Wall clock time and date at job start Tue Mar 31 2020 05:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30651 * 1 3 3 Si 1.86800 * 119.99994 * 2 1 4 4 H 1.48494 * 109.47155 * 274.71476 * 3 2 1 5 5 H 1.48504 * 109.47018 * 34.71817 * 3 2 1 6 6 H 1.48500 * 109.47052 * 154.71192 * 3 2 1 7 7 C 1.40228 * 119.99728 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99298 * 159.95228 * 7 2 1 9 9 C 1.41101 * 120.00049 * 339.95775 * 7 2 1 10 10 C 1.40895 * 120.10266 * 157.45040 * 9 7 2 11 11 C 1.36312 * 119.89000 * 180.02562 * 10 9 7 12 12 C 1.40008 * 120.11317 * 359.97438 * 11 10 9 13 13 C 1.47642 * 119.90066 * 180.02562 * 12 11 10 14 14 O 1.21580 * 119.99691 * 32.82243 * 13 12 11 15 15 N 1.34774 * 120.00070 * 212.82060 * 13 12 11 16 16 C 1.46922 * 120.63042 * 178.20895 * 15 13 12 17 17 C 1.53193 * 108.89766 * 233.67471 * 16 15 13 18 18 C 1.53042 * 109.31374 * 305.29843 * 17 16 15 19 19 N 1.46496 * 109.46216 * 181.38025 * 18 17 16 20 20 C 1.46376 * 119.32941 * 119.72378 * 19 18 17 21 21 C 1.53495 * 109.01420 * 150.82847 * 20 19 18 22 22 C 1.53249 * 108.43165 * 55.79209 * 21 20 19 23 23 N 1.46382 * 109.14774 * 304.38150 * 22 21 20 24 24 C 1.34134 * 121.34485 * 29.06067 * 23 22 21 25 25 O 1.21581 * 118.69858 * 179.44443 * 24 23 22 26 26 C 1.53042 * 109.53621 * 61.36099 * 18 17 16 27 27 C 1.47206 * 120.81571 * 358.35269 * 15 13 12 28 28 C 1.40018 * 120.20483 * 0.27585 * 12 11 10 29 29 C 1.36317 * 120.10447 * 359.48241 * 28 12 11 30 30 H 0.97003 * 119.99899 * 359.97438 * 1 2 3 31 31 H 1.08000 * 120.05103 * 359.97438 * 10 9 7 32 32 H 1.08003 * 119.94437 * 179.97438 * 11 10 9 33 33 H 1.09007 * 109.58562 * 113.82013 * 16 15 13 34 34 H 1.09000 * 109.58708 * 353.53843 * 16 15 13 35 35 H 1.09003 * 109.49285 * 65.24686 * 17 16 15 36 36 H 1.08995 * 109.50190 * 185.34319 * 17 16 15 37 37 H 1.08997 * 109.45745 * 301.34230 * 18 17 16 38 38 H 1.08999 * 109.52773 * 270.86724 * 20 19 18 39 39 H 1.08998 * 109.52780 * 31.06478 * 20 19 18 40 40 H 1.09001 * 109.80241 * 296.04239 * 21 20 19 41 41 H 1.09005 * 109.73397 * 175.49385 * 21 20 19 42 42 H 1.09004 * 109.52292 * 184.48392 * 22 21 20 43 43 H 1.08994 * 109.57861 * 64.31392 * 22 21 20 44 44 H 0.96999 * 119.32848 * 209.03476 * 23 22 21 45 45 H 1.09001 * 109.49845 * 58.59064 * 26 18 17 46 46 H 1.08999 * 109.49526 * 178.65201 * 26 18 17 47 47 H 1.09005 * 109.53328 * 6.53617 * 27 15 13 48 48 H 1.08994 * 109.67820 * 246.23196 * 27 15 13 49 49 H 1.07994 * 119.94692 * 179.72778 * 28 12 11 50 50 H 1.08002 * 120.05155 * 180.25515 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 2.3883 2.1039 -1.3953 5 1 1.4913 2.6218 0.7974 6 1 3.5843 1.4135 0.5981 7 6 2.0076 -1.2144 0.0005 8 1 3.0385 -1.2428 -0.3201 9 6 1.3661 -2.3992 0.4199 10 6 1.8515 -3.6529 -0.0019 11 6 1.2281 -4.7946 0.4054 12 6 0.1077 -4.7232 1.2418 13 6 -0.5635 -5.9628 1.6806 14 8 0.0859 -6.9748 1.8603 15 7 -1.8961 -5.9727 1.8819 16 6 -2.5839 -7.2082 2.2806 17 6 -3.7325 -7.4745 1.3026 18 6 -4.6410 -6.2444 1.2418 19 7 -5.7589 -6.5077 0.3324 20 6 -7.1287 -6.4546 0.8458 21 6 -8.0724 -6.0351 -0.2898 22 6 -7.8905 -7.0116 -1.4567 23 7 -6.4791 -7.0395 -1.8439 24 6 -5.5062 -6.7981 -0.9526 25 8 -4.3494 -6.8438 -1.3242 26 6 -3.8419 -5.0426 0.7329 27 6 -2.6946 -4.7488 1.7046 28 6 -0.3815 -3.4794 1.6593 29 6 0.2381 -2.3323 1.2613 30 1 -0.4850 0.8401 0.0004 31 1 2.7155 -3.7090 -0.6474 32 1 1.5992 -5.7561 0.0823 33 1 -2.9816 -7.0959 3.2893 34 1 -1.8818 -8.0417 2.2554 35 1 -3.3267 -7.6763 0.3112 36 1 -4.3079 -8.3354 1.6428 37 1 -5.0267 -6.0285 2.2381 38 1 -7.4164 -7.4377 1.2184 39 1 -7.1867 -5.7261 1.6545 40 1 -7.8296 -5.0241 -0.6172 41 1 -9.1048 -6.0690 0.0582 42 1 -8.4940 -6.6840 -2.3033 43 1 -8.2040 -8.0094 -1.1502 44 1 -6.2425 -7.2371 -2.7636 45 1 -3.4351 -5.2673 -0.2531 46 1 -4.4954 -4.1727 0.6672 47 1 -2.0643 -3.9582 1.2974 48 1 -3.1012 -4.4334 2.6654 49 1 -1.2487 -3.4290 2.3010 50 1 -0.1375 -1.3736 1.5872 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332401326.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:00 Heat of formation + Delta-G solvation = -19.097246 kcal Electronic energy + Delta-G solvation = -32562.177268 eV Core-core repulsion = 28361.587707 eV Total energy + Delta-G solvation = -4200.589561 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.03571 -39.54114 -37.44370 -36.73785 -36.53186 -34.72050 -33.87733 -31.91146 -31.24448 -30.49414 -29.67367 -29.41604 -26.43679 -25.79147 -24.70185 -23.34104 -23.10823 -21.69968 -20.95181 -20.44898 -19.15205 -18.71940 -17.68264 -17.46961 -16.96049 -16.27325 -16.03348 -15.67375 -15.25301 -15.08633 -14.64322 -14.49804 -14.36242 -14.18301 -13.98594 -13.82202 -13.66832 -13.24829 -13.01574 -12.86201 -12.52955 -12.34335 -12.24318 -11.91276 -11.83599 -11.78255 -11.72749 -11.48418 -11.24187 -11.18946 -11.03121 -10.85965 -10.68137 -10.51478 -10.38169 -10.00349 -9.73866 -9.47309 -9.22418 -9.18513 -8.85647 -8.60765 -8.11205 -7.58170 -7.47947 -6.98484 -4.52236 2.36650 2.56312 2.94337 2.97612 3.04736 3.06452 3.13469 3.56903 3.62392 3.78042 3.88835 4.27516 4.40410 4.55105 4.64422 4.78869 4.94225 5.00224 5.11320 5.14636 5.16838 5.27804 5.34606 5.50960 5.56813 5.57790 5.63618 5.71065 5.80378 5.87176 5.99749 6.06396 6.14788 6.26977 6.32400 6.37957 6.50650 6.58686 6.72822 6.83187 6.87941 6.95050 7.04535 7.15461 7.21245 7.49666 7.69830 7.75627 7.87781 7.91854 8.12164 8.20908 8.45761 8.56930 8.70249 8.82345 9.11088 9.92803 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.012280 B = 0.002662 C = 0.002365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.655282 B =10515.883225 C =11836.208135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.076 3.924 3 Si 0.910 3.090 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.257 1.257 7 C -0.445 4.445 8 H 0.083 0.917 9 C 0.126 3.874 10 C -0.237 4.237 11 C -0.025 4.025 12 C -0.276 4.276 13 C 0.578 3.422 14 O -0.572 6.572 15 N -0.614 5.614 16 C 0.119 3.881 17 C -0.149 4.149 18 C 0.171 3.829 19 N -0.622 5.622 20 C 0.112 3.888 21 C -0.153 4.153 22 C 0.111 3.889 23 N -0.743 5.743 24 C 0.707 3.293 25 O -0.579 6.579 26 C -0.150 4.150 27 C 0.083 3.917 28 C -0.081 4.081 29 C -0.179 4.179 30 H 0.285 0.715 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.413 0.587 45 H 0.095 0.905 46 H 0.067 0.933 47 H 0.133 0.867 48 H 0.058 0.942 49 H 0.108 0.892 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.597 -6.866 1.515 21.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.181 1.181 7 C -0.472 4.472 8 H 0.102 0.898 9 C 0.123 3.877 10 C -0.257 4.257 11 C -0.044 4.044 12 C -0.281 4.281 13 C 0.374 3.626 14 O -0.454 6.454 15 N -0.348 5.348 16 C -0.005 4.005 17 C -0.188 4.188 18 C 0.068 3.932 19 N -0.359 5.359 20 C -0.011 4.011 21 C -0.192 4.192 22 C -0.014 4.014 23 N -0.402 5.402 24 C 0.408 3.592 25 O -0.457 6.457 26 C -0.189 4.189 27 C -0.040 4.040 28 C -0.099 4.099 29 C -0.199 4.199 30 H 0.096 0.904 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.074 0.926 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.082 0.918 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.112 0.888 42 H 0.099 0.901 43 H 0.080 0.920 44 H 0.250 0.750 45 H 0.114 0.886 46 H 0.085 0.915 47 H 0.151 0.849 48 H 0.076 0.924 49 H 0.126 0.874 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -19.912 -7.223 1.602 21.242 hybrid contribution -0.175 0.706 -0.409 0.835 sum -20.087 -6.517 1.193 21.152 Atomic orbital electron populations 1.69760 1.07911 1.29885 1.31888 1.26076 0.94749 1.01800 0.91862 0.86259 0.80965 0.80104 0.79313 1.19312 1.19777 1.18111 1.19805 0.99193 0.91504 1.36721 0.89845 1.17750 0.90483 0.92042 0.87444 1.20672 1.04532 0.92514 1.07970 1.20266 0.92770 0.97068 0.94310 1.18839 1.03758 0.91104 1.14357 1.18672 0.80405 0.88689 0.74864 1.90622 1.64591 1.36156 1.53992 1.47961 1.07049 1.09734 1.70030 1.21358 0.94158 0.88917 0.96065 1.22379 0.96706 0.96821 1.02886 1.20970 0.85382 0.95628 0.91247 1.47051 1.06704 1.74079 1.08075 1.21615 0.81270 1.01518 0.96705 1.22246 1.00685 1.00357 0.95890 1.21476 0.82592 0.99206 0.98137 1.45037 1.05285 1.77206 1.12641 1.15500 0.84664 0.78021 0.80981 1.90973 1.18381 1.58690 1.77635 1.22405 0.97259 0.96685 1.02538 1.22705 0.93544 0.89385 0.98365 1.20835 0.97542 0.92357 0.99181 1.21007 0.99863 0.97002 1.01994 0.90366 0.88479 0.88592 0.92626 0.89166 0.88719 0.91780 0.89863 0.91933 0.90000 0.90299 0.88762 0.90135 0.92023 0.75002 0.88642 0.91465 0.84936 0.92418 0.87400 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.53 10.95 55.56 0.61 -17.92 16 2 C 0.08 1.80 5.11 -17.31 -0.09 1.71 16 3 Si 0.91 17.51 29.61 -169.99 -5.03 12.48 16 4 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 5 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 6 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 7 C -0.44 -11.28 9.04 -37.75 -0.34 -11.62 16 8 H 0.08 2.03 7.93 -52.49 -0.42 1.62 16 9 C 0.13 3.28 5.59 -106.81 -0.60 2.68 16 10 C -0.24 -5.95 9.73 -39.27 -0.38 -6.33 16 11 C -0.02 -0.62 9.53 -39.61 -0.38 -0.99 16 12 C -0.28 -6.61 5.55 -104.73 -0.58 -7.19 16 13 C 0.58 13.23 7.44 -12.42 -0.09 13.13 16 14 O -0.57 -14.48 16.17 5.30 0.09 -14.40 16 15 N -0.61 -11.43 2.98 -173.73 -0.52 -11.94 16 16 C 0.12 1.85 6.42 -3.71 -0.02 1.83 16 17 C -0.15 -2.11 5.25 -26.61 -0.14 -2.25 16 18 C 0.17 2.13 2.48 -67.89 -0.17 1.97 16 19 N -0.62 -6.94 2.77 -171.95 -0.48 -7.41 16 20 C 0.11 0.77 6.47 -3.85 -0.02 0.75 16 21 C -0.15 -0.80 6.21 -26.35 -0.16 -0.96 16 22 C 0.11 0.62 7.20 -3.98 -0.03 0.59 16 23 N -0.74 -7.12 5.58 -65.52 -0.37 -7.48 16 24 C 0.71 9.51 7.61 -88.06 -0.67 8.84 16 25 O -0.58 -10.51 12.98 5.29 0.07 -10.44 16 26 C -0.15 -2.25 5.25 -26.61 -0.14 -2.39 16 27 C 0.08 1.35 4.90 -3.56 -0.02 1.33 16 28 C -0.08 -1.83 7.37 -39.61 -0.29 -2.13 16 29 C -0.18 -4.45 8.66 -39.27 -0.34 -4.79 16 30 H 0.29 6.15 8.29 -40.82 -0.34 5.81 16 31 H 0.10 2.28 8.06 -52.49 -0.42 1.85 16 32 H 0.10 2.29 7.95 -52.48 -0.42 1.87 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.56 7.01 -51.93 -0.36 1.20 16 35 H 0.09 1.70 6.08 -51.93 -0.32 1.39 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.85 7.76 -51.93 -0.40 0.44 16 38 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.47 7.90 -51.93 -0.41 0.06 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.41 3.65 8.88 -40.82 -0.36 3.28 16 45 H 0.10 1.82 6.12 -51.93 -0.32 1.50 16 46 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.13 2.49 3.56 -53.35 -0.19 2.30 16 48 H 0.06 0.79 8.13 -51.93 -0.42 0.37 16 49 H 0.11 2.13 5.29 -52.49 -0.28 1.85 16 50 H 0.12 3.01 6.08 -52.49 -0.32 2.69 16 LS Contribution 386.36 15.07 5.82 5.82 Total: -1.00 -32.66 386.36 -11.43 -44.09 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -7.15 Total: 13.03 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -4.47 Total: -5.83 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: -0.75 Total: -44.76 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: 0.15 Total: -24.84 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.48 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.66 -11.43 -44.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332401326.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.996 kcal (2) G-P(sol) polarization free energy of solvation -32.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds