Wall clock time and date at job start Tue Mar 31 2020 05:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30466 * 125.96568 * 2 1 4 4 N 1.39935 * 108.93357 * 179.97438 * 3 2 1 5 5 C 1.40147 * 125.76741 * 180.02562 * 4 3 2 6 6 C 1.38873 * 120.05312 * 359.97438 * 5 4 3 7 7 C 1.38109 * 119.98302 * 180.02562 * 6 5 4 8 8 C 1.38272 * 120.08775 * 359.97438 * 7 6 5 9 9 C 1.38483 * 120.11200 * 0.02562 * 8 7 6 10 10 F 1.35102 * 119.99353 * 180.02562 * 9 8 7 11 11 C 1.38360 * 120.01516 * 359.72159 * 9 8 7 12 12 C 1.34570 * 108.46115 * 359.72993 * 4 3 2 13 13 C 1.38131 * 107.36246 * 0.42679 * 12 4 3 14 14 C 1.47340 * 126.41401 * 179.84105 * 13 12 4 15 15 O 1.21629 * 120.00245 * 172.80563 * 14 13 12 16 16 N 1.34780 * 119.99843 * 352.80234 * 14 13 12 17 17 C 1.36977 * 119.99934 * 4.46239 * 16 14 13 18 18 H 1.07994 * 120.00912 * 301.49479 * 17 16 14 19 19 C 1.38987 * 119.99638 * 121.49357 * 17 16 14 20 20 N 1.31408 * 119.99986 * 354.08319 * 19 17 16 21 21 Si 1.86797 * 120.00030 * 174.08664 * 19 17 16 22 22 H 1.48500 * 109.47251 * 89.99458 * 21 19 17 23 23 H 1.48500 * 109.47300 * 210.00007 * 21 19 17 24 24 H 1.48506 * 109.46814 * 329.99942 * 21 19 17 25 25 C 1.46502 * 119.99964 * 184.46965 * 16 14 13 26 26 C 1.55231 * 110.47105 * 59.95222 * 25 16 14 27 27 C 1.54886 * 102.58897 * 203.39273 * 26 25 16 28 28 C 1.54269 * 104.31129 * 37.93647 * 27 26 25 29 29 C 1.53875 * 106.59711 * 336.31941 * 28 27 26 30 30 H 1.09002 * 109.46958 * 270.02835 * 1 2 3 31 31 H 1.09006 * 109.46630 * 30.02449 * 1 2 3 32 32 H 1.08995 * 109.47015 * 150.02442 * 1 2 3 33 33 H 1.07997 * 120.01707 * 0.02562 * 6 5 4 34 34 H 1.07994 * 119.96044 * 180.02562 * 7 6 5 35 35 H 1.07997 * 119.94359 * 180.02562 * 8 7 6 36 36 H 1.08001 * 120.04966 * 180.30643 * 11 9 8 37 37 H 1.07994 * 126.31822 * 180.28682 * 12 4 3 38 38 H 0.96999 * 120.00046 * 180.02562 * 20 19 17 39 39 H 1.08997 * 110.43328 * 182.60636 * 25 16 14 40 40 H 1.09003 * 110.89346 * 85.10163 * 26 25 16 41 41 H 1.09005 * 110.76752 * 321.63080 * 26 25 16 42 42 H 1.08994 * 110.49183 * 279.18760 * 27 26 25 43 43 H 1.09007 * 110.48423 * 156.67586 * 27 26 25 44 44 H 1.08999 * 110.03363 * 95.60693 * 28 27 26 45 45 H 1.08998 * 110.03209 * 216.98976 * 28 27 26 46 46 H 1.09002 * 110.02922 * 119.28714 * 29 28 27 47 47 H 1.08999 * 110.03549 * 240.66581 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2733 1.0559 0.0000 4 7 3.6113 0.6461 0.0006 5 6 4.7276 1.4934 0.0013 6 6 4.5548 2.8713 0.0009 7 6 5.6559 3.7050 0.0010 8 6 6.9307 3.1696 0.0021 9 6 7.1074 1.7961 0.0025 10 9 8.3541 1.2755 0.0041 11 6 6.0075 0.9568 0.0076 12 6 3.6448 -0.6992 0.0070 13 6 2.3372 -1.1442 0.0006 14 6 1.8911 -2.5485 0.0009 15 8 0.7103 -2.8115 0.1268 16 7 2.7917 -3.5416 -0.1384 17 6 4.1293 -3.2511 -0.1884 18 1 4.5104 -2.5905 -0.9531 19 6 4.9964 -3.8064 0.7451 20 7 4.5201 -4.5153 1.7439 21 14 6.8386 -3.5451 0.5802 22 1 7.2319 -2.3158 1.3146 23 1 7.5573 -4.7132 1.1496 24 1 7.1912 -3.3984 -0.8549 25 6 2.3398 -4.9317 -0.2366 26 6 1.4100 -5.1148 -1.4661 27 6 0.5848 -6.3679 -1.0816 28 6 0.3339 -6.2096 0.4323 29 6 1.4498 -5.2965 0.9696 30 1 -0.3633 0.0005 1.0277 31 1 -0.3633 0.8898 -0.5143 32 1 -0.3633 -0.8902 -0.5134 33 1 3.5597 3.2911 0.0005 34 1 5.5211 4.7765 0.0011 35 1 7.7901 3.8237 0.0026 36 1 6.1446 -0.1145 0.0130 37 1 4.5307 -1.3169 0.0134 38 1 5.1252 -4.9026 2.3956 39 1 3.1939 -5.6060 -0.2982 40 1 1.9917 -5.2976 -2.3696 41 1 0.7607 -4.2483 -1.5921 42 1 1.1542 -7.2756 -1.2811 43 1 -0.3599 -6.3841 -1.6252 44 1 -0.6395 -5.7500 0.6034 45 1 0.3785 -7.1824 0.9218 46 1 1.0179 -4.3937 1.4015 47 1 2.0362 -5.8257 1.7207 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413478134.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:21 Heat of formation + Delta-G solvation = 29.205181 kcal Electronic energy + Delta-G solvation = -32587.043164 eV Core-core repulsion = 28265.087849 eV Total energy + Delta-G solvation = -4321.955315 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 357.159 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.97910 -41.22653 -39.12548 -38.54928 -36.02122 -34.52629 -33.68154 -31.57452 -30.91034 -30.47171 -29.49515 -27.76987 -27.36929 -26.71497 -25.14915 -23.47328 -22.58898 -21.34367 -20.60648 -19.64835 -19.22369 -18.68323 -18.42818 -17.00883 -16.32521 -16.21610 -15.75161 -15.55390 -15.48668 -15.02001 -14.92527 -14.72184 -14.27582 -14.13171 -13.55115 -13.47718 -13.23113 -13.02976 -12.85815 -12.63286 -12.49243 -12.40024 -12.07908 -12.00804 -11.84887 -11.64977 -11.49517 -11.26576 -11.17594 -10.80786 -10.48079 -10.40720 -10.34802 -10.30187 -10.16352 -9.89564 -9.85612 -9.57158 -9.01067 -8.99746 -8.55380 -8.27927 -7.78269 -7.22883 -6.50208 -4.43222 0.76569 1.01805 2.36088 2.55828 2.78637 2.97583 3.08376 3.09228 3.56418 3.90957 4.13346 4.48990 4.53385 4.73819 4.78950 4.81124 4.92442 4.97446 5.16445 5.41449 5.43718 5.52027 5.56949 5.66608 5.78930 5.81518 5.91170 6.02313 6.10653 6.14072 6.20293 6.32956 6.34605 6.37722 6.40123 6.46265 6.47701 6.49327 6.60538 6.64688 6.69174 6.76165 6.91400 7.09545 7.15068 7.19850 7.39792 7.45661 7.47371 8.03118 8.06363 8.27391 8.89749 9.49314 9.92660 10.52096 Molecular weight = 357.16amu Principal moments of inertia in cm(-1) A = 0.011238 B = 0.004014 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.858043 B = 6973.409642 C = 9046.437600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.132 3.868 3 N -0.318 5.318 4 N -0.338 5.338 5 C 0.211 3.789 6 C -0.138 4.138 7 C -0.067 4.067 8 C -0.176 4.176 9 C 0.129 3.871 10 F -0.134 7.134 11 C -0.186 4.186 12 C 0.101 3.899 13 C -0.240 4.240 14 C 0.563 3.437 15 O -0.588 6.588 16 N -0.434 5.434 17 C -0.360 4.360 18 H 0.083 0.917 19 C 0.059 3.941 20 N -0.841 5.841 21 Si 0.889 3.111 22 H -0.270 1.270 23 H -0.275 1.275 24 H -0.262 1.262 25 C 0.172 3.828 26 C -0.140 4.140 27 C -0.117 4.117 28 C -0.116 4.116 29 C -0.121 4.121 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.145 0.855 37 H 0.218 0.782 38 H 0.272 0.728 39 H 0.081 0.919 40 H 0.051 0.949 41 H 0.077 0.923 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.047 0.953 46 H 0.080 0.920 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.633 8.773 -3.119 9.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.037 4.037 3 N -0.138 5.138 4 N -0.111 5.111 5 C 0.117 3.883 6 C -0.158 4.158 7 C -0.086 4.086 8 C -0.195 4.195 9 C 0.109 3.891 10 F -0.112 7.112 11 C -0.207 4.207 12 C -0.041 4.041 13 C -0.253 4.253 14 C 0.353 3.647 15 O -0.474 6.474 16 N -0.151 5.151 17 C -0.488 4.488 18 H 0.100 0.900 19 C -0.152 4.152 20 N -0.473 5.473 21 Si 0.713 3.287 22 H -0.195 1.195 23 H -0.200 1.200 24 H -0.186 1.186 25 C 0.068 3.932 26 C -0.179 4.179 27 C -0.155 4.155 28 C -0.155 4.155 29 C -0.159 4.159 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.162 0.838 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.163 0.837 37 H 0.234 0.766 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.099 0.901 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.246 9.712 -2.871 10.204 hybrid contribution 1.562 -1.084 0.146 1.907 sum 2.807 8.628 -2.724 9.473 Atomic orbital electron populations 1.20256 0.85814 1.03394 1.03222 1.22625 0.97082 0.89416 0.94572 1.76989 0.85375 1.22980 1.28408 1.45733 1.04049 1.04934 1.56371 1.17188 0.83648 0.89701 0.97783 1.20964 1.00787 0.90692 1.03393 1.20850 0.90736 1.00114 0.96862 1.21119 0.99039 0.92986 1.06365 1.17232 0.79051 0.91486 1.01298 1.91526 1.38573 1.87410 1.93723 1.20822 0.90039 1.01692 1.08171 1.25264 1.02327 0.81940 0.94543 1.20526 0.91288 0.95435 1.18065 1.17447 0.85477 0.83504 0.78271 1.90558 1.17516 1.84183 1.55149 1.42979 1.05055 1.03437 1.63657 1.19208 0.82700 1.33279 1.13620 0.89972 1.25662 0.99701 0.95648 0.94155 1.69865 1.35804 1.30396 1.11255 0.86538 0.83453 0.79145 0.79525 1.19490 1.20014 1.18645 1.21637 0.95105 0.84160 0.92269 1.22973 0.98634 0.98126 0.98124 1.22204 0.99021 0.97806 0.96455 1.22037 0.99538 0.98668 0.95207 1.22298 0.95484 0.99839 0.98295 0.90500 0.91826 0.88562 0.83844 0.84269 0.84440 0.83692 0.76623 0.91745 0.90062 0.93000 0.90411 0.92665 0.92828 0.92622 0.93428 0.90119 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.12 9.86 36.01 0.36 -0.77 16 2 C 0.13 2.60 7.26 -81.98 -0.60 2.01 16 3 N -0.32 -6.07 11.77 33.91 0.40 -5.67 16 4 N -0.34 -6.33 3.77 -10.19 -0.04 -6.36 16 5 C 0.21 3.37 6.68 -83.62 -0.56 2.82 16 6 C -0.14 -1.82 9.65 -39.39 -0.38 -2.20 16 7 C -0.07 -0.69 10.04 -39.62 -0.40 -1.08 16 8 C -0.18 -1.89 10.02 -39.48 -0.40 -2.29 16 9 C 0.13 1.75 7.30 -39.45 -0.29 1.46 16 10 F -0.13 -1.89 17.27 2.25 0.04 -1.85 16 11 C -0.19 -2.84 9.42 -39.33 -0.37 -3.21 16 12 C 0.10 2.06 9.11 -16.39 -0.15 1.91 16 13 C -0.24 -5.26 6.04 -105.05 -0.63 -5.89 16 14 C 0.56 13.31 6.76 -12.56 -0.08 13.23 16 15 O -0.59 -14.18 11.36 5.25 0.06 -14.12 16 16 N -0.43 -10.24 2.39 -107.00 -0.26 -10.50 16 17 C -0.36 -8.39 6.01 -14.98 -0.09 -8.48 16 18 H 0.08 1.85 6.08 -52.49 -0.32 1.53 16 19 C 0.06 1.37 5.16 -17.46 -0.09 1.28 16 20 N -0.84 -20.87 12.76 55.50 0.71 -20.16 16 21 Si 0.89 17.81 29.44 -169.99 -5.00 12.80 16 22 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 23 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 25 C 0.17 3.83 2.44 -66.08 -0.16 3.67 16 26 C -0.14 -2.75 6.30 -24.55 -0.15 -2.91 16 27 C -0.12 -1.99 6.82 -25.07 -0.17 -2.16 16 28 C -0.12 -2.11 6.80 -25.61 -0.17 -2.29 16 29 C -0.12 -2.63 6.03 -25.61 -0.15 -2.78 16 30 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.10 1.68 6.71 -51.93 -0.35 1.33 16 33 H 0.14 1.85 7.68 -52.49 -0.40 1.45 16 34 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.15 2.30 6.71 -52.49 -0.35 1.95 16 37 H 0.22 4.41 3.55 -52.49 -0.19 4.22 16 38 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 39 H 0.08 1.91 7.59 -51.93 -0.39 1.51 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.08 1.66 6.33 -51.93 -0.33 1.33 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 46 H 0.08 1.97 5.74 -51.93 -0.30 1.67 16 47 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 381.72 15.07 5.75 5.75 Total: -1.00 -27.04 381.72 -8.83 -35.87 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -5.99 Total: 11.92 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -4.49 Total: -7.68 kcal Atomic # 7 Polarization: -43.51 SS G_CDS: 0.81 Total: -42.69 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.06 Total: -14.12 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.00 Total: 12.80 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -27.04 -8.83 -35.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413478134.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.073 kcal (2) G-P(sol) polarization free energy of solvation -27.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds