Wall clock time and date at job start Tue Mar 31 2020 05:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.47055 * 2 1 4 4 N 1.46897 * 109.47423 * 120.00699 * 2 1 3 5 5 C 1.38586 * 110.99870 * 26.67163 * 4 2 1 6 6 C 1.40273 * 117.46732 * 285.34659 * 5 4 2 7 7 C 1.36127 * 120.67023 * 179.19501 * 6 5 4 8 8 C 1.40420 * 119.76937 * 0.55321 * 7 6 5 9 9 C 1.46582 * 120.24608 * 180.02562 * 8 7 6 10 10 N 1.30811 * 120.00304 * 359.73207 * 9 8 7 11 11 N 1.40099 * 119.99919 * 179.97438 * 10 9 8 12 12 C 1.34780 * 119.99478 * 180.02562 * 11 10 9 13 13 O 1.22002 * 120.00260 * 359.97438 * 12 11 10 14 14 C 1.40473 * 119.99571 * 179.97438 * 12 11 10 15 15 H 1.08004 * 120.00772 * 359.97438 * 14 12 11 16 16 C 1.40190 * 120.00164 * 180.02562 * 14 12 11 17 17 N 1.30616 * 119.99695 * 359.97438 * 16 14 12 18 18 Si 1.86795 * 120.00271 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47050 * 269.99904 * 18 16 14 20 20 H 1.48502 * 109.47042 * 29.99625 * 18 16 14 21 21 H 1.48497 * 109.47136 * 149.99575 * 18 16 14 22 22 C 1.40152 * 119.50394 * 359.76609 * 8 7 6 23 23 C 1.36975 * 120.34939 * 359.95888 * 22 8 7 24 24 C 1.50842 * 117.98589 * 179.73712 * 23 22 8 25 25 H 1.09005 * 109.44229 * 284.83346 * 24 23 22 26 26 C 1.53000 * 109.44400 * 44.73852 * 24 23 22 27 27 C 1.53043 * 109.62265 * 164.78661 * 24 23 22 28 28 C 1.46396 * 111.00144 * 153.52245 * 4 2 1 29 29 C 1.52996 * 109.60189 * 168.36331 * 28 4 2 30 30 C 1.52995 * 109.60087 * 47.88133 * 28 4 2 31 31 H 1.08998 * 109.46354 * 299.99194 * 1 2 3 32 32 H 1.09002 * 109.46998 * 59.99280 * 1 2 3 33 33 H 1.08996 * 109.46978 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.47024 * 240.00503 * 2 1 3 35 35 H 1.08997 * 109.47145 * 188.40694 * 3 2 1 36 36 H 1.09000 * 109.47603 * 308.40748 * 3 2 1 37 37 H 1.09007 * 109.46953 * 68.41156 * 3 2 1 38 38 H 1.07994 * 119.66780 * 359.50072 * 6 5 4 39 39 H 1.08009 * 120.11186 * 180.30454 * 7 6 5 40 40 H 1.08000 * 119.99770 * 179.72951 * 9 8 7 41 41 H 0.96995 * 120.00392 * 359.97438 * 11 10 9 42 42 H 0.96998 * 119.99989 * 180.02562 * 17 16 14 43 43 H 1.08003 * 119.82872 * 179.97438 * 22 8 7 44 44 H 1.08997 * 109.46841 * 60.00745 * 26 24 23 45 45 H 1.09006 * 109.46902 * 180.02562 * 26 24 23 46 46 H 1.08998 * 109.47493 * 300.00112 * 26 24 23 47 47 H 1.08997 * 109.77710 * 166.67802 * 27 24 23 48 48 H 1.09000 * 109.77805 * 287.43304 * 27 24 23 49 49 H 1.09002 * 109.47262 * 179.18316 * 29 28 4 50 50 H 1.09001 * 109.47582 * 299.18882 * 29 28 4 51 51 H 1.09000 * 109.46918 * 59.18739 * 29 28 4 52 52 H 1.09001 * 109.47358 * 293.64430 * 30 28 4 53 53 H 1.09000 * 109.47553 * 53.64706 * 30 28 4 54 54 H 1.09004 * 109.46911 * 173.64931 * 30 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0198 -0.6926 1.1993 5 6 1.0954 -1.6224 1.6481 6 6 -0.0461 -1.1361 2.3024 7 6 -1.0040 -1.9908 2.7553 8 6 -0.8445 -3.3744 2.5771 9 6 -1.8696 -4.3042 3.0601 10 7 -2.9355 -3.8461 3.6645 11 7 -3.9155 -4.7348 4.1256 12 6 -5.0140 -4.2627 4.7478 13 8 -5.1546 -3.0617 4.9099 14 6 -5.9969 -5.1537 5.2098 15 1 -5.8726 -6.2169 5.0660 16 6 -7.1397 -4.6628 5.8565 17 7 -7.2903 -3.3770 6.0300 18 14 -8.4464 -5.8476 6.4714 19 1 -9.4521 -6.0737 5.4024 20 1 -7.8113 -7.1398 6.8348 21 1 -9.1145 -5.2712 7.6658 22 6 0.2997 -3.8595 1.9290 23 6 1.2560 -2.9922 1.4713 24 6 2.4686 -3.5725 0.7871 25 1 3.1324 -4.0086 1.5336 26 6 2.0274 -4.6574 -0.1975 27 6 3.2092 -2.4678 0.0298 28 6 3.3481 -1.2637 0.9697 29 6 3.9484 -1.7185 2.3015 30 6 4.2547 -0.2123 0.3267 31 1 -0.3632 0.5137 0.8901 32 1 -0.3633 0.5140 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 3.1196 1.4462 -0.1502 36 1 1.5593 1.9980 -0.8053 37 1 1.8046 1.9111 0.9556 38 1 -0.1687 -0.0725 2.4440 39 1 -1.8817 -1.6061 3.2536 40 1 -1.7449 -5.3673 2.9170 41 1 -3.8039 -5.6896 3.9965 42 1 -8.0809 -3.0373 6.4778 43 1 0.4279 -4.9228 1.7895 44 1 1.3625 -4.2223 -0.9435 45 1 2.9035 -5.0773 -0.6919 46 1 1.5023 -5.4457 0.3418 47 1 4.1972 -2.8213 -0.2650 48 1 2.6405 -2.1822 -0.8551 49 1 4.9311 -2.1565 2.1264 50 1 4.0461 -0.8614 2.9677 51 1 3.2957 -2.4619 2.7592 52 1 3.8885 0.0207 -0.6732 53 1 4.2506 0.6921 0.9350 54 1 5.2709 -0.6008 0.2600 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223542380.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:20 Heat of formation + Delta-G solvation = 22.236779 kcal Electronic energy + Delta-G solvation = -32526.411780 eV Core-core repulsion = 28463.447691 eV Total energy + Delta-G solvation = -4062.964088 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 357.216 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.51712 -39.68524 -38.97741 -37.08020 -36.80388 -34.76916 -34.12198 -33.41560 -31.94761 -31.18463 -29.38794 -28.77258 -28.01929 -27.63625 -27.26640 -24.59646 -23.81362 -22.38789 -22.08758 -21.83452 -21.20577 -19.60186 -18.90371 -17.93681 -17.71050 -17.52904 -17.08390 -16.72492 -15.92752 -15.88435 -15.68370 -15.54825 -15.19171 -15.07785 -14.71557 -14.58305 -14.36292 -13.95731 -13.77565 -13.74123 -13.64173 -13.30330 -13.13009 -13.05960 -12.91934 -12.86935 -12.75243 -12.74366 -12.73295 -12.51823 -12.41576 -12.28639 -12.25732 -12.04858 -12.03691 -11.70242 -11.41323 -11.34797 -11.10732 -11.01418 -10.95358 -10.29584 -10.00470 -9.67913 -9.47301 -8.44255 -8.42104 -7.11752 -0.08442 0.56917 1.36216 1.37642 1.54543 1.56897 2.06269 2.34708 2.40105 2.70866 2.96857 3.63288 3.67352 3.71361 3.78320 3.87248 3.87931 4.07018 4.09418 4.19529 4.32693 4.34343 4.39640 4.41817 4.50243 4.59267 4.62081 4.71210 4.75841 4.79520 4.81750 4.86520 4.89245 4.91980 4.97097 5.00518 5.05284 5.10129 5.11691 5.16039 5.18186 5.21359 5.24061 5.30246 5.36490 5.38640 5.46406 5.50362 5.54034 5.62086 5.72400 5.79865 5.87504 6.01178 6.23370 6.55654 6.65536 6.94551 7.44331 8.39846 8.57481 Molecular weight = 357.22amu Principal moments of inertia in cm(-1) A = 0.019916 B = 0.002006 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.571207 B =13953.714353 C =14758.323719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.087 3.913 3 C -0.155 4.155 4 N -0.493 5.493 5 C 0.135 3.865 6 C -0.125 4.125 7 C -0.097 4.097 8 C -0.071 4.071 9 C 0.068 3.932 10 N -0.265 5.265 11 N -0.596 5.596 12 C 0.543 3.457 13 O -0.618 6.618 14 C -0.561 4.561 15 H 0.096 0.904 16 C 0.028 3.972 17 N -0.801 5.801 18 Si 1.012 2.988 19 H -0.257 1.257 20 H -0.244 1.244 21 H -0.269 1.269 22 C -0.072 4.072 23 C -0.121 4.121 24 C -0.045 4.045 25 H 0.092 0.908 26 C -0.142 4.142 27 C -0.137 4.137 28 C 0.106 3.894 29 C -0.139 4.139 30 C -0.143 4.143 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.043 0.957 34 H 0.066 0.934 35 H 0.086 0.914 36 H 0.064 0.936 37 H 0.050 0.950 38 H 0.126 0.874 39 H 0.097 0.903 40 H 0.137 0.863 41 H 0.383 0.617 42 H 0.282 0.718 43 H 0.149 0.851 44 H 0.046 0.954 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.096 0.904 48 H 0.064 0.936 49 H 0.081 0.919 50 H 0.052 0.948 51 H 0.047 0.953 52 H 0.069 0.931 53 H 0.066 0.934 54 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.754 0.177 -16.102 31.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.018 4.018 3 C -0.212 4.212 4 N -0.211 5.211 5 C 0.036 3.964 6 C -0.144 4.144 7 C -0.118 4.118 8 C -0.074 4.074 9 C -0.141 4.141 10 N -0.072 5.072 11 N -0.341 5.341 12 C 0.353 3.647 13 O -0.504 6.504 14 C -0.597 4.597 15 H 0.114 0.886 16 C -0.191 4.191 17 N -0.429 5.429 18 Si 0.829 3.171 19 H -0.182 1.182 20 H -0.167 1.167 21 H -0.194 1.194 22 C -0.093 4.093 23 C -0.124 4.124 24 C -0.063 4.063 25 H 0.110 0.890 26 C -0.199 4.199 27 C -0.175 4.175 28 C 0.018 3.982 29 C -0.197 4.197 30 C -0.200 4.200 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.144 0.856 39 H 0.115 0.885 40 H 0.154 0.846 41 H 0.221 0.779 42 H 0.092 0.908 43 H 0.166 0.834 44 H 0.066 0.934 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.115 0.885 48 H 0.083 0.917 49 H 0.099 0.901 50 H 0.071 0.929 51 H 0.066 0.934 52 H 0.088 0.912 53 H 0.085 0.915 54 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 25.994 2.286 -15.197 30.197 hybrid contribution -1.000 -1.805 -0.069 2.065 sum 24.993 0.480 -15.266 29.291 Atomic orbital electron populations 1.22402 0.95543 1.01555 1.02722 1.21704 0.94241 0.95941 0.89892 1.22302 1.03195 0.93704 1.01990 1.58557 1.01986 1.27971 1.32551 1.18549 0.91738 0.89951 0.96120 1.20862 0.94287 0.99688 0.99578 1.20929 0.98706 0.93419 0.98785 1.18506 0.94568 0.91881 1.02403 1.24608 0.92271 0.98883 0.98360 1.74991 0.99407 1.24752 1.08063 1.47316 1.19572 1.06422 1.60829 1.17158 0.80158 0.89120 0.78242 1.90662 1.78833 1.18641 1.62229 1.20268 1.04523 0.95365 1.39545 0.88622 1.27200 1.01067 0.97470 0.93330 1.70196 1.26541 1.16439 1.29682 0.84826 0.76155 0.77901 0.78219 1.18172 1.16744 1.19372 1.21019 0.91383 1.00766 0.96176 1.19813 0.98347 0.92391 1.01864 1.20147 0.92860 0.95989 0.97294 0.88972 1.21868 1.01849 0.97691 0.98539 1.22300 1.02003 0.95315 0.97893 1.21219 0.87214 0.93936 0.95854 1.21898 1.00917 1.01136 0.95726 1.22206 0.99030 0.98194 1.00560 0.91919 0.91113 0.93800 0.91600 0.89553 0.91663 0.93034 0.85638 0.88483 0.84563 0.77898 0.90808 0.83379 0.93437 0.90689 0.91894 0.88549 0.91707 0.90062 0.92901 0.93428 0.91246 0.91485 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 7.59 71.98 0.55 -2.84 16 2 C 0.09 1.44 2.29 44.92 0.10 1.55 16 3 C -0.15 -2.09 8.70 71.98 0.63 -1.47 16 4 N -0.49 -9.25 4.02 -625.03 -2.51 -11.77 16 5 C 0.14 3.18 3.42 38.76 0.13 3.32 16 6 C -0.12 -3.61 6.91 22.27 0.15 -3.46 16 7 C -0.10 -3.43 9.53 22.31 0.21 -3.22 16 8 C -0.07 -2.28 5.88 -20.11 -0.12 -2.40 16 9 C 0.07 2.48 10.76 87.02 0.94 3.42 16 10 N -0.26 -12.92 10.20 -52.32 -0.53 -13.46 16 11 N -0.60 -30.63 6.26 -180.63 -1.13 -31.76 16 12 C 0.54 33.98 7.65 84.79 0.65 34.63 16 13 O -0.62 -44.98 15.19 -5.32 -0.08 -45.06 16 14 C -0.56 -32.35 9.25 23.29 0.22 -32.14 16 15 H 0.10 4.81 7.85 -2.91 -0.02 4.78 16 16 C 0.03 1.56 5.50 85.35 0.47 2.03 16 17 N -0.80 -49.56 11.70 21.86 0.26 -49.30 16 18 Si 1.01 40.18 29.56 68.60 2.03 42.21 16 19 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 20 H -0.24 -8.91 7.11 99.48 0.71 -8.20 16 21 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 22 C -0.07 -1.74 8.77 22.44 0.20 -1.54 16 23 C -0.12 -2.59 4.54 -19.92 -0.09 -2.68 16 24 C -0.04 -0.65 2.21 -11.48 -0.03 -0.67 16 25 H 0.09 1.23 7.03 -2.38 -0.02 1.21 16 26 C -0.14 -1.76 8.74 71.98 0.63 -1.13 16 27 C -0.14 -1.63 4.26 30.74 0.13 -1.50 16 28 C 0.11 1.46 0.69 3.75 0.00 1.46 16 29 C -0.14 -2.05 7.93 71.98 0.57 -1.48 16 30 C -0.14 -1.37 6.70 71.98 0.48 -0.89 16 31 H 0.06 1.44 5.68 -2.39 -0.01 1.42 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.04 1.07 6.42 -2.39 -0.02 1.06 16 34 H 0.07 0.98 5.51 -2.39 -0.01 0.97 16 35 H 0.09 0.91 4.29 -2.39 -0.01 0.90 16 36 H 0.06 0.77 8.13 -2.39 -0.02 0.75 16 37 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 38 H 0.13 3.53 6.44 -2.91 -0.02 3.52 16 39 H 0.10 4.14 7.56 -2.91 -0.02 4.12 16 40 H 0.14 3.89 8.03 -2.91 -0.02 3.87 16 41 H 0.38 16.27 8.61 -213.33 -1.84 14.43 16 42 H 0.28 15.54 8.29 -92.71 -0.77 14.77 16 43 H 0.15 2.72 6.48 -2.91 -0.02 2.71 16 44 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 46 H 0.06 0.77 6.52 -2.39 -0.02 0.75 16 47 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.06 0.85 6.31 -2.39 -0.02 0.83 16 49 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 50 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 51 H 0.05 0.86 5.52 -2.39 -0.01 0.85 16 52 H 0.07 0.59 5.80 -2.39 -0.01 0.58 16 53 H 0.07 0.73 6.93 -2.39 -0.02 0.71 16 54 H 0.08 0.51 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -83.31 406.09 2.94 -80.37 By element: Atomic # 1 Polarization: 38.68 SS G_CDS: -0.91 Total: 37.77 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: 5.82 Total: -9.01 kcal Atomic # 7 Polarization: -102.36 SS G_CDS: -3.92 Total: -106.29 kcal Atomic # 8 Polarization: -44.98 SS G_CDS: -0.08 Total: -45.06 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Total: -83.31 2.94 -80.37 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223542380.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.608 kcal (2) G-P(sol) polarization free energy of solvation -83.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds