Wall clock time and date at job start Tue Mar 31 2020 05:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.50532 * 2 1 4 4 C 1.53051 * 109.49055 * 239.94742 * 2 1 3 5 5 N 1.46954 * 109.36634 * 181.63263 * 4 2 1 6 6 C 1.46899 * 110.99877 * 183.18947 * 5 4 2 7 7 C 1.52997 * 109.47433 * 52.46592 * 6 5 4 8 8 H 1.09010 * 109.47005 * 302.51859 * 7 6 5 9 9 C 1.47200 * 109.47397 * 62.51410 * 7 6 5 10 10 N 4.88474 * 122.40432 * 296.22526 * 2 1 3 11 11 C 1.52998 * 109.47509 * 182.52011 * 7 6 5 12 12 C 1.50698 * 109.47322 * 175.00072 * 11 7 6 13 13 H 1.07994 * 120.00079 * 359.97438 * 12 11 7 14 14 C 1.37877 * 119.99812 * 179.97438 * 12 11 7 15 15 N 1.31519 * 120.00440 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99917 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47414 * 180.02562 * 16 14 12 18 18 H 1.48507 * 109.47329 * 299.99984 * 16 14 12 19 19 H 1.48501 * 109.47114 * 60.00095 * 16 14 12 20 20 C 1.46954 * 110.88081 * 59.31838 * 5 4 2 21 21 C 1.53042 * 109.36534 * 300.68015 * 20 5 4 22 22 N 1.46954 * 109.48863 * 120.05494 * 2 1 3 23 23 C 1.46899 * 111.00300 * 303.15564 * 22 2 1 24 24 C 1.53002 * 109.47016 * 159.39439 * 23 22 2 25 25 H 1.09001 * 109.47121 * 305.34295 * 24 23 22 26 26 O 1.42895 * 109.47175 * 65.34925 * 24 23 22 27 27 C 1.50710 * 109.46808 * 185.34558 * 24 23 22 28 28 C 1.38235 * 119.99715 * 279.72634 * 27 24 23 29 29 C 1.38233 * 119.99442 * 179.74670 * 28 27 24 30 30 C 1.38240 * 120.00040 * 0.52686 * 29 28 27 31 31 C 1.38236 * 119.99897 * 359.74732 * 30 29 28 32 32 C 1.38231 * 120.00012 * 359.97438 * 31 30 29 33 33 H 1.08999 * 109.47380 * 306.88272 * 1 2 3 34 34 H 1.08997 * 109.47562 * 66.89034 * 1 2 3 35 35 H 1.09008 * 109.46616 * 186.89023 * 1 2 3 36 36 H 1.09005 * 109.48864 * 61.65872 * 4 2 1 37 37 H 1.09001 * 109.48645 * 301.59667 * 4 2 1 38 38 H 1.08999 * 109.47121 * 292.46681 * 6 5 4 39 39 H 1.09001 * 109.47359 * 172.46435 * 6 5 4 40 40 H 1.09000 * 109.47333 * 54.99401 * 11 7 6 41 41 H 1.09003 * 109.46834 * 294.99874 * 11 7 6 42 42 H 0.97004 * 119.99159 * 359.97438 * 15 14 12 43 43 H 1.08999 * 109.49029 * 60.64889 * 20 5 4 44 44 H 1.09001 * 109.48453 * 180.69402 * 20 5 4 45 45 H 1.09007 * 109.49305 * 178.36995 * 21 20 5 46 46 H 1.08999 * 109.49304 * 298.43820 * 21 20 5 47 47 H 1.08998 * 109.47050 * 279.39717 * 23 22 2 48 48 H 1.09004 * 109.46676 * 39.39639 * 23 22 2 49 49 H 0.96696 * 114.00347 * 59.99922 * 26 24 23 50 50 H 1.07997 * 119.99988 * 359.97438 * 28 27 24 51 51 H 1.07998 * 120.00302 * 180.29733 * 29 28 27 52 52 H 1.07998 * 119.99660 * 179.76919 * 30 29 28 53 53 H 1.08003 * 119.99346 * 179.97438 * 31 30 29 54 54 H 1.08001 * 119.99778 * 179.97438 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0407 -0.7225 -1.2488 5 7 3.5097 -0.7552 -1.2265 6 6 4.0411 -1.3751 -2.4477 7 6 3.4372 -0.6868 -3.6734 8 1 2.3502 -0.7561 -3.6303 9 6 3.8381 0.7295 -3.6882 10 7 4.1477 1.8225 -3.6996 11 6 3.9420 -1.3730 -4.9442 12 6 3.2538 -0.7763 -6.1447 13 1 2.5286 0.0132 -6.0143 14 6 3.5501 -1.2382 -7.4095 15 7 4.4337 -2.1993 -7.5684 16 14 2.6965 -0.4990 -8.8976 17 1 3.1866 -1.1650 -10.1311 18 1 1.2299 -0.6989 -8.7771 19 1 2.9939 0.9543 -8.9676 20 6 3.9999 -1.4491 -0.0274 21 6 3.4894 -0.7265 1.2214 22 7 2.0203 -0.6938 1.1991 23 6 1.4889 -0.0740 2.4203 24 6 1.5738 -1.0717 3.5771 25 1 1.0680 -1.9960 3.2976 26 8 2.9452 -1.3482 3.8680 27 6 0.9101 -0.4848 4.7963 28 6 1.5912 0.4249 5.5834 29 6 0.9805 0.9671 6.6987 30 6 -0.3071 0.5914 7.0331 31 6 -0.9860 -0.3226 6.2491 32 6 -0.3775 -0.8605 5.1306 33 1 -0.3634 0.6168 0.8220 34 1 -0.3634 0.4033 -0.9451 35 1 -0.3633 -1.0203 0.1233 36 1 1.7021 -0.1929 -2.1394 37 1 1.6544 -1.7417 -1.2627 38 1 3.7812 -2.4336 -2.4606 39 1 5.1255 -1.2669 -2.4678 40 1 3.7230 -2.4396 -4.8927 41 1 5.0186 -1.2271 -5.0327 42 1 4.8772 -2.5829 -6.7957 43 1 3.6360 -2.4765 -0.0274 44 1 5.0899 -1.4493 -0.0276 45 1 3.8278 -1.2562 2.1120 46 1 3.8755 0.2927 1.2353 47 1 2.0743 0.8131 2.6618 48 1 0.4485 0.2096 2.2606 49 1 3.4576 -0.5695 4.1247 50 1 2.5989 0.7147 5.3249 51 1 1.5107 1.6815 7.3110 52 1 -0.7828 1.0123 7.9066 53 1 -1.9919 -0.6164 6.5107 54 1 -0.9078 -1.5749 4.5183 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229513589.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:36 Heat of formation + Delta-G solvation = -12.858359 kcal Electronic energy + Delta-G solvation = -31811.285360 eV Core-core repulsion = 27746.799432 eV Total energy + Delta-G solvation = -4064.485928 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 357.216 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.11495 -40.27968 -38.75728 -37.69260 -36.35271 -35.67665 -33.64414 -33.20941 -32.60451 -31.75321 -30.09405 -28.07718 -28.03108 -26.46667 -24.47175 -24.15217 -23.47451 -23.28688 -22.51732 -21.83873 -20.70167 -19.09026 -18.56379 -18.27919 -17.19102 -17.02351 -16.89037 -16.41615 -16.19915 -15.96240 -15.92902 -15.66773 -15.37665 -15.24211 -15.06426 -14.96499 -14.54264 -14.23559 -14.11021 -13.96921 -13.92847 -13.75703 -13.57160 -13.45021 -13.28352 -12.99764 -12.87219 -12.77354 -12.59653 -12.48759 -12.40185 -12.31038 -12.13019 -12.00990 -11.98501 -11.85546 -11.76273 -11.64700 -11.37181 -10.80547 -10.61033 -10.52976 -9.83339 -9.69496 -9.37344 -9.22072 -8.64253 -6.35367 0.38849 0.49073 1.53456 1.59866 1.78939 1.93465 2.00906 2.55779 2.70497 2.84800 2.91186 3.16445 3.24038 3.50035 3.73529 3.82665 3.87371 3.93700 3.97011 4.10894 4.17190 4.18845 4.19672 4.29372 4.30669 4.36116 4.43997 4.47271 4.53563 4.59067 4.62430 4.66064 4.67005 4.75465 4.84143 4.86199 4.92046 4.96110 4.99733 5.06893 5.11442 5.13522 5.16806 5.17953 5.32295 5.35520 5.54983 5.62137 5.65346 5.87470 5.97600 5.99497 6.09303 6.17676 6.18047 6.20612 6.61409 6.72551 6.78064 7.42346 8.77696 Molecular weight = 357.22amu Principal moments of inertia in cm(-1) A = 0.023213 B = 0.001796 C = 0.001755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.939252 B =15585.897402 C =15955.029900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.087 3.913 3 H 0.027 0.973 4 C 0.057 3.943 5 N -0.554 5.554 6 C 0.073 3.927 7 C 0.024 3.976 8 H 0.116 0.884 9 C 0.264 3.736 10 N -0.506 5.506 11 C 0.022 3.978 12 C -0.615 4.615 13 H 0.045 0.955 14 C -0.030 4.030 15 N -0.934 5.934 16 Si 1.105 2.895 17 H -0.283 1.283 18 H -0.264 1.264 19 H -0.283 1.283 20 C 0.059 3.941 21 C 0.053 3.947 22 N -0.528 5.528 23 C 0.029 3.971 24 C 0.166 3.834 25 H 0.107 0.893 26 O -0.559 6.559 27 C -0.124 4.124 28 C -0.122 4.122 29 C -0.128 4.128 30 C -0.129 4.129 31 C -0.128 4.128 32 C -0.120 4.120 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.049 0.951 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.031 0.969 41 H -0.002 1.002 42 H 0.261 0.739 43 H 0.044 0.956 44 H 0.083 0.917 45 H 0.118 0.882 46 H 0.024 0.976 47 H 0.038 0.962 48 H 0.093 0.907 49 H 0.381 0.619 50 H 0.132 0.868 51 H 0.138 0.862 52 H 0.139 0.861 53 H 0.139 0.861 54 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.569 1.307 31.828 33.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 H 0.045 0.955 4 C -0.071 4.071 5 N -0.279 5.279 6 C -0.055 4.055 7 C 0.002 3.998 8 H 0.133 0.867 9 C -0.053 4.053 10 N -0.183 5.183 11 C -0.016 4.016 12 C -0.653 4.653 13 H 0.064 0.936 14 C -0.229 4.229 15 N -0.571 5.571 16 Si 0.928 3.072 17 H -0.208 1.208 18 H -0.188 1.188 19 H -0.209 1.209 20 C -0.069 4.069 21 C -0.075 4.075 22 N -0.253 5.253 23 C -0.099 4.099 24 C 0.107 3.893 25 H 0.124 0.876 26 O -0.366 6.366 27 C -0.125 4.125 28 C -0.140 4.140 29 C -0.146 4.146 30 C -0.147 4.147 31 C -0.145 4.145 32 C -0.138 4.138 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.049 0.951 41 H 0.016 0.984 42 H 0.071 0.929 43 H 0.063 0.937 44 H 0.101 0.899 45 H 0.135 0.865 46 H 0.042 0.958 47 H 0.057 0.943 48 H 0.111 0.889 49 H 0.230 0.770 50 H 0.149 0.851 51 H 0.155 0.845 52 H 0.156 0.844 53 H 0.157 0.843 54 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.377 2.269 30.026 31.850 hybrid contribution 0.480 0.398 1.393 1.526 sum -9.897 2.668 31.419 33.049 Atomic orbital electron populations 1.21863 0.92621 1.03113 1.02415 1.21607 0.96145 0.94808 0.89656 0.95505 1.22292 0.87136 1.00061 0.97661 1.62221 1.08993 1.54387 1.02328 1.22064 1.00004 0.96726 0.86754 1.19126 1.02244 0.81714 0.96727 0.86685 1.29220 0.91601 0.94865 0.89593 1.80974 1.10980 1.14179 1.12207 1.19144 0.95371 0.96042 0.91081 1.22339 1.26535 1.22513 0.93892 0.93618 1.27074 0.96406 0.95363 1.04044 1.70915 1.26299 1.25792 1.34119 0.83062 0.76120 0.75153 0.72851 1.20786 1.18836 1.20941 1.22188 1.00101 0.95982 0.88642 1.22513 0.86903 0.99068 0.99014 1.62160 1.08786 1.53069 1.01256 1.22867 1.01748 0.95306 0.89981 1.20690 0.81829 0.98057 0.88723 0.87551 1.86609 1.21129 1.39020 1.89870 1.20592 0.95699 0.98377 0.97821 1.21120 1.00459 0.96839 0.95603 1.21419 0.95718 1.00199 0.97269 1.21509 0.95156 0.97756 1.00315 1.21450 1.00864 0.97189 0.95034 1.21255 0.94636 1.00250 0.97694 0.91403 0.91768 0.91085 0.91026 0.93240 0.91511 0.90318 0.95101 0.98394 0.92931 0.93729 0.89878 0.86460 0.95796 0.94335 0.88877 0.76963 0.85064 0.84455 0.84362 0.84326 0.84915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 8.73 71.98 0.63 -1.85 16 2 C 0.09 1.89 2.56 44.92 0.12 2.00 16 3 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 4 C 0.06 1.42 4.41 86.31 0.38 1.81 16 5 N -0.55 -14.98 4.45 -895.74 -3.98 -18.97 16 6 C 0.07 2.18 4.52 86.30 0.39 2.57 16 7 C 0.02 0.87 1.76 -12.60 -0.02 0.85 16 8 H 0.12 4.00 6.10 -2.38 -0.01 3.99 16 9 C 0.26 11.17 13.51 89.44 1.21 12.38 16 10 N -0.51 -23.30 18.54 20.01 0.37 -22.93 16 11 C 0.02 1.04 3.74 29.85 0.11 1.15 16 12 C -0.61 -33.13 8.60 25.60 0.22 -32.91 16 13 H 0.05 2.46 7.59 -2.91 -0.02 2.44 16 14 C -0.03 -1.68 5.46 84.65 0.46 -1.21 16 15 N -0.93 -55.47 13.65 21.45 0.29 -55.18 16 16 Si 1.11 49.92 29.90 68.60 2.05 51.98 16 17 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 18 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 C 0.06 1.32 5.62 86.31 0.48 1.80 16 21 C 0.05 1.05 5.32 86.31 0.46 1.50 16 22 N -0.53 -10.12 4.45 -870.48 -3.87 -13.99 16 23 C 0.03 0.44 4.64 86.30 0.40 0.84 16 24 C 0.17 2.34 3.44 29.85 0.10 2.44 16 25 H 0.11 1.68 8.00 -2.39 -0.02 1.66 16 26 O -0.56 -8.21 10.31 -148.98 -1.54 -9.74 16 27 C -0.12 -1.67 4.97 -19.86 -0.10 -1.77 16 28 C -0.12 -1.49 9.32 22.27 0.21 -1.28 16 29 C -0.13 -1.45 10.05 22.27 0.22 -1.22 16 30 C -0.13 -1.42 10.05 22.27 0.22 -1.19 16 31 C -0.13 -1.46 10.05 22.27 0.22 -1.23 16 32 C -0.12 -1.54 9.67 22.27 0.22 -1.33 16 33 H 0.07 1.01 6.34 -2.39 -0.02 1.00 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.07 1.97 5.88 -2.38 -0.01 1.96 16 37 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.03 1.42 8.01 -2.39 -0.02 1.40 16 41 H 0.00 -0.11 8.00 -2.39 -0.02 -0.13 16 42 H 0.26 15.35 7.22 -92.71 -0.67 14.69 16 43 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 44 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.12 2.06 5.31 -2.38 -0.01 2.05 16 46 H 0.02 0.53 8.13 -2.39 -0.02 0.51 16 47 H 0.04 0.60 7.98 -2.39 -0.02 0.58 16 48 H 0.09 1.36 5.50 -2.38 -0.01 1.35 16 49 H 0.38 3.46 7.47 -74.06 -0.55 2.91 16 50 H 0.13 1.12 6.78 -2.91 -0.02 1.10 16 51 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16 52 H 0.14 0.94 8.06 -2.91 -0.02 0.91 16 53 H 0.14 1.03 8.06 -2.91 -0.02 1.01 16 54 H 0.13 1.37 8.04 -2.91 -0.02 1.34 16 Total: -1.00 -68.35 424.67 -0.30 -68.65 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.44 Total: 16.84 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: 5.94 Total: -16.66 kcal Atomic # 7 Polarization: -103.87 SS G_CDS: -7.19 Total: -111.07 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -1.54 Total: -9.74 kcal Atomic # 14 Polarization: 49.92 SS G_CDS: 2.05 Total: 51.98 kcal Total: -68.35 -0.30 -68.65 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229513589.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.796 kcal (2) G-P(sol) polarization free energy of solvation -68.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds