Wall clock time and date at job start Tue Mar 31 2020 05:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 110.83965 * 2 1 4 4 O 1.42903 * 109.46952 * 56.60535 * 3 2 1 5 5 C 1.54602 * 110.77890 * 123.40019 * 2 1 3 6 6 C 1.51577 * 102.81372 * 143.89099 * 5 2 1 7 7 C 1.37924 * 131.56765 * 163.76680 * 6 5 2 8 8 C 1.38306 * 120.07874 * 180.31963 * 7 6 5 9 9 C 1.38304 * 119.88462 * 0.02562 * 8 7 6 10 10 C 1.37910 * 120.26494 * 359.86560 * 9 8 7 11 11 C 1.38959 * 107.94818 * 343.80911 * 6 5 2 12 12 N 1.40037 * 110.97113 * 359.55034 * 11 6 5 13 13 C 1.46906 * 110.99893 * 256.29047 * 12 11 6 14 14 C 1.50697 * 109.47105 * 283.58508 * 13 12 11 15 15 O 1.21289 * 120.00055 * 353.91082 * 14 13 12 16 16 N 1.34779 * 120.00132 * 173.90397 * 14 13 12 17 17 C 1.46502 * 120.00059 * 179.97438 * 16 14 13 18 18 C 1.50706 * 109.46638 * 90.00291 * 17 16 14 19 19 H 1.07999 * 120.00089 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99615 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00263 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99922 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47367 * 59.99595 * 22 20 18 24 24 H 1.48495 * 109.47448 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46758 * 300.00124 * 22 20 18 26 26 C 1.46498 * 119.99669 * 0.02562 * 16 14 13 27 27 C 1.52997 * 109.47064 * 89.99727 * 26 16 14 28 28 C 1.47205 * 109.46969 * 179.97438 * 27 26 16 29 29 N 6.96003 * 41.72525 * 205.64571 * 2 1 3 30 30 H 1.09002 * 109.47290 * 183.39318 * 1 2 3 31 31 H 1.08999 * 109.46969 * 303.39105 * 1 2 3 32 32 H 1.08998 * 109.47613 * 63.39144 * 1 2 3 33 33 H 1.08998 * 109.46776 * 176.60491 * 3 2 1 34 34 H 1.09004 * 109.46958 * 296.60588 * 3 2 1 35 35 H 0.96695 * 114.00166 * 179.97438 * 4 3 2 36 36 H 1.09004 * 110.74069 * 262.22115 * 5 2 1 37 37 H 1.08999 * 110.74639 * 25.55809 * 5 2 1 38 38 H 1.08002 * 119.95831 * 0.29360 * 7 6 5 39 39 H 1.07998 * 120.05743 * 180.02562 * 8 7 6 40 40 H 1.07998 * 119.86770 * 179.88753 * 9 8 7 41 41 H 1.08002 * 119.90274 * 179.97438 * 10 9 8 42 42 H 1.09000 * 109.47236 * 163.58579 * 13 12 11 43 43 H 1.09001 * 109.47421 * 43.58629 * 13 12 11 44 44 H 1.08995 * 109.47428 * 209.99982 * 17 16 14 45 45 H 1.09000 * 109.47457 * 330.00977 * 17 16 14 46 46 H 0.96995 * 120.00134 * 180.02562 * 21 20 18 47 47 H 1.09003 * 109.46949 * 209.99504 * 26 16 14 48 48 H 1.08998 * 109.47509 * 329.99608 * 26 16 14 49 49 H 1.08990 * 109.47240 * 299.99463 * 27 26 16 50 50 H 1.08997 * 109.47626 * 60.00103 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0743 1.4299 0.0000 4 8 1.5507 2.1389 1.1249 5 6 2.0785 -0.7957 1.2067 6 6 3.3142 -1.4627 0.6360 7 6 4.3959 -2.0614 1.2473 8 6 5.4144 -2.5996 0.4819 9 6 5.3467 -2.5361 -0.8981 10 6 4.2662 -1.9405 -1.5143 11 6 3.2336 -1.3992 -0.7498 12 7 2.0547 -0.7610 -1.1546 13 6 1.0666 -1.7362 -1.6352 14 6 1.4479 -2.1977 -3.0181 15 8 2.3797 -1.6785 -3.5954 16 7 0.7535 -3.1876 -3.6136 17 6 1.1239 -3.6359 -4.9583 18 6 2.1350 -4.7487 -4.8560 19 1 2.4681 -5.0883 -3.8864 20 6 2.6341 -5.3339 -6.0003 21 7 2.2282 -4.9207 -7.1810 22 14 3.8869 -6.7137 -5.8736 23 1 3.2988 -7.8485 -5.1174 24 1 4.2625 -7.1681 -7.2365 25 1 5.0959 -6.2211 -5.1659 26 6 -0.3722 -3.8145 -2.9166 27 6 -1.6610 -3.0589 -3.2467 28 6 -2.7923 -3.6892 -2.5468 29 7 -3.6646 -4.1760 -2.0049 30 1 -0.3634 -1.0259 0.0608 31 1 -0.3633 0.5656 0.8580 32 1 -0.3634 0.4603 -0.9188 33 1 3.1623 1.4045 0.0609 34 1 1.7734 1.9332 -0.9189 35 1 1.8546 3.0546 1.1889 36 1 2.3444 -0.1242 2.0232 37 1 1.3557 -1.5411 1.5384 38 1 4.4478 -2.1096 2.3250 39 1 6.2610 -3.0687 0.9609 40 1 6.1430 -2.9548 -1.4955 41 1 4.2195 -1.8937 -2.5923 42 1 0.0817 -1.2703 -1.6664 43 1 1.0425 -2.5918 -0.9604 44 1 0.2367 -3.9978 -5.4779 45 1 1.5555 -2.8028 -5.5131 46 1 2.5790 -5.3327 -7.9860 47 1 -0.4666 -4.8517 -3.2382 48 1 -0.1974 -3.7820 -1.8412 49 1 -1.5667 -2.0218 -2.9251 50 1 -1.8360 -3.0914 -4.3220 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328598747.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:10 Heat of formation + Delta-G solvation = -20.413048 kcal Electronic energy + Delta-G solvation = -33140.700788 eV Core-core repulsion = 28940.054170 eV Total energy + Delta-G solvation = -4200.646618 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.38894 -40.37549 -38.58113 -37.95838 -37.07915 -36.59917 -34.86576 -33.38994 -32.28144 -32.12268 -31.17690 -29.40922 -28.11366 -27.18320 -26.60121 -25.30376 -24.32059 -22.64399 -22.25693 -20.49030 -19.89213 -18.83291 -18.47071 -18.33247 -17.90683 -17.70347 -16.96978 -16.69402 -16.47658 -16.34274 -15.97015 -15.76934 -15.64596 -15.31966 -15.15034 -14.69947 -14.47481 -14.36258 -14.11087 -14.03436 -13.90935 -13.60669 -13.55104 -13.50921 -13.23187 -13.16561 -12.91928 -12.84248 -12.76943 -12.64669 -12.57021 -12.50617 -12.15870 -12.02530 -11.99885 -11.83159 -11.68609 -11.56425 -10.88127 -10.60029 -10.57232 -10.17557 -9.69778 -9.42282 -8.84986 -8.16714 -6.28297 0.37401 0.49342 1.38702 1.41346 1.47946 1.69573 1.84800 1.88666 2.12704 2.41072 2.61087 2.80890 3.12734 3.16913 3.45257 3.57510 3.69929 3.78336 3.97140 4.05640 4.09280 4.13622 4.16367 4.18982 4.27345 4.31030 4.52818 4.54341 4.60075 4.63331 4.67596 4.71596 4.77246 4.84249 4.86752 5.01602 5.05143 5.10131 5.13175 5.20213 5.25480 5.36247 5.50258 5.57391 5.61576 5.66523 5.83941 5.89922 6.00968 6.15506 6.33207 6.61390 6.77740 6.84069 6.89874 7.37074 7.59250 8.89546 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.008016 B = 0.004133 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3492.104070 B = 6772.522300 C = 9047.162566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.107 3.893 3 C 0.106 3.894 4 O -0.573 6.573 5 C -0.088 4.088 6 C -0.145 4.145 7 C -0.097 4.097 8 C -0.128 4.128 9 C -0.123 4.123 10 C -0.125 4.125 11 C 0.077 3.923 12 N -0.484 5.484 13 C 0.042 3.958 14 C 0.501 3.499 15 O -0.561 6.561 16 N -0.599 5.599 17 C 0.264 3.736 18 C -0.536 4.536 19 H 0.049 0.951 20 C 0.015 3.985 21 N -0.925 5.925 22 Si 0.951 3.049 23 H -0.265 1.265 24 H -0.282 1.282 25 H -0.280 1.280 26 C 0.112 3.888 27 C -0.038 4.038 28 C 0.245 3.755 29 N -0.487 5.487 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.034 0.966 34 H 0.053 0.947 35 H 0.400 0.600 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.126 0.874 41 H 0.104 0.896 42 H 0.148 0.852 43 H 0.078 0.922 44 H 0.034 0.966 45 H 0.004 0.996 46 H 0.265 0.735 47 H 0.083 0.917 48 H 0.100 0.900 49 H 0.137 0.863 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.426 10.962 19.153 22.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.020 3.980 3 C 0.027 3.973 4 O -0.381 6.381 5 C -0.126 4.126 6 C -0.148 4.148 7 C -0.115 4.115 8 C -0.146 4.146 9 C -0.142 4.142 10 C -0.145 4.145 11 C -0.018 4.018 12 N -0.203 5.203 13 C -0.086 4.086 14 C 0.289 3.711 15 O -0.439 6.439 16 N -0.331 5.331 17 C 0.143 3.857 18 C -0.575 4.575 19 H 0.067 0.933 20 C -0.184 4.184 21 N -0.565 5.565 22 Si 0.777 3.223 23 H -0.189 1.189 24 H -0.207 1.207 25 H -0.206 1.206 26 C -0.013 4.013 27 C -0.079 4.079 28 C -0.072 4.072 29 N -0.165 5.165 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.250 0.750 36 H 0.117 0.883 37 H 0.114 0.886 38 H 0.165 0.835 39 H 0.168 0.832 40 H 0.144 0.856 41 H 0.122 0.878 42 H 0.165 0.835 43 H 0.096 0.904 44 H 0.052 0.948 45 H 0.022 0.978 46 H 0.074 0.926 47 H 0.101 0.899 48 H 0.118 0.882 49 H 0.155 0.845 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.479 10.280 19.108 21.975 hybrid contribution 1.598 -0.683 -0.825 1.924 sum -1.881 9.598 18.284 20.735 Atomic orbital electron populations 1.22076 0.90708 1.03501 1.04169 1.21912 0.96796 0.92817 0.86514 1.21622 0.95996 0.90880 0.88799 1.86311 1.74013 1.30376 1.47408 1.21729 0.93530 0.98842 0.98506 1.21310 0.98204 1.01452 0.93838 1.20691 0.92420 0.97538 1.00862 1.21347 0.99921 1.00494 0.92871 1.21167 0.97715 0.99330 0.95990 1.20987 0.93662 0.99656 1.00174 1.19482 0.92680 0.96947 0.92736 1.59376 1.02439 1.24167 1.34315 1.22393 0.97935 0.95663 0.92576 1.20969 0.82303 0.79321 0.88473 1.90622 1.29790 1.57054 1.66451 1.48060 1.31284 1.35393 1.18332 1.18755 0.94893 0.93193 0.78880 1.21673 1.25028 1.18446 0.92311 0.93304 1.25646 0.98329 0.99481 0.94986 1.70005 1.45084 1.43419 0.97944 0.85710 0.79500 0.79805 0.77273 1.18941 1.20680 1.20600 1.21509 0.83755 0.97781 0.98224 1.19837 0.85776 1.00768 1.01520 1.29135 0.93618 0.92258 0.92197 1.81275 1.12773 1.10732 1.11709 0.90560 0.89462 0.90841 0.94783 0.92859 0.75011 0.88276 0.88649 0.83484 0.83219 0.85641 0.87802 0.83502 0.90438 0.94805 0.97787 0.92628 0.89860 0.88236 0.84492 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 7.05 71.98 0.51 -1.67 16 2 C 0.11 2.17 0.78 3.88 0.00 2.18 16 3 C 0.11 2.05 6.27 71.98 0.45 2.50 16 4 O -0.57 -8.44 12.46 -148.98 -1.86 -10.29 16 5 C -0.09 -1.69 5.99 30.67 0.18 -1.51 16 6 C -0.15 -3.62 6.23 -19.49 -0.12 -3.74 16 7 C -0.10 -2.16 10.03 22.21 0.22 -1.93 16 8 C -0.13 -3.05 10.06 22.30 0.22 -2.83 16 9 C -0.12 -3.76 10.02 22.21 0.22 -3.53 16 10 C -0.12 -4.54 9.27 22.47 0.21 -4.33 16 11 C 0.08 2.40 5.19 38.29 0.20 2.60 16 12 N -0.48 -13.44 4.29 -646.72 -2.78 -16.21 16 13 C 0.04 1.08 3.14 85.55 0.27 1.35 16 14 C 0.50 18.43 7.29 87.66 0.64 19.07 16 15 O -0.56 -26.61 13.21 -3.06 -0.04 -26.65 16 16 N -0.60 -21.53 2.46 -826.15 -2.03 -23.56 16 17 C 0.26 12.72 5.16 85.63 0.44 13.16 16 18 C -0.54 -29.02 9.39 25.60 0.24 -28.78 16 19 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 20 C 0.01 0.82 5.46 84.66 0.46 1.28 16 21 N -0.92 -53.70 13.29 21.45 0.28 -53.41 16 22 Si 0.95 43.96 29.54 68.60 2.03 45.99 16 23 H -0.26 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 25 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 26 C 0.11 2.76 5.19 86.38 0.45 3.21 16 27 C -0.04 -0.67 6.03 28.79 0.17 -0.49 16 28 C 0.25 5.16 15.44 89.44 1.38 6.54 16 29 N -0.49 -13.12 18.54 20.01 0.37 -12.75 16 30 H 0.08 0.92 6.63 -2.39 -0.02 0.91 16 31 H 0.09 1.19 7.59 -2.39 -0.02 1.17 16 32 H 0.07 1.05 7.66 -2.39 -0.02 1.03 16 33 H 0.03 0.75 8.14 -2.39 -0.02 0.74 16 34 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.40 2.57 9.12 -74.06 -0.68 1.89 16 36 H 0.10 1.75 7.60 -2.39 -0.02 1.73 16 37 H 0.10 1.57 7.87 -2.39 -0.02 1.55 16 38 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 39 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 40 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 41 H 0.10 4.65 5.89 -2.91 -0.02 4.64 16 42 H 0.15 2.63 4.60 -2.39 -0.01 2.62 16 43 H 0.08 1.81 6.90 -2.39 -0.02 1.80 16 44 H 0.03 1.61 8.07 -2.39 -0.02 1.60 16 45 H 0.00 0.23 7.42 -2.39 -0.02 0.21 16 46 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 47 H 0.08 2.28 8.07 -2.39 -0.02 2.26 16 48 H 0.10 1.93 6.27 -2.39 -0.01 1.92 16 49 H 0.14 1.63 7.41 -2.39 -0.02 1.61 16 50 H 0.12 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -77.63 408.89 2.44 -75.19 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.30 Total: 18.63 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 6.15 Total: 3.07 kcal Atomic # 7 Polarization: -101.79 SS G_CDS: -4.15 Total: -105.94 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -1.90 Total: -36.94 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -77.63 2.44 -75.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328598747.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.780 kcal (2) G-P(sol) polarization free energy of solvation -77.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds