Wall clock time and date at job start Tue Mar 31 2020 05:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46896 * 109.47415 * 2 1 4 4 C 1.38587 * 111.00042 * 69.60328 * 3 2 1 5 5 C 1.40274 * 117.46621 * 285.34265 * 4 3 2 6 6 C 1.36122 * 120.67127 * 179.19135 * 5 4 3 7 7 C 1.50705 * 120.11704 * 180.30208 * 6 5 4 8 8 C 1.40421 * 119.76829 * 0.56257 * 6 5 4 9 9 C 1.46583 * 120.25010 * 180.02562 * 8 6 5 10 10 N 1.30812 * 119.99627 * 354.31010 * 9 8 6 11 11 N 1.40108 * 119.99849 * 179.97438 * 10 9 8 12 12 C 1.34769 * 119.99760 * 180.02562 * 11 10 9 13 13 O 1.22007 * 120.00617 * 359.97438 * 12 11 10 14 14 C 1.40482 * 119.99666 * 180.02562 * 12 11 10 15 15 H 1.08000 * 119.99982 * 359.97438 * 14 12 11 16 16 C 1.40184 * 119.99596 * 179.97438 * 14 12 11 17 17 N 1.30616 * 120.00481 * 359.97438 * 16 14 12 18 18 Si 1.86805 * 119.99531 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46773 * 269.99604 * 18 16 14 20 20 H 1.48498 * 109.47114 * 29.99742 * 18 16 14 21 21 H 1.48498 * 109.46887 * 149.99804 * 18 16 14 22 22 C 1.40162 * 119.50473 * 359.75786 * 8 6 5 23 23 C 1.36971 * 120.34486 * 359.96111 * 22 8 6 24 24 C 1.50838 * 117.98158 * 179.73156 * 23 22 8 25 25 H 1.08999 * 109.44955 * 284.83955 * 24 23 22 26 26 C 1.53002 * 109.44508 * 44.74655 * 24 23 22 27 27 C 1.53053 * 109.62067 * 164.78957 * 24 23 22 28 28 C 1.46390 * 111.00042 * 196.45686 * 3 2 1 29 29 C 1.53000 * 109.60535 * 168.36592 * 28 3 2 30 30 C 1.53004 * 109.74276 * 47.95530 * 28 3 2 31 31 H 1.09011 * 109.46920 * 300.00215 * 1 2 3 32 32 H 1.08998 * 109.47502 * 59.99620 * 1 2 3 33 33 H 1.08998 * 109.47757 * 180.02562 * 1 2 3 34 34 H 1.08998 * 109.46626 * 239.99704 * 2 1 3 35 35 H 1.08995 * 109.47001 * 120.00365 * 2 1 3 36 36 H 1.07997 * 119.66339 * 359.50277 * 5 4 3 37 37 H 1.09003 * 109.47115 * 263.32845 * 7 6 5 38 38 H 1.09001 * 109.46854 * 23.32434 * 7 6 5 39 39 H 1.08994 * 109.47151 * 143.32338 * 7 6 5 40 40 H 1.08000 * 120.00109 * 174.30910 * 9 8 6 41 41 H 0.97004 * 119.99858 * 359.97438 * 11 10 9 42 42 H 0.96994 * 119.99722 * 179.97438 * 17 16 14 43 43 H 1.07999 * 119.82519 * 179.97438 * 22 8 6 44 44 H 1.09006 * 109.46886 * 59.99894 * 26 24 23 45 45 H 1.09005 * 109.47276 * 179.97438 * 26 24 23 46 46 H 1.08999 * 109.47093 * 299.99566 * 26 24 23 47 47 H 1.09000 * 109.77681 * 166.68861 * 27 24 23 48 48 H 1.09003 * 109.77382 * 287.48909 * 27 24 23 49 49 H 1.09004 * 109.47372 * 179.17935 * 29 28 3 50 50 H 1.08998 * 109.47248 * 299.17812 * 29 28 3 51 51 H 1.08998 * 109.47170 * 59.18450 * 29 28 3 52 52 H 1.09007 * 109.46985 * 292.65404 * 30 28 3 53 53 H 1.09001 * 109.46709 * 52.64430 * 30 28 3 54 54 H 1.09002 * 109.47366 * 172.64773 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7602 2.0035 1.2127 5 6 0.4371 2.3912 1.4711 6 6 0.1060 2.9891 2.6484 7 6 -1.3207 3.3944 2.9157 8 6 1.0995 3.2319 3.6105 9 6 0.7547 3.8746 4.8821 10 7 -0.4575 4.3247 5.0798 11 7 -0.7873 4.9385 6.2953 12 6 -2.0363 5.4017 6.4992 13 8 -2.8798 5.2870 5.6252 14 6 -2.3668 6.0176 7.7178 15 1 -1.6200 6.1195 8.4913 16 6 -3.6659 6.4999 7.9296 17 7 -4.5689 6.3771 6.9939 18 14 -4.1055 7.3183 9.5503 19 1 -4.5976 6.2929 10.5051 20 1 -2.9016 7.9812 10.1127 21 1 -5.1669 8.3314 9.3213 22 6 2.4224 2.8500 3.3484 23 6 2.7457 2.2437 2.1635 24 6 4.1866 1.8607 1.9346 25 1 4.7681 2.7543 1.7079 26 6 4.7439 1.1976 3.1959 27 6 4.2781 0.8819 0.7615 28 6 3.4303 1.4426 -0.3872 29 6 3.8293 2.8945 -0.6584 30 6 3.6550 0.6045 -1.6474 31 1 -0.3633 0.5139 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3634 -1.0276 0.0005 34 1 1.8932 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8899 36 1 -0.3276 2.2089 0.7306 37 1 -1.4501 4.4493 2.6737 38 1 -1.9903 2.7953 2.2986 39 1 -1.5535 3.2317 3.9680 40 1 1.5015 3.9765 5.6556 41 1 -0.1167 5.0293 6.9904 42 1 -5.4678 6.7106 7.1408 43 1 3.1907 3.0347 4.0846 44 1 4.1621 0.3045 3.4242 45 1 5.7851 0.9201 3.0308 46 1 4.6815 1.8952 4.0310 47 1 5.3156 0.7858 0.4414 48 1 3.8927 -0.0921 1.0630 49 1 4.8835 2.9366 -0.9323 50 1 3.2257 3.2908 -1.4749 51 1 3.6631 3.4907 0.2389 52 1 3.5027 -0.4495 -1.4148 53 1 2.9490 0.9120 -2.4188 54 1 4.6733 0.7540 -2.0064 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223572647.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:02 Heat of formation + Delta-G solvation = 19.432142 kcal Electronic energy + Delta-G solvation = -32655.511861 eV Core-core repulsion = 28592.426154 eV Total energy + Delta-G solvation = -4063.085707 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 357.216 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.29758 -39.75830 -39.09016 -36.81825 -36.61081 -34.75871 -34.29166 -32.81039 -32.35394 -31.35043 -29.45522 -28.57836 -28.18457 -27.58799 -27.46937 -24.30792 -23.47084 -22.73778 -22.31587 -22.02885 -21.23746 -19.58623 -18.58506 -18.03701 -17.61411 -17.40583 -16.83760 -16.74590 -15.98418 -15.79751 -15.66568 -15.31429 -15.14059 -14.95800 -14.71257 -14.65330 -14.48436 -14.13335 -13.88625 -13.67064 -13.31484 -13.25130 -13.19106 -13.06813 -13.02826 -12.93682 -12.77350 -12.72222 -12.70443 -12.63048 -12.58650 -12.54972 -12.20927 -12.04400 -12.01699 -11.82593 -11.48169 -11.35975 -11.21049 -11.00051 -10.54641 -10.31710 -9.94904 -9.48153 -9.44143 -8.44247 -8.41865 -7.08476 -0.06469 0.54316 1.36638 1.38135 1.55105 1.56630 2.08577 2.36874 2.42735 2.72660 2.91337 3.67007 3.68060 3.71568 3.80266 3.86491 3.92479 4.10807 4.17328 4.20554 4.28012 4.37599 4.42627 4.51798 4.54025 4.61052 4.62626 4.68457 4.75753 4.78326 4.82585 4.85660 4.89803 4.94555 4.95858 5.02204 5.07284 5.09026 5.10229 5.16487 5.18046 5.19105 5.22123 5.32725 5.35222 5.39068 5.40864 5.47174 5.60384 5.64143 5.80722 5.85091 5.88650 6.06238 6.20720 6.54786 6.68389 6.97682 7.47201 8.42052 8.61140 Molecular weight = 357.22amu Principal moments of inertia in cm(-1) A = 0.020989 B = 0.002102 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.701742 B =13316.188210 C =14122.218769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.054 3.946 3 N -0.497 5.497 4 C 0.132 3.868 5 C -0.137 4.137 6 C -0.054 4.054 7 C -0.100 4.100 8 C -0.077 4.077 9 C 0.059 3.941 10 N -0.245 5.245 11 N -0.601 5.601 12 C 0.545 3.455 13 O -0.612 6.612 14 C -0.563 4.563 15 H 0.093 0.907 16 C 0.030 3.970 17 N -0.800 5.800 18 Si 1.008 2.992 19 H -0.258 1.258 20 H -0.246 1.246 21 H -0.270 1.270 22 C -0.069 4.069 23 C -0.125 4.125 24 C -0.045 4.045 25 H 0.091 0.909 26 C -0.142 4.142 27 C -0.135 4.135 28 C 0.105 3.895 29 C -0.140 4.140 30 C -0.139 4.139 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.036 0.964 36 H 0.131 0.869 37 H 0.044 0.956 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.136 0.864 41 H 0.380 0.620 42 H 0.281 0.719 43 H 0.148 0.852 44 H 0.047 0.953 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.095 0.905 48 H 0.064 0.936 49 H 0.081 0.919 50 H 0.051 0.949 51 H 0.046 0.954 52 H 0.067 0.933 53 H 0.060 0.940 54 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.879 -13.681 -13.285 29.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.070 4.070 3 N -0.215 5.215 4 C 0.034 3.966 5 C -0.156 4.156 6 C -0.057 4.057 7 C -0.156 4.156 8 C -0.079 4.079 9 C -0.149 4.149 10 N -0.052 5.052 11 N -0.346 5.346 12 C 0.355 3.645 13 O -0.497 6.497 14 C -0.599 4.599 15 H 0.111 0.889 16 C -0.189 4.189 17 N -0.427 5.427 18 Si 0.826 3.174 19 H -0.183 1.183 20 H -0.169 1.169 21 H -0.194 1.194 22 C -0.090 4.090 23 C -0.128 4.128 24 C -0.063 4.063 25 H 0.109 0.891 26 C -0.199 4.199 27 C -0.174 4.174 28 C 0.016 3.984 29 C -0.197 4.197 30 C -0.197 4.197 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.124 0.876 35 H 0.054 0.946 36 H 0.149 0.851 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.153 0.847 41 H 0.218 0.782 42 H 0.091 0.909 43 H 0.166 0.834 44 H 0.066 0.934 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.114 0.886 48 H 0.083 0.917 49 H 0.100 0.900 50 H 0.071 0.929 51 H 0.065 0.935 52 H 0.086 0.914 53 H 0.079 0.921 54 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 20.865 -13.320 -14.593 28.736 hybrid contribution 0.440 0.320 2.026 2.098 sum 21.305 -13.000 -12.567 27.943 Atomic orbital electron populations 1.22160 0.95229 1.02374 1.02365 1.22277 0.96035 0.86515 1.02174 1.58417 1.19545 1.17090 1.26403 1.18630 0.92499 0.96882 0.88610 1.20841 0.96511 1.01374 0.96908 1.19799 0.95195 0.96747 0.93988 1.20836 0.92470 0.99665 1.02676 1.18488 0.94203 1.02855 0.92393 1.24634 0.92961 0.99517 0.97787 1.75451 1.18975 1.05597 1.05195 1.47501 1.14058 1.60812 1.12246 1.17073 0.78993 0.79309 0.89141 1.90666 1.48617 1.62648 1.47802 1.20258 0.98736 1.40108 1.00786 0.88918 1.27127 0.95044 0.94286 1.02407 1.70186 1.03888 1.33702 1.34974 0.84873 0.79148 0.78091 0.75292 1.18263 1.16907 1.19431 1.21005 0.93902 0.96738 0.97400 1.19797 0.96926 1.02901 0.93197 1.20143 0.90349 0.99314 0.96499 0.89138 1.21868 1.01249 1.00429 0.96356 1.22294 1.02062 0.98190 0.94822 1.21226 0.84561 0.97037 0.95537 1.21901 1.01907 0.94404 1.01492 1.21962 1.03028 0.99199 0.95464 0.93058 0.91951 0.90996 0.87564 0.94598 0.85143 0.93720 0.92401 0.91110 0.84693 0.78207 0.90898 0.83409 0.93393 0.90707 0.91929 0.88604 0.91713 0.90034 0.92945 0.93507 0.91403 0.92058 0.90103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.02 8.98 71.98 0.65 -2.37 16 2 C 0.05 0.90 4.85 86.30 0.42 1.32 16 3 N -0.50 -9.57 4.14 -648.54 -2.69 -12.25 16 4 C 0.13 3.20 4.46 38.76 0.17 3.37 16 5 C -0.14 -4.01 7.25 22.27 0.16 -3.85 16 6 C -0.05 -1.89 5.88 -19.82 -0.12 -2.01 16 7 C -0.10 -4.16 8.62 71.24 0.61 -3.54 16 8 C -0.08 -2.48 5.88 -20.10 -0.12 -2.60 16 9 C 0.06 2.13 10.71 87.02 0.93 3.06 16 10 N -0.24 -11.50 7.02 -52.32 -0.37 -11.86 16 11 N -0.60 -30.19 6.26 -180.63 -1.13 -31.32 16 12 C 0.55 33.39 7.65 84.79 0.65 34.03 16 13 O -0.61 -43.26 15.19 -5.34 -0.08 -43.34 16 14 C -0.56 -32.14 9.25 23.29 0.22 -31.92 16 15 H 0.09 4.65 7.85 -2.91 -0.02 4.62 16 16 C 0.03 1.66 5.50 85.35 0.47 2.13 16 17 N -0.80 -48.96 11.70 21.86 0.26 -48.70 16 18 Si 1.01 40.09 29.56 68.60 2.03 42.11 16 19 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 20 H -0.25 -9.02 7.11 99.48 0.71 -8.31 16 21 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 22 C -0.07 -1.70 8.77 22.44 0.20 -1.50 16 23 C -0.13 -2.75 4.54 -19.93 -0.09 -2.84 16 24 C -0.04 -0.67 2.21 -11.48 -0.03 -0.69 16 25 H 0.09 1.26 7.03 -2.39 -0.02 1.24 16 26 C -0.14 -1.79 8.74 71.98 0.63 -1.16 16 27 C -0.14 -1.65 4.29 30.74 0.13 -1.52 16 28 C 0.10 1.48 0.71 3.75 0.00 1.49 16 29 C -0.14 -2.13 7.92 71.98 0.57 -1.56 16 30 C -0.14 -1.37 7.62 71.98 0.55 -0.82 16 31 H 0.05 1.18 5.01 -2.38 -0.01 1.17 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.11 1.31 5.40 -2.39 -0.01 1.29 16 35 H 0.04 0.63 7.11 -2.39 -0.02 0.61 16 36 H 0.13 3.70 6.14 -2.91 -0.02 3.68 16 37 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.06 2.15 8.02 -2.39 -0.02 2.13 16 39 H 0.07 3.49 5.66 -2.39 -0.01 3.47 16 40 H 0.14 3.85 8.03 -2.91 -0.02 3.83 16 41 H 0.38 15.94 8.62 -213.31 -1.84 14.10 16 42 H 0.28 15.37 8.29 -92.71 -0.77 14.60 16 43 H 0.15 2.79 6.48 -2.91 -0.02 2.77 16 44 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 45 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 46 H 0.06 0.78 6.52 -2.39 -0.02 0.76 16 47 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.06 0.86 6.71 -2.39 -0.02 0.84 16 49 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 50 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.05 0.88 5.52 -2.39 -0.01 0.87 16 52 H 0.07 0.56 6.46 -2.38 -0.02 0.54 16 53 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 54 H 0.08 0.55 8.13 -2.39 -0.02 0.53 16 Total: -1.00 -80.54 409.27 3.11 -77.43 By element: Atomic # 1 Polarization: 39.82 SS G_CDS: -0.91 Total: 38.91 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: 6.01 Total: -10.98 kcal Atomic # 7 Polarization: -100.21 SS G_CDS: -3.93 Total: -104.14 kcal Atomic # 8 Polarization: -43.26 SS G_CDS: -0.08 Total: -43.34 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.11 kcal Total: -80.54 3.11 -77.43 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223572647.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.862 kcal (2) G-P(sol) polarization free energy of solvation -80.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds