Wall clock time and date at job start Tue Mar 31 2020 05:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46990 * 2 1 4 4 N 1.46896 * 109.46740 * 119.99683 * 2 1 3 5 5 C 1.38592 * 111.00191 * 214.62026 * 4 2 1 6 6 C 1.40273 * 117.46206 * 74.52491 * 5 4 2 7 7 C 1.36129 * 120.67477 * 180.39443 * 6 5 4 8 8 C 1.40420 * 119.76574 * 0.06569 * 7 6 5 9 9 C 1.46579 * 120.24963 * 179.78378 * 8 7 6 10 10 N 1.30813 * 119.99517 * 359.97438 * 9 8 7 11 11 N 1.40102 * 119.99872 * 179.97438 * 10 9 8 12 12 C 1.34780 * 120.00249 * 180.02562 * 11 10 9 13 13 O 1.22006 * 119.99587 * 0.02562 * 12 11 10 14 14 C 1.40475 * 119.99794 * 180.02562 * 12 11 10 15 15 H 1.07991 * 120.00560 * 0.02562 * 14 12 11 16 16 C 1.40186 * 119.99244 * 180.02562 * 14 12 11 17 17 N 1.30618 * 120.00424 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99487 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47313 * 90.00217 * 18 16 14 20 20 H 1.48500 * 109.46940 * 210.00295 * 18 16 14 21 21 H 1.48498 * 109.47367 * 330.00153 * 18 16 14 22 22 C 1.40164 * 119.50703 * 359.54305 * 8 7 6 23 23 C 1.36976 * 120.34295 * 0.55974 * 22 8 7 24 24 C 1.50846 * 117.97825 * 179.97438 * 23 22 8 25 25 H 1.09002 * 109.44040 * 75.02958 * 24 23 22 26 26 C 1.52994 * 109.44578 * 315.12063 * 24 23 22 27 27 C 1.53048 * 109.61402 * 195.06951 * 24 23 22 28 28 C 1.46394 * 110.99956 * 87.76320 * 4 2 1 29 29 C 1.52992 * 109.60645 * 312.16974 * 28 4 2 30 30 C 1.53000 * 109.73862 * 191.75771 * 28 4 2 31 31 H 1.09002 * 109.47241 * 300.00468 * 1 2 3 32 32 H 1.09011 * 109.47079 * 60.00213 * 1 2 3 33 33 H 1.08993 * 109.47449 * 179.97438 * 1 2 3 34 34 H 1.08994 * 109.47304 * 239.99866 * 2 1 3 35 35 H 1.09001 * 109.47640 * 55.48321 * 3 2 1 36 36 H 1.09001 * 109.47286 * 175.48408 * 3 2 1 37 37 H 1.09006 * 109.47339 * 295.48224 * 3 2 1 38 38 H 1.07999 * 119.66182 * 0.41260 * 6 5 4 39 39 H 1.07996 * 120.11439 * 180.02562 * 7 6 5 40 40 H 1.07999 * 120.00032 * 180.02562 * 9 8 7 41 41 H 0.96998 * 119.99948 * 0.02562 * 11 10 9 42 42 H 0.96999 * 119.99858 * 179.97438 * 17 16 14 43 43 H 1.07991 * 119.83053 * 180.37641 * 22 8 7 44 44 H 1.08999 * 109.47404 * 59.99785 * 26 24 23 45 45 H 1.09006 * 109.47026 * 179.97438 * 26 24 23 46 46 H 1.09001 * 109.47424 * 299.99364 * 26 24 23 47 47 H 1.08999 * 109.77568 * 72.53025 * 27 24 23 48 48 H 1.09004 * 109.77280 * 193.33152 * 27 24 23 49 49 H 1.09005 * 109.47415 * 179.17818 * 29 28 4 50 50 H 1.09004 * 109.47177 * 299.17805 * 29 28 4 51 51 H 1.09001 * 109.47280 * 59.17788 * 29 28 4 52 52 H 1.09000 * 109.47052 * 300.73531 * 30 28 4 53 53 H 1.08990 * 109.47496 * 60.74151 * 30 28 4 54 54 H 1.09005 * 109.46670 * 180.74099 * 30 28 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6924 1.1995 5 6 3.1890 -0.1125 1.6652 6 6 3.0813 1.1205 2.3252 7 6 4.1890 1.7521 2.8021 8 6 5.4534 1.1657 2.6316 9 6 6.6536 1.8387 3.1366 10 7 6.5492 2.9902 3.7485 11 7 7.6962 3.6333 4.2317 12 6 7.5886 4.8195 4.8626 13 8 6.4921 5.3329 5.0133 14 6 8.7388 5.4644 5.3467 15 1 9.7094 5.0101 5.2130 16 6 8.6267 6.6979 6.0033 17 7 7.4528 7.2472 6.1655 18 14 10.1561 7.5553 6.6476 19 1 10.7045 8.4471 5.5945 20 1 9.8048 8.3607 7.8447 21 1 11.1750 6.5396 7.0159 22 6 5.5589 -0.0704 1.9792 23 6 4.4394 -0.6980 1.5006 24 6 4.6146 -2.0259 0.8069 25 1 4.8099 -2.8000 1.5491 26 6 5.7945 -1.9420 -0.1634 27 6 3.3411 -2.3727 0.0320 28 6 2.1441 -2.1313 0.9605 29 6 0.8677 -2.6542 0.2987 30 6 2.3689 -2.8581 2.2880 31 1 -0.3634 0.5139 0.8899 32 1 -0.3634 0.5139 -0.8901 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8934 -0.5138 -0.8899 35 1 1.6121 1.9792 0.8467 36 1 3.1270 1.4436 0.0809 37 1 1.7442 1.9325 -0.9277 38 1 2.1097 1.5733 2.4567 39 1 4.0955 2.7010 3.3092 40 1 7.6242 1.3844 3.0029 41 1 8.5679 3.2249 4.1123 42 1 7.3752 8.1005 6.6202 43 1 6.5281 -0.5289 1.8506 44 1 6.7021 -1.6976 0.3885 45 1 5.9217 -2.9015 -0.6646 46 1 5.6005 -1.1672 -0.9052 47 1 3.2597 -1.7348 -0.8481 48 1 3.3675 -3.4193 -0.2714 49 1 0.9685 -3.7228 0.1085 50 1 0.0185 -2.4814 0.9600 51 1 0.7065 -2.1310 -0.6439 52 1 3.2756 -2.4799 2.7602 53 1 1.5172 -2.6850 2.9457 54 1 2.4741 -3.9273 2.1035 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260562782.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:24 Heat of formation + Delta-G solvation = 22.345730 kcal Electronic energy + Delta-G solvation = -32528.084927 eV Core-core repulsion = 28465.125564 eV Total energy + Delta-G solvation = -4062.959364 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 357.216 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.52656 -39.68451 -38.97953 -37.08056 -36.80487 -34.76917 -34.12633 -33.41403 -31.94507 -31.17791 -29.38837 -28.76742 -28.01433 -27.63764 -27.27868 -24.59745 -23.81352 -22.38925 -22.08543 -21.82611 -21.20364 -19.60201 -18.90152 -17.93536 -17.71082 -17.53295 -17.09247 -16.71473 -15.93438 -15.88864 -15.68438 -15.54815 -15.19046 -15.08294 -14.71369 -14.57881 -14.35734 -13.94697 -13.80278 -13.74081 -13.64282 -13.30265 -13.12417 -13.06198 -12.92917 -12.85612 -12.74991 -12.74398 -12.71233 -12.51436 -12.43389 -12.27617 -12.25885 -12.05207 -12.03702 -11.69818 -11.43099 -11.36649 -11.09901 -11.01409 -10.95537 -10.29176 -10.00465 -9.68092 -9.47128 -8.44223 -8.41599 -7.11747 -0.08471 0.56927 1.36220 1.37657 1.54556 1.56895 2.06297 2.34734 2.40120 2.70636 2.96656 3.63298 3.67355 3.71243 3.78301 3.87307 3.87710 4.07371 4.09423 4.19541 4.32628 4.34324 4.39465 4.41481 4.50838 4.59367 4.62565 4.71204 4.75124 4.79403 4.81226 4.86337 4.88925 4.92416 4.97223 5.00049 5.05476 5.10041 5.11896 5.15972 5.18140 5.21384 5.24142 5.29940 5.36401 5.38480 5.46161 5.50523 5.54438 5.61955 5.72430 5.79899 5.87422 6.01227 6.23016 6.55562 6.65554 6.94628 7.44362 8.39864 8.57498 Molecular weight = 357.22amu Principal moments of inertia in cm(-1) A = 0.019898 B = 0.002007 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.824526 B =13949.526994 C =14752.858247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.087 3.913 3 C -0.165 4.165 4 N -0.494 5.494 5 C 0.136 3.864 6 C -0.124 4.124 7 C -0.097 4.097 8 C -0.071 4.071 9 C 0.068 3.932 10 N -0.265 5.265 11 N -0.596 5.596 12 C 0.543 3.457 13 O -0.618 6.618 14 C -0.561 4.561 15 H 0.096 0.904 16 C 0.028 3.972 17 N -0.801 5.801 18 Si 1.012 2.988 19 H -0.257 1.257 20 H -0.269 1.269 21 H -0.244 1.244 22 C -0.072 4.072 23 C -0.122 4.122 24 C -0.045 4.045 25 H 0.092 0.908 26 C -0.142 4.142 27 C -0.136 4.136 28 C 0.106 3.894 29 C -0.144 4.144 30 C -0.139 4.139 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.069 0.931 38 H 0.125 0.875 39 H 0.097 0.903 40 H 0.137 0.863 41 H 0.383 0.617 42 H 0.282 0.718 43 H 0.149 0.851 44 H 0.062 0.938 45 H 0.074 0.926 46 H 0.047 0.953 47 H 0.064 0.936 48 H 0.096 0.904 49 H 0.078 0.922 50 H 0.064 0.936 51 H 0.071 0.929 52 H 0.047 0.953 53 H 0.052 0.948 54 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.387 -25.218 -16.450 31.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.018 4.018 3 C -0.222 4.222 4 N -0.211 5.211 5 C 0.037 3.963 6 C -0.144 4.144 7 C -0.118 4.118 8 C -0.074 4.074 9 C -0.141 4.141 10 N -0.072 5.072 11 N -0.341 5.341 12 C 0.353 3.647 13 O -0.504 6.504 14 C -0.597 4.597 15 H 0.114 0.886 16 C -0.191 4.191 17 N -0.429 5.429 18 Si 0.829 3.171 19 H -0.182 1.182 20 H -0.194 1.194 21 H -0.167 1.167 22 C -0.093 4.093 23 C -0.125 4.125 24 C -0.063 4.063 25 H 0.110 0.890 26 C -0.199 4.199 27 C -0.175 4.175 28 C 0.018 3.982 29 C -0.201 4.201 30 C -0.197 4.197 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.143 0.857 39 H 0.115 0.885 40 H 0.154 0.846 41 H 0.221 0.779 42 H 0.092 0.908 43 H 0.166 0.834 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.066 0.934 47 H 0.083 0.917 48 H 0.115 0.885 49 H 0.097 0.903 50 H 0.083 0.917 51 H 0.090 0.910 52 H 0.066 0.934 53 H 0.071 0.929 54 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -10.159 -23.835 -15.558 30.222 hybrid contribution 2.010 0.383 -0.026 2.046 sum -8.149 -23.452 -15.585 29.314 Atomic orbital electron populations 1.22290 0.92953 1.04118 1.01859 1.21711 0.96738 0.93410 0.89942 1.22402 1.00708 0.96538 1.02581 1.58523 1.26394 1.04096 1.32087 1.18537 0.88650 0.93009 0.96067 1.20842 0.98179 0.95966 0.99411 1.20923 0.92797 0.99372 0.98736 1.18508 0.90727 0.95841 1.02307 1.24609 0.98716 0.92537 0.98251 1.74994 1.15011 1.09435 1.07787 1.47316 1.04058 1.22680 1.60086 1.17161 0.90870 0.78350 0.78299 1.90663 1.30856 1.66161 1.62691 1.20265 0.94124 1.06411 1.38895 0.88616 1.27198 1.01228 0.97116 0.93521 1.70197 1.27574 1.15307 1.29784 0.84827 0.75930 0.78208 0.78139 1.18172 1.19375 1.16743 1.21020 0.99723 0.92449 0.96110 1.19812 0.91498 0.99310 1.01835 1.20147 0.96402 0.92527 0.97204 0.88976 1.21868 0.97011 1.02411 0.98655 1.22305 0.93839 1.03488 0.97874 1.21222 0.96050 0.85097 0.95869 1.22216 0.95543 1.01747 1.00614 1.21895 1.01596 1.00430 0.95749 0.93271 0.91471 0.89552 0.91431 0.92119 0.93562 0.91161 0.85744 0.88496 0.84554 0.77899 0.90809 0.83367 0.91898 0.90686 0.93427 0.91695 0.88526 0.90346 0.91670 0.91040 0.93426 0.92918 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.86 71.98 0.64 -1.48 16 2 C 0.09 1.44 2.28 44.92 0.10 1.54 16 3 C -0.17 -3.39 7.61 71.98 0.55 -2.84 16 4 N -0.49 -9.26 4.02 -625.03 -2.51 -11.77 16 5 C 0.14 3.21 3.36 38.76 0.13 3.34 16 6 C -0.12 -3.61 6.86 22.27 0.15 -3.46 16 7 C -0.10 -3.43 9.53 22.31 0.21 -3.21 16 8 C -0.07 -2.29 5.88 -20.10 -0.12 -2.40 16 9 C 0.07 2.48 10.76 87.02 0.94 3.42 16 10 N -0.27 -12.93 10.21 -52.32 -0.53 -13.46 16 11 N -0.60 -30.63 6.26 -180.62 -1.13 -31.76 16 12 C 0.54 33.98 7.65 84.79 0.65 34.63 16 13 O -0.62 -44.99 15.19 -5.33 -0.08 -45.07 16 14 C -0.56 -32.35 9.25 23.29 0.22 -32.14 16 15 H 0.10 4.81 7.85 -2.92 -0.02 4.79 16 16 C 0.03 1.56 5.50 85.35 0.47 2.03 16 17 N -0.80 -49.57 11.70 21.86 0.26 -49.31 16 18 Si 1.01 40.18 29.56 68.60 2.03 42.21 16 19 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 20 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 21 H -0.24 -8.91 7.11 99.48 0.71 -8.20 16 22 C -0.07 -1.72 8.77 22.44 0.20 -1.52 16 23 C -0.12 -2.59 4.54 -19.92 -0.09 -2.69 16 24 C -0.04 -0.64 2.21 -11.48 -0.03 -0.67 16 25 H 0.09 1.22 7.03 -2.39 -0.02 1.21 16 26 C -0.14 -1.75 8.74 71.98 0.63 -1.12 16 27 C -0.14 -1.62 4.26 30.74 0.13 -1.49 16 28 C 0.11 1.46 0.69 3.75 0.00 1.46 16 29 C -0.14 -1.39 6.81 71.98 0.49 -0.90 16 30 C -0.14 -2.04 7.93 71.98 0.57 -1.47 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.09 0.95 4.24 -2.39 -0.01 0.94 16 34 H 0.07 1.00 5.46 -2.39 -0.01 0.98 16 35 H 0.06 1.38 5.99 -2.39 -0.01 1.37 16 36 H 0.05 1.14 6.11 -2.39 -0.01 1.12 16 37 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 38 H 0.12 3.52 6.55 -2.91 -0.02 3.50 16 39 H 0.10 4.14 7.56 -2.91 -0.02 4.12 16 40 H 0.14 3.89 8.03 -2.91 -0.02 3.86 16 41 H 0.38 16.26 8.61 -213.32 -1.84 14.43 16 42 H 0.28 15.54 8.29 -92.71 -0.77 14.77 16 43 H 0.15 2.72 6.49 -2.92 -0.02 2.70 16 44 H 0.06 0.76 6.52 -2.39 -0.02 0.75 16 45 H 0.07 0.66 8.14 -2.38 -0.02 0.64 16 46 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.06 0.85 6.33 -2.39 -0.02 0.83 16 48 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 49 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 50 H 0.06 0.70 7.25 -2.38 -0.02 0.69 16 51 H 0.07 0.63 5.34 -2.39 -0.01 0.61 16 52 H 0.05 0.86 5.53 -2.39 -0.01 0.85 16 53 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 54 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 Total: -1.00 -83.35 406.19 2.96 -80.40 By element: Atomic # 1 Polarization: 38.66 SS G_CDS: -0.91 Total: 37.75 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 5.84 Total: -8.98 kcal Atomic # 7 Polarization: -102.39 SS G_CDS: -3.92 Total: -106.31 kcal Atomic # 8 Polarization: -44.99 SS G_CDS: -0.08 Total: -45.07 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Total: -83.35 2.96 -80.40 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260562782.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.742 kcal (2) G-P(sol) polarization free energy of solvation -83.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds