Wall clock time and date at job start Tue Mar 31 2020 05:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 110.83965 * 2 1 4 4 O 1.42903 * 109.46952 * 56.60535 * 3 2 1 5 5 C 1.54602 * 110.77890 * 123.40019 * 2 1 3 6 6 C 1.51577 * 102.81372 * 143.89099 * 5 2 1 7 7 C 1.37924 * 131.56765 * 163.76680 * 6 5 2 8 8 C 1.38306 * 120.07874 * 180.31963 * 7 6 5 9 9 C 1.38304 * 119.88462 * 0.02562 * 8 7 6 10 10 C 1.37910 * 120.26494 * 359.86560 * 9 8 7 11 11 C 1.38959 * 107.94818 * 343.80911 * 6 5 2 12 12 N 1.40037 * 110.97113 * 359.55034 * 11 6 5 13 13 C 1.46906 * 110.99893 * 256.29047 * 12 11 6 14 14 C 1.50697 * 109.47105 * 283.58508 * 13 12 11 15 15 O 1.21289 * 120.00055 * 353.91082 * 14 13 12 16 16 N 1.34779 * 120.00132 * 173.90397 * 14 13 12 17 17 C 1.46502 * 120.00059 * 179.97438 * 16 14 13 18 18 C 1.50706 * 109.46638 * 90.00291 * 17 16 14 19 19 H 1.07999 * 120.00089 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99615 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00263 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99922 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47367 * 59.99595 * 22 20 18 24 24 H 1.48495 * 109.47448 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46758 * 300.00124 * 22 20 18 26 26 C 1.46498 * 119.99669 * 0.02562 * 16 14 13 27 27 C 1.52997 * 109.47064 * 89.99727 * 26 16 14 28 28 C 1.47205 * 109.46969 * 179.97438 * 27 26 16 29 29 N 6.96003 * 41.72525 * 205.64571 * 2 1 3 30 30 H 1.09002 * 109.47290 * 183.39318 * 1 2 3 31 31 H 1.08999 * 109.46969 * 303.39105 * 1 2 3 32 32 H 1.08998 * 109.47613 * 63.39144 * 1 2 3 33 33 H 1.08998 * 109.46776 * 176.60491 * 3 2 1 34 34 H 1.09004 * 109.46958 * 296.60588 * 3 2 1 35 35 H 0.96695 * 114.00166 * 179.97438 * 4 3 2 36 36 H 1.09004 * 110.74069 * 262.22115 * 5 2 1 37 37 H 1.08999 * 110.74639 * 25.55809 * 5 2 1 38 38 H 1.08002 * 119.95831 * 0.29360 * 7 6 5 39 39 H 1.07998 * 120.05743 * 180.02562 * 8 7 6 40 40 H 1.07998 * 119.86770 * 179.88753 * 9 8 7 41 41 H 1.08002 * 119.90274 * 179.97438 * 10 9 8 42 42 H 1.09000 * 109.47236 * 163.58579 * 13 12 11 43 43 H 1.09001 * 109.47421 * 43.58629 * 13 12 11 44 44 H 1.08995 * 109.47428 * 209.99982 * 17 16 14 45 45 H 1.09000 * 109.47457 * 330.00977 * 17 16 14 46 46 H 0.96995 * 120.00134 * 180.02562 * 21 20 18 47 47 H 1.09003 * 109.46949 * 209.99504 * 26 16 14 48 48 H 1.08998 * 109.47509 * 329.99608 * 26 16 14 49 49 H 1.08990 * 109.47240 * 299.99463 * 27 26 16 50 50 H 1.08997 * 109.47626 * 60.00103 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0743 1.4299 0.0000 4 8 1.5507 2.1389 1.1249 5 6 2.0785 -0.7957 1.2067 6 6 3.3142 -1.4627 0.6360 7 6 4.3959 -2.0614 1.2473 8 6 5.4144 -2.5996 0.4819 9 6 5.3467 -2.5361 -0.8981 10 6 4.2662 -1.9405 -1.5143 11 6 3.2336 -1.3992 -0.7498 12 7 2.0547 -0.7610 -1.1546 13 6 1.0666 -1.7362 -1.6352 14 6 1.4479 -2.1977 -3.0181 15 8 2.3797 -1.6785 -3.5954 16 7 0.7535 -3.1876 -3.6136 17 6 1.1239 -3.6359 -4.9583 18 6 2.1350 -4.7487 -4.8560 19 1 2.4681 -5.0883 -3.8864 20 6 2.6341 -5.3339 -6.0003 21 7 2.2282 -4.9207 -7.1810 22 14 3.8869 -6.7137 -5.8736 23 1 3.2988 -7.8485 -5.1174 24 1 4.2625 -7.1681 -7.2365 25 1 5.0959 -6.2211 -5.1659 26 6 -0.3722 -3.8145 -2.9166 27 6 -1.6610 -3.0589 -3.2467 28 6 -2.7923 -3.6892 -2.5468 29 7 -3.6646 -4.1760 -2.0049 30 1 -0.3634 -1.0259 0.0608 31 1 -0.3633 0.5656 0.8580 32 1 -0.3634 0.4603 -0.9188 33 1 3.1623 1.4045 0.0609 34 1 1.7734 1.9332 -0.9189 35 1 1.8546 3.0546 1.1889 36 1 2.3444 -0.1242 2.0232 37 1 1.3557 -1.5411 1.5384 38 1 4.4478 -2.1096 2.3250 39 1 6.2610 -3.0687 0.9609 40 1 6.1430 -2.9548 -1.4955 41 1 4.2195 -1.8937 -2.5923 42 1 0.0817 -1.2703 -1.6664 43 1 1.0425 -2.5918 -0.9604 44 1 0.2367 -3.9978 -5.4779 45 1 1.5555 -2.8028 -5.5131 46 1 2.5790 -5.3327 -7.9860 47 1 -0.4666 -4.8517 -3.2382 48 1 -0.1974 -3.7820 -1.8412 49 1 -1.5667 -2.0218 -2.9251 50 1 -1.8360 -3.0914 -4.3220 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328598747.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:11 Heat of formation + Delta-G solvation = 1.865577 kcal Electronic energy + Delta-G solvation = -33139.734715 eV Core-core repulsion = 28940.054170 eV Total energy + Delta-G solvation = -4199.680544 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.36796 -38.99707 -37.66024 -36.86821 -36.22597 -35.21215 -32.96692 -32.31686 -31.35586 -30.84802 -30.04650 -27.89848 -27.05659 -26.21033 -25.44504 -24.02539 -22.69359 -21.54541 -21.21926 -19.53467 -18.56853 -17.70364 -17.65829 -16.78924 -16.57885 -16.38737 -15.78913 -15.60613 -15.38896 -15.10584 -14.73189 -14.59589 -14.51322 -14.10414 -14.08305 -13.60295 -13.35153 -13.12523 -13.09600 -12.88802 -12.79285 -12.44901 -12.39309 -12.32444 -12.14282 -11.92953 -11.80856 -11.75139 -11.50703 -11.29211 -11.15984 -11.07828 -11.00597 -10.86055 -10.62214 -10.60334 -10.18901 -10.13558 -9.73212 -9.40882 -8.84669 -8.61246 -8.47497 -7.85283 -7.79215 -6.09251 -4.13743 1.43265 1.59336 2.70375 2.78630 3.12532 3.29333 3.31435 3.34351 3.38256 3.72433 3.87462 4.18711 4.24351 4.40745 4.47677 4.59471 4.77729 4.91926 4.94211 5.02806 5.08120 5.13275 5.20553 5.26137 5.28255 5.34935 5.41916 5.43269 5.46202 5.50109 5.50880 5.57415 5.67464 5.76644 5.80487 5.91975 5.97112 6.01129 6.05379 6.21597 6.52283 6.59136 6.73069 6.86981 6.91820 7.05459 7.35039 7.38623 7.42621 7.44654 7.55191 7.86968 8.17027 8.25826 8.84720 9.00937 9.51860 10.98756 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.008016 B = 0.004133 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3492.104070 B = 6772.522300 C = 9047.162566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.111 3.889 3 C 0.099 3.901 4 O -0.572 6.572 5 C -0.096 4.096 6 C -0.145 4.145 7 C -0.100 4.100 8 C -0.132 4.132 9 C -0.109 4.109 10 C -0.090 4.090 11 C 0.092 3.908 12 N -0.465 5.465 13 C 0.029 3.971 14 C 0.509 3.491 15 O -0.510 6.510 16 N -0.598 5.598 17 C 0.247 3.753 18 C -0.527 4.527 19 H 0.057 0.943 20 C 0.064 3.936 21 N -0.894 5.894 22 Si 0.894 3.106 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.276 1.276 26 C 0.116 3.884 27 C -0.051 4.051 28 C 0.216 3.784 29 N -0.444 5.444 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.381 0.619 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.115 0.885 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.148 0.852 42 H 0.112 0.888 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.047 0.953 46 H 0.264 0.736 47 H 0.095 0.905 48 H 0.072 0.928 49 H 0.105 0.895 50 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.363 10.841 15.785 19.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.022 3.978 3 C 0.021 3.979 4 O -0.377 6.377 5 C -0.134 4.134 6 C -0.147 4.147 7 C -0.118 4.118 8 C -0.151 4.151 9 C -0.128 4.128 10 C -0.109 4.109 11 C -0.004 4.004 12 N -0.183 5.183 13 C -0.100 4.100 14 C 0.294 3.706 15 O -0.385 6.385 16 N -0.331 5.331 17 C 0.128 3.872 18 C -0.566 4.566 19 H 0.075 0.925 20 C -0.138 4.138 21 N -0.532 5.532 22 Si 0.722 3.278 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.010 4.010 27 C -0.092 4.092 28 C -0.102 4.102 29 N -0.122 5.122 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.228 0.772 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.133 0.867 39 H 0.138 0.862 40 H 0.143 0.857 41 H 0.166 0.834 42 H 0.130 0.870 43 H 0.083 0.917 44 H 0.052 0.948 45 H 0.065 0.935 46 H 0.074 0.926 47 H 0.113 0.887 48 H 0.090 0.910 49 H 0.123 0.877 50 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.381 10.150 15.699 18.845 hybrid contribution 1.204 -0.725 0.207 1.421 sum -1.176 9.425 15.906 18.526 Atomic orbital electron populations 1.22051 0.92624 1.02381 1.03506 1.21748 0.95329 0.92996 0.87715 1.21812 0.96964 0.90804 0.88345 1.86358 1.74097 1.28891 1.48380 1.21703 0.94438 0.98631 0.98605 1.20977 0.97110 1.01850 0.94776 1.20270 0.93315 0.99014 0.99244 1.21035 0.98885 1.01124 0.94028 1.21045 0.98159 0.99045 0.94538 1.21152 0.91250 0.96527 1.01994 1.19393 0.92534 0.96682 0.91761 1.59466 1.02476 1.23858 1.32511 1.22430 0.96664 0.94917 0.95958 1.20087 0.83365 0.80125 0.86990 1.90626 1.27651 1.55348 1.64880 1.48206 1.29879 1.35112 1.19867 1.19327 0.95894 0.95725 0.76206 1.21365 1.24587 1.17939 0.92738 0.92507 1.24888 0.96559 0.97190 0.95166 1.69903 1.43775 1.42140 0.97411 0.86617 0.81928 0.82135 0.77109 1.20296 1.21218 1.20163 1.21309 0.84124 0.98315 0.97280 1.19911 0.88137 0.99801 1.01373 1.29128 0.94212 0.93483 0.93366 1.81230 1.11398 1.09384 1.10165 0.91937 0.90365 0.91239 0.93195 0.92385 0.77166 0.89244 0.90180 0.86681 0.86174 0.85719 0.83429 0.87044 0.91705 0.94810 0.93505 0.92637 0.88690 0.90951 0.87689 0.86354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 7.05 37.16 0.26 -1.13 16 2 C 0.11 1.26 0.78 -130.20 -0.10 1.16 16 3 C 0.10 1.04 6.27 37.16 0.23 1.27 16 4 O -0.57 -5.02 12.46 -35.23 -0.44 -5.46 16 5 C -0.10 -1.08 5.99 -26.61 -0.16 -1.24 16 6 C -0.14 -1.95 6.23 -104.04 -0.65 -2.60 16 7 C -0.10 -1.25 10.03 -39.67 -0.40 -1.65 16 8 C -0.13 -1.68 10.06 -39.53 -0.40 -2.08 16 9 C -0.11 -1.61 10.02 -39.68 -0.40 -2.01 16 10 C -0.09 -1.54 9.27 -39.27 -0.36 -1.90 16 11 C 0.09 1.43 5.19 -83.40 -0.43 1.00 16 12 N -0.46 -6.65 4.29 -155.77 -0.67 -7.32 16 13 C 0.03 0.40 3.14 -4.97 -0.02 0.38 16 14 C 0.51 9.20 7.29 -10.99 -0.08 9.12 16 15 O -0.51 -11.36 13.21 5.55 0.07 -11.29 16 16 N -0.60 -10.67 2.46 -175.06 -0.43 -11.10 16 17 C 0.25 5.71 5.16 -5.19 -0.03 5.69 16 18 C -0.53 -13.81 9.39 -34.44 -0.32 -14.14 16 19 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -25.18 13.29 55.43 0.74 -24.44 16 22 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C 0.12 1.53 5.19 -4.04 -0.02 1.51 16 27 C -0.05 -0.51 6.03 -29.52 -0.18 -0.69 16 28 C 0.22 2.55 15.44 -20.74 -0.32 2.23 16 29 N -0.44 -6.42 18.54 42.17 0.78 -5.64 16 30 H 0.06 0.53 6.63 -51.93 -0.34 0.19 16 31 H 0.08 0.70 7.59 -51.93 -0.39 0.31 16 32 H 0.07 0.63 7.66 -51.93 -0.40 0.23 16 33 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.38 1.72 9.12 45.56 0.42 2.14 16 36 H 0.09 0.96 7.60 -51.93 -0.39 0.57 16 37 H 0.08 0.84 7.87 -51.93 -0.41 0.43 16 38 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 39 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 40 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.15 2.97 5.89 -52.49 -0.31 2.66 16 42 H 0.11 1.20 4.60 -51.93 -0.24 0.96 16 43 H 0.06 0.85 6.90 -51.93 -0.36 0.49 16 44 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 45 H 0.05 1.24 7.42 -51.93 -0.39 0.86 16 46 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 47 H 0.09 1.34 8.07 -51.93 -0.42 0.92 16 48 H 0.07 0.81 6.27 -51.93 -0.33 0.49 16 49 H 0.11 0.84 7.41 -51.93 -0.38 0.46 16 50 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 408.89 15.07 6.16 6.16 Total: -1.00 -33.36 408.89 -8.72 -42.08 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.45 Total: 4.41 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -3.47 Total: -3.43 kcal Atomic # 7 Polarization: -48.92 SS G_CDS: 0.42 Total: -48.50 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.37 Total: -16.74 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.36 -8.72 -42.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328598747.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.946 kcal (2) G-P(sol) polarization free energy of solvation -33.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds