Wall clock time and date at job start Tue Mar 31 2020 05:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42901 * 109.46776 * 147.40564 * 3 2 1 5 5 C 1.35906 * 116.99789 * 179.97438 * 4 3 2 6 6 C 1.38736 * 120.05059 * 179.97438 * 5 4 3 7 7 C 1.38150 * 119.93951 * 180.02562 * 6 5 4 8 8 C 1.38268 * 120.05555 * 0.02562 * 7 6 5 9 9 C 1.50694 * 119.94311 * 179.97438 * 8 7 6 10 10 C 1.50701 * 109.47045 * 90.00557 * 9 8 7 11 11 O 1.21280 * 120.00005 * 359.97438 * 10 9 8 12 12 N 1.34774 * 119.99675 * 180.02562 * 10 9 8 13 13 C 1.46968 * 120.59242 * 179.97438 * 12 10 9 14 14 C 1.53365 * 108.63820 * 235.24772 * 13 12 10 15 15 N 1.46966 * 108.63402 * 310.57615 * 14 13 12 16 16 C 1.34777 * 120.59464 * 235.20106 * 15 14 13 17 17 O 1.21686 * 119.99982 * 5.22418 * 16 15 14 18 18 C 1.46371 * 120.00043 * 185.21833 * 16 15 14 19 19 H 1.07992 * 120.00360 * 354.99064 * 18 16 15 20 20 C 1.40054 * 119.99966 * 174.98237 * 18 16 15 21 21 N 1.30673 * 119.99691 * 0.02562 * 20 18 16 22 22 Si 1.86795 * 120.00179 * 180.02562 * 20 18 16 23 23 H 1.48493 * 109.47393 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47198 * 300.00255 * 22 20 18 25 25 H 1.48507 * 109.47275 * 60.00111 * 22 20 18 26 26 C 1.46966 * 118.81172 * 55.47838 * 15 14 13 27 27 C 1.46966 * 120.59674 * 0.02562 * 12 10 9 28 28 C 1.38274 * 120.11090 * 0.25578 * 8 7 6 29 29 C 1.38141 * 120.05321 * 359.44848 * 28 8 7 30 30 H 1.08992 * 109.47408 * 27.40432 * 3 2 1 31 31 H 1.09000 * 109.46997 * 267.40093 * 3 2 1 32 32 H 1.07992 * 120.03248 * 0.02562 * 6 5 4 33 33 H 1.07997 * 119.97009 * 180.02562 * 7 6 5 34 34 H 1.09004 * 109.47320 * 330.00519 * 9 8 7 35 35 H 1.09006 * 109.46981 * 210.00557 * 9 8 7 36 36 H 1.09002 * 109.60813 * 115.49903 * 13 12 10 37 37 H 1.09008 * 109.74822 * 355.07617 * 13 12 10 38 38 H 1.08998 * 109.61339 * 190.82833 * 14 13 12 39 39 H 1.08995 * 109.75272 * 70.39927 * 14 13 12 40 40 H 0.97000 * 119.99587 * 180.02562 * 21 20 18 41 41 H 1.08993 * 109.61294 * 64.26706 * 26 15 14 42 42 H 1.09002 * 109.60786 * 184.78204 * 26 15 14 43 43 H 1.09007 * 109.60611 * 244.49591 * 27 12 10 44 44 H 1.08995 * 109.60794 * 4.83547 * 27 12 10 45 45 H 1.08000 * 119.96744 * 179.70265 * 28 8 7 46 46 H 1.08000 * 120.02859 * 180.25448 * 29 28 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 8 3.0837 1.1360 -0.7258 5 6 4.4310 1.2869 -0.8213 6 6 4.9619 2.3666 -1.5121 7 6 6.3318 2.5175 -1.6081 8 6 7.1734 1.5934 -1.0170 9 6 8.6673 1.7602 -1.1239 10 6 9.1654 2.5813 0.0374 11 8 8.3842 2.9912 0.8696 12 7 10.4789 2.8611 0.1506 13 6 10.9789 3.6612 1.2774 14 6 11.7596 4.8580 0.7205 15 7 12.7176 4.3689 -0.2809 16 6 14.0310 4.6494 -0.1682 17 8 14.4466 5.2309 0.8166 18 6 14.9575 4.2546 -1.2304 19 1 14.6035 3.6682 -2.0653 20 6 16.3031 4.6374 -1.1639 21 7 16.7314 5.3466 -0.1535 22 14 17.4853 4.1341 -2.5198 23 1 18.8400 4.6609 -2.2160 24 1 17.5376 2.6526 -2.6062 25 1 17.0180 4.6893 -3.8154 26 6 12.2169 3.5736 -1.4109 27 6 11.4368 2.3725 -0.8512 28 6 6.6467 0.5133 -0.3330 29 6 5.2776 0.3613 -0.2289 30 1 2.9718 -0.9114 -0.4730 31 1 2.9713 0.0474 1.0266 32 1 4.3050 3.0885 -1.9743 33 1 6.7456 3.3581 -2.1454 34 1 8.9105 2.2668 -2.0579 35 1 9.1444 0.7802 -1.1072 36 1 11.6370 3.0508 1.8959 37 1 10.1409 4.0177 1.8765 38 1 12.2968 5.3529 1.5296 39 1 11.0708 5.5624 0.2543 40 1 17.6633 5.6120 -0.1077 41 1 11.5579 4.1863 -2.0260 42 1 13.0562 3.2199 -2.0096 43 1 12.1277 1.6702 -0.3847 44 1 10.8997 1.8753 -1.6589 45 1 7.3062 -0.2097 0.1237 46 1 4.8666 -0.4802 0.3090 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253420564.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:03 Heat of formation + Delta-G solvation = -32.189150 kcal Electronic energy + Delta-G solvation = -30213.484158 eV Core-core repulsion = 25876.493795 eV Total energy + Delta-G solvation = -4336.990363 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.152 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.76804 -40.01571 -38.42273 -37.72594 -36.83268 -35.84270 -33.21956 -32.61370 -32.51375 -31.42390 -30.98464 -29.49723 -27.72971 -26.96350 -25.75006 -23.31956 -23.20661 -22.45599 -21.54649 -19.88372 -18.82860 -18.72279 -18.48054 -17.31734 -16.81533 -16.31223 -16.13546 -15.99266 -15.71858 -15.27488 -15.11083 -14.68785 -14.54945 -14.21309 -14.13805 -14.06551 -13.90488 -13.78231 -13.58640 -13.47464 -13.13954 -12.72736 -12.68530 -12.54803 -12.13215 -12.05331 -11.76177 -11.66359 -11.47643 -11.38945 -11.22588 -11.15301 -11.04578 -10.99333 -10.77909 -10.32287 -10.15612 -9.71123 -9.26484 -8.96567 -8.67436 -8.44006 -7.70616 -7.30702 -6.29538 -4.76000 1.05652 1.10201 1.59701 2.10246 2.69874 2.85800 3.04230 3.08175 3.14125 3.15418 3.50870 3.52043 3.99740 4.28298 4.40065 4.44389 4.46528 4.47746 4.49233 4.58514 4.65481 4.91664 5.05714 5.20138 5.20783 5.26498 5.31941 5.41051 5.49381 5.53854 5.58176 5.73838 5.86225 5.90264 5.93462 5.99442 6.04003 6.22757 6.31677 6.35140 6.38967 6.47854 6.69141 6.80767 6.92813 7.34505 7.44375 7.53246 7.99168 8.20764 8.26342 8.91575 9.29617 10.46388 10.64798 Molecular weight = 357.15amu Principal moments of inertia in cm(-1) A = 0.030852 B = 0.001627 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.342469 B =17204.829879 C =17653.450297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C 0.210 3.790 3 C 0.159 3.841 4 O -0.311 6.311 5 C 0.122 3.878 6 C -0.142 4.142 7 C -0.064 4.064 8 C -0.091 4.091 9 C -0.100 4.100 10 C 0.513 3.487 11 O -0.542 6.542 12 N -0.606 5.606 13 C 0.100 3.900 14 C 0.107 3.893 15 N -0.643 5.643 16 C 0.559 3.441 17 O -0.575 6.575 18 C -0.546 4.546 19 H 0.073 0.927 20 C 0.088 3.912 21 N -0.766 5.766 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.267 1.267 25 H -0.267 1.267 26 C 0.109 3.891 27 C 0.088 3.912 28 C -0.064 4.064 29 C -0.204 4.204 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.046 0.954 40 H 0.270 0.730 41 H 0.048 0.952 42 H 0.106 0.894 43 H 0.074 0.926 44 H 0.085 0.915 45 H 0.125 0.875 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.256 -13.013 -4.692 23.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.076 5.076 2 C -0.109 4.109 3 C 0.081 3.919 4 O -0.224 6.224 5 C 0.078 3.922 6 C -0.160 4.160 7 C -0.082 4.082 8 C -0.092 4.092 9 C -0.140 4.140 10 C 0.301 3.699 11 O -0.420 6.420 12 N -0.339 5.339 13 C -0.023 4.023 14 C -0.017 4.017 15 N -0.382 5.382 16 C 0.365 3.635 17 O -0.457 6.457 18 C -0.582 4.582 19 H 0.091 0.909 20 C -0.132 4.132 21 N -0.394 5.394 22 Si 0.732 3.268 23 H -0.205 1.205 24 H -0.192 1.192 25 H -0.192 1.192 26 C -0.017 4.017 27 C -0.036 4.036 28 C -0.082 4.082 29 C -0.223 4.223 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.150 0.850 33 H 0.148 0.852 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.124 0.876 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.143 0.857 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -21.069 -12.227 -3.666 24.634 hybrid contribution 1.162 -0.435 -0.637 1.394 sum -19.907 -12.661 -4.303 23.981 Atomic orbital electron populations 1.81270 1.12456 1.06285 1.07583 1.28372 0.94252 0.94392 0.93861 1.19740 0.81949 0.90702 0.99509 1.86055 1.20558 1.44584 1.71161 1.18828 0.80561 0.95642 0.97178 1.20362 0.95135 0.97821 1.02722 1.20837 0.91975 0.97701 0.97661 1.19277 0.94045 0.95905 0.99962 1.20676 0.92901 1.01775 0.98633 1.20495 0.81735 0.80697 0.86968 1.90693 1.54662 1.53468 1.43128 1.48119 1.06445 1.52867 1.26487 1.22062 0.98613 0.93425 0.88243 1.21502 0.91625 0.94315 0.94303 1.48189 1.07533 1.57403 1.25061 1.18287 0.78886 0.78944 0.87396 1.90602 1.75492 1.46316 1.33321 1.20905 0.93146 1.36735 1.07422 0.90912 1.25726 0.98634 0.93201 0.95662 1.69994 1.15814 1.26600 1.27015 0.86442 0.79315 0.79580 0.81507 1.20529 1.19202 1.19231 1.21879 0.98525 0.91212 0.90078 1.22411 0.92042 0.97800 0.91337 1.20774 0.94279 0.97055 0.96135 1.21141 0.94319 1.01130 1.05703 0.87157 0.87115 0.85033 0.85196 0.87788 0.87971 0.91376 0.89018 0.88634 0.93540 0.91906 0.93414 0.87608 0.90720 0.89674 0.85659 0.85189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -3.97 18.54 42.15 0.78 -3.18 16 2 C 0.21 1.44 15.82 -20.76 -0.33 1.11 16 3 C 0.16 0.61 5.21 34.37 0.18 0.78 16 4 O -0.31 -2.30 10.09 -19.44 -0.20 -2.50 16 5 C 0.12 1.00 6.69 -39.22 -0.26 0.73 16 6 C -0.14 -1.25 9.99 -39.43 -0.39 -1.65 16 7 C -0.06 -0.58 9.69 -39.60 -0.38 -0.97 16 8 C -0.09 -0.85 4.37 -104.60 -0.46 -1.31 16 9 C -0.10 -0.88 4.17 -29.04 -0.12 -1.00 16 10 C 0.51 6.74 7.69 -10.99 -0.08 6.66 16 11 O -0.54 -9.01 15.44 5.56 0.09 -8.92 16 12 N -0.61 -8.39 2.95 -172.24 -0.51 -8.90 16 13 C 0.10 1.59 6.59 -3.60 -0.02 1.57 16 14 C 0.11 2.01 6.60 -3.60 -0.02 1.99 16 15 N -0.64 -13.45 2.94 -173.91 -0.51 -13.96 16 16 C 0.56 14.92 7.62 -12.99 -0.10 14.82 16 17 O -0.57 -17.78 14.45 5.20 0.08 -17.70 16 18 C -0.55 -14.20 8.87 -35.63 -0.32 -14.52 16 19 H 0.07 1.67 5.66 -52.49 -0.30 1.37 16 20 C 0.09 2.31 5.50 -17.36 -0.10 2.22 16 21 N -0.77 -21.96 11.84 55.55 0.66 -21.30 16 22 Si 0.91 18.84 29.56 -169.99 -5.02 13.82 16 23 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 24 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 25 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 26 C 0.11 1.72 6.51 -3.39 -0.02 1.70 16 27 C 0.09 1.08 6.52 -3.39 -0.02 1.06 16 28 C -0.06 -0.53 9.69 -39.60 -0.38 -0.92 16 29 C -0.20 -1.44 9.04 -39.44 -0.36 -1.79 16 30 H 0.11 0.11 7.66 -51.93 -0.40 -0.29 16 31 H 0.11 0.18 7.66 -51.93 -0.40 -0.21 16 32 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 33 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.10 0.74 7.66 -51.93 -0.40 0.34 16 35 H 0.10 0.68 7.85 -51.93 -0.41 0.27 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.09 1.44 7.00 -51.92 -0.36 1.08 16 38 H 0.10 2.00 6.99 -51.93 -0.36 1.63 16 39 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.11 1.72 5.34 -51.93 -0.28 1.44 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.09 0.71 5.91 -51.93 -0.31 0.40 16 45 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 46 H 0.13 0.48 6.30 -52.49 -0.33 0.15 16 LS Contribution 390.77 15.07 5.89 5.89 Total: -1.00 -37.56 390.77 -7.58 -45.14 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: -5.63 Total: 1.12 kcal Atomic # 6 Polarization: 13.69 SS G_CDS: -3.19 Total: 10.49 kcal Atomic # 7 Polarization: -47.76 SS G_CDS: 0.42 Total: -47.34 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -0.04 Total: -29.12 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.82 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -37.56 -7.58 -45.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253420564.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.954 kcal (2) G-P(sol) polarization free energy of solvation -37.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds