1.36379 * 119.82800 * 0.02562 * 27 18 17 29 29 C 1.38672 * 119.99513 * 179.97438 * 3 2 1 30 30 H 1.09000 * 109.47468 * 299.99650 * 1 2 3 31 31 H 1.08999 * 109.47241 * 60.00101 * 1 2 3 32 32 H 1.09006 * 109.46928 * 180.02562 * 1 2 3 33 33 H 1.08003 * 120.00656 * 359.97438 * 4 3 2 34 34 H 1.08997 * 109.46531 * 179.97438 * 7 6 5 35 35 H 1.08995 * 109.46768 * 299.99810 * 7 6 5 36 36 H 1.09000 * 109.47316 * 59.99826 * 7 6 5 37 37 H 1.07999 * 120.00415 * 180.36618 * 8 5 4 38 38 H 1.09002 * 109.47205 * 299.99390 * 11 10 9 39 39 H 1.08996 * 109.47203 * 59.99767 * 11 10 9 40 40 H 0.96999 * 119.99572 * 355.70994 * 14 12 11 41 41 H 1.08001 * 119.91459 * 0.02562 * 16 15 14 42 42 H 1.07996 * 120.08586 * 180.24917 * 17 16 15 43 43 H 0.97001 * 119.99826 * 180.02562 * 22 21 19 44 44 H 1.08004 * 120.09137 * 179.97438 * 27 18 17 45 45 H 1.07993 * 119.91490 * 179.97438 * 28 27 18 46 46 H 1.07997 * 120.00548 * 359.97438 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2906 2.3738 0.0005 5 6 1.9201 3.6095 0.0000 6 8 1.1799 4.7492 0.0000 7 6 -0.2413 4.5998 -0.0018 8 6 3.3049 3.6822 0.0017 9 6 4.0603 2.5191 0.0021 10 8 5.4173 2.5903 0.0032 11 6 6.1319 1.3528 0.0041 12 6 7.6135 1.6281 0.0047 13 8 8.0177 2.7716 0.0040 14 7 8.4894 0.6038 0.0061 15 6 9.8558 0.8559 -0.0836 16 6 10.6797 -0.0260 -0.7825 17 6 12.0182 0.2170 -0.8788 18 6 12.5698 1.3564 -0.2608 19 6 13.9551 1.6116 -0.3510 20 1 14.4756 2.0658 0.4792 21 6 14.6539 1.2761 -1.5157 22 7 14.0427 0.6474 -2.4873 23 14 16.4592 1.7257 -1.6840 24 1 16.9114 2.4265 -0.4553 25 1 17.2614 0.4903 -1.8724 26 1 16.6399 2.6171 -2.8579 27 6 11.7320 2.2397 0.4478 28 6 10.3946 1.9861 0.5312 29 6 3.4307 1.2835 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 0.2120 2.3173 0.0005 34 1 -0.7100 5.5838 -0.0011 35 1 -0.5478 4.0515 -0.8925 36 1 -0.5500 4.0500 0.8874 37 1 3.7952 4.6444 0.0073 38 1 5.8679 0.7814 0.8941 39 1 5.8693 0.7810 -0.8859 40 1 8.1678 -0.3091 0.0696 41 1 10.2560 -0.9013 -1.2523 42 1 12.6544 -0.4647 -1.4238 43 1 14.5273 0.4145 -3.2947 44 1 12.1478 3.1152 0.9245 45 1 9.7511 2.6622 1.0745 46 1 4.0190 0.3778 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218888044.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:37 Heat of formation + Delta-G solvation = -108.929544 kcal Electronic energy + Delta-G solvation = -29690.504898 eV Core-core repulsion = 25317.894071 eV Total energy + Delta-G solvation = -4372.610827 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.91049 -41.28557 -40.09790 -39.83989 -38.93003 -36.67989 -36.16493 -34.76650 -31.79394 -31.48288 -31.21627 -30.65422 -29.39264 -28.57785 -27.51104 -26.53545 -23.81573 -23.42090 -22.97543 -22.45769 -21.30509 -20.25634 -19.29379 -18.80127 -18.08363 -18.00304 -17.51887 -17.38752 -17.13163 -16.97444 -16.88227 -16.75240 -16.42153 -15.86908 -15.67083 -15.60495 -15.52869 -14.83380 -14.68615 -14.38242 -14.01835 -13.71473 -13.63809 -13.53941 -13.37261 -13.25260 -12.96282 -12.89912 -12.78083 -12.49708 -12.48407 -12.44466 -12.28948 -12.14541 -11.77060 -11.39481 -11.24194 -11.08013 -10.84638 -10.62681 -9.47508 -9.33723 -9.17987 -8.75873 -8.51380 -6.34136 0.27361 0.33153 0.75058 1.12961 1.38880 1.39854 1.41684 1.54744 1.70878 2.21103 2.24435 2.27120 2.60184 2.77704 2.84168 3.57629 3.68840 3.88527 3.92244 3.96423 4.04490 4.09678 4.11250 4.31671 4.36608 4.37009 4.39976 4.40048 4.46836 4.51911 4.71443 4.75665 4.88255 4.92779 5.11906 5.13635 5.14125 5.14992 5.30972 5.32814 5.41603 5.68977 5.88427 5.99315 6.09964 6.12812 6.20547 6.38248 6.44821 6.64080 6.68072 6.96138 6.98502 7.30419 8.41660 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.024249 B = 0.001578 C = 0.001514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.409442 B =17737.358512 C =18486.168700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.323 6.323 3 C 0.200 3.800 4 C -0.326 4.326 5 C 0.200 3.800 6 O -0.330 6.330 7 C 0.015 3.985 8 C -0.246 4.246 9 C 0.197 3.803 10 O -0.310 6.310 11 C 0.051 3.949 12 C 0.498 3.502 13 O -0.562 6.562 14 N -0.634 5.634 15 C 0.019 3.981 16 C -0.114 4.114 17 C -0.159 4.159 18 C 0.067 3.933 19 C -0.497 4.497 20 H 0.072 0.928 21 C 0.028 3.972 22 N -0.840 5.840 23 Si 0.989 3.011 24 H -0.261 1.261 25 H -0.261 1.261 26 H -0.270 1.270 27 C -0.222 4.222 28 C -0.099 4.099 29 C -0.284 4.284 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.122 0.878 33 H 0.164 0.836 34 H 0.121 0.879 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.424 0.576 41 H 0.131 0.869 42 H 0.121 0.879 43 H 0.285 0.715 44 H 0.094 0.906 45 H 0.105 0.895 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.131 -4.217 3.047 31.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.236 6.236 3 C 0.154 3.846 4 C -0.345 4.345 5 C 0.153 3.847 6 O -0.243 6.243 7 C -0.078 4.078 8 C -0.266 4.266 9 C 0.151 3.849 10 O -0.222 6.222 11 C -0.027 4.027 12 C 0.286 3.714 13 O -0.440 6.440 14 N -0.281 5.281 15 C -0.074 4.074 16 C -0.134 4.134 17 C -0.179 4.179 18 C 0.065 3.935 19 C -0.528 4.528 20 H 0.090 0.910 21 C -0.184 4.184 22 N -0.468 5.468 23 Si 0.810 3.190 24 H -0.185 1.185 25 H -0.186 1.186 26 H -0.195 1.195 27 C -0.242 4.242 28 C -0.119 4.119 29 C -0.303 4.303 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.140 0.860 33 H 0.181 0.819 34 H 0.139 0.861 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.145 0.855 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.262 0.738 41 H 0.148 0.852 42 H 0.139 0.861 43 H 0.096 0.904 44 H 0.112 0.888 45 H 0.123 0.877 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -30.610 -3.339 2.812 30.920 hybrid contribution 0.523 0.014 -0.171 0.550 sum -30.088 -3.325 2.641 30.386 Atomic orbital electron populations 1.23441 0.75991 1.05986 1.02537 1.86084 1.23856 1.25973 1.87699 1.18398 0.91249 0.84379 0.90623 1.21352 1.01889 0.90750 1.20537 1.18231 0.89731 0.85486 0.91249 1.86087 1.21503 1.28861 1.87831 1.23450 0.75855 1.05855 1.02678 1.19444 0.91187 0.98025 1.17916 1.18234 0.81471 0.93053 0.92165 1.86140 1.15626 1.32319 1.88150 1.22638 0.86807 0.85894 1.07355 1.20816 0.88889 0.85103 0.76634 1.90733 1.80409 1.23415 1.49478 1.42621 1.03521 1.10099 1.71857 1.17264 0.82780 1.00400 1.06960 1.20578 0.93755 0.99960 0.99101 1.21190 0.94512 0.98209 1.03951 1.18066 0.94062 0.90458 0.90937 1.19761 0.93985 1.37516 1.01538 0.90994 1.26734 1.04744 0.92467 0.94461 1.69822 1.39270 1.31511 1.06207 0.85055 0.75969 0.78972 0.79032 1.18476 1.18584 1.19488 1.20923 0.93481 1.00652 1.09110 1.20535 0.94500 0.97436 0.99389 1.20472 0.93375 0.97433 1.19012 0.91375 0.91425 0.85954 0.81876 0.86113 0.91212 0.91160 0.85491 0.85030 0.85332 0.73796 0.85156 0.86142 0.90418 0.88759 0.87657 0.82456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.32 -4.91 10.49 -92.43 -0.97 -5.88 16 3 C 0.20 3.65 6.68 22.48 0.15 3.80 16 4 C -0.33 -5.35 8.02 22.48 0.18 -5.17 16 5 C 0.20 4.20 6.68 22.48 0.15 4.35 16 6 O -0.33 -6.22 10.49 -92.42 -0.97 -7.19 16 7 C 0.02 0.13 9.81 113.37 1.11 1.24 16 8 C -0.25 -6.34 9.92 22.48 0.22 -6.12 16 9 C 0.20 4.96 6.68 22.48 0.15 5.11 16 10 O -0.31 -9.08 9.67 -73.24 -0.71 -9.78 16 11 C 0.05 1.13 5.22 71.24 0.37 1.50 16 12 C 0.50 16.68 7.74 87.66 0.68 17.36 16 13 O -0.56 -25.55 13.92 16.01 0.22 -25.33 16 14 N -0.63 -20.08 5.30 -303.12 -1.61 -21.69 16 15 C 0.02 0.83 6.31 38.57 0.24 1.08 16 16 C -0.11 -5.02 9.90 22.13 0.22 -4.80 16 17 C -0.16 -8.25 8.62 22.48 0.19 -8.06 16 18 C 0.07 3.75 5.55 -21.28 -0.12 3.63 16 19 C -0.50 -27.69 9.02 23.39 0.21 -27.48 16 20 H 0.07 3.89 7.85 -2.91 -0.02 3.87 16 21 C 0.03 1.44 5.42 85.24 0.46 1.90 16 22 N -0.84 -44.55 10.60 21.82 0.23 -44.32 16 23 Si 0.99 39.58 29.56 68.60 2.03 41.61 16 24 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 25 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 26 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 27 C -0.22 -11.81 9.74 22.48 0.22 -11.59 16 28 C -0.10 -4.86 8.61 22.14 0.19 -4.67 16 29 C -0.28 -5.70 8.97 22.48 0.20 -5.50 16 30 H 0.07 0.29 7.66 -2.39 -0.02 0.27 16 31 H 0.07 0.29 7.66 -2.39 -0.02 0.28 16 32 H 0.12 0.28 8.14 -2.38 -0.02 0.26 16 33 H 0.16 1.56 4.52 -2.91 -0.01 1.55 16 34 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.07 0.39 7.66 -2.39 -0.02 0.37 16 36 H 0.07 0.39 7.65 -2.39 -0.02 0.37 16 37 H 0.13 3.51 8.06 -2.91 -0.02 3.49 16 38 H 0.13 1.95 7.66 -2.39 -0.02 1.93 16 39 H 0.13 2.03 7.66 -2.39 -0.02 2.01 16 40 H 0.42 8.98 8.82 -92.71 -0.82 8.16 16 41 H 0.13 4.67 8.06 -2.91 -0.02 4.64 16 42 H 0.12 6.51 6.13 -2.91 -0.02 6.49 16 43 H 0.29 13.67 8.30 -92.71 -0.77 12.90 16 44 H 0.09 4.87 8.06 -2.91 -0.02 4.85 16 45 H 0.11 5.21 6.22 -2.91 -0.02 5.19 16 46 H 0.16 2.42 6.29 -2.91 -0.02 2.41 16 Total: -1.00 -78.16 388.60 4.40 -73.76 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: 0.23 Total: 31.03 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: 5.95 Total: -32.21 kcal Atomic # 7 Polarization: -64.63 SS G_CDS: -1.38 Total: -66.01 kcal Atomic # 8 Polarization: -45.76 SS G_CDS: -2.42 Total: -48.18 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.61 kcal Total: -78.16 4.40 -73.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218888044.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.168 kcal (2) G-P(sol) polarization free energy of solvation -78.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds