Wall clock time and date at job start Tue Mar 31 2020 05:13:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.61083 * 2 1 4 4 C 1.53370 * 109.60875 * 120.34208 * 2 1 3 5 5 N 1.46963 * 108.63532 * 70.31686 * 4 2 1 6 6 C 1.34779 * 120.59597 * 235.19775 * 5 4 2 7 7 O 1.21588 * 119.99644 * 5.04212 * 6 5 4 8 8 N 1.34773 * 120.00197 * 185.02814 * 6 5 4 9 9 C 1.46498 * 119.99970 * 175.02180 * 8 6 5 10 10 C 1.50708 * 109.46795 * 180.02562 * 9 8 6 11 11 C 1.33988 * 124.92390 * 90.02773 * 10 9 8 12 12 C 1.46783 * 106.18607 * 179.97438 * 11 10 9 13 13 C 1.39406 * 134.36737 * 179.97438 * 12 11 10 14 14 C 1.36737 * 119.71415 * 180.02562 * 13 12 11 15 15 C 1.38743 * 120.41871 * 0.26150 * 14 13 12 16 16 C 1.37849 * 120.68135 * 359.51082 * 15 14 13 17 17 C 1.38936 * 119.82173 * 0.44960 * 16 15 14 18 18 O 1.34450 * 124.92291 * 270.02268 * 10 9 8 19 19 C 1.46962 * 118.81099 * 55.48200 * 5 4 2 20 20 C 1.53812 * 108.39819 * 304.48304 * 19 5 4 21 21 H 1.08999 * 109.73651 * 289.84794 * 20 19 5 22 22 C 1.53003 * 109.53372 * 169.30550 * 20 19 5 23 23 N 1.46960 * 108.57763 * 49.63465 * 20 19 5 24 24 C 1.36937 * 120.59054 * 124.67619 * 23 20 19 25 25 H 1.08006 * 120.00071 * 323.47844 * 24 23 20 26 26 C 1.38818 * 120.00198 * 143.48905 * 24 23 20 27 27 N 1.31618 * 119.99516 * 359.24477 * 26 24 23 28 28 Si 1.86800 * 119.99948 * 179.25253 * 26 24 23 29 29 H 1.48499 * 109.47260 * 59.99872 * 28 26 24 30 30 H 1.48499 * 109.46995 * 179.97438 * 28 26 24 31 31 H 1.48497 * 109.46818 * 299.99492 * 28 26 24 32 32 H 1.08998 * 109.47172 * 299.65966 * 1 2 3 33 33 H 1.09007 * 109.47214 * 59.66107 * 1 2 3 34 34 H 1.09007 * 109.47314 * 179.65784 * 1 2 3 35 35 H 1.09007 * 109.60941 * 310.57420 * 4 2 1 36 36 H 1.08993 * 109.61125 * 190.06628 * 4 2 1 37 37 H 0.97002 * 119.99756 * 355.03503 * 8 6 5 38 38 H 1.08998 * 109.46693 * 60.00972 * 9 8 6 39 39 H 1.08998 * 109.47528 * 300.00247 * 9 8 6 40 40 H 1.08006 * 126.90630 * 0.02562 * 11 10 9 41 41 H 1.08003 * 120.14672 * 0.02989 * 13 12 11 42 42 H 1.08001 * 119.79295 * 179.97438 * 14 13 12 43 43 H 1.07997 * 119.66115 * 179.72672 * 15 14 13 44 44 H 1.08002 * 120.09147 * 180.23975 * 16 15 14 45 45 H 1.09005 * 109.61086 * 64.26327 * 19 5 4 46 46 H 1.09004 * 109.61230 * 184.77221 * 19 5 4 47 47 H 1.08998 * 109.46827 * 296.33100 * 22 20 19 48 48 H 1.08999 * 109.47338 * 56.33277 * 22 20 19 49 49 H 1.08999 * 109.46749 * 176.33616 * 22 20 19 50 50 H 0.97005 * 119.99573 * 185.00367 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0447 -0.7298 1.2469 5 7 1.7604 -2.1644 1.1021 6 6 1.0605 -2.8238 2.0465 7 8 0.5797 -2.2150 2.9827 8 7 0.8933 -4.1578 1.9530 9 6 0.2275 -4.8901 3.0331 10 6 0.1691 -6.3553 2.6850 11 6 1.1089 -7.2567 3.0005 12 6 0.6386 -8.5414 2.4685 13 6 1.1470 -9.8394 2.4640 14 6 0.4385 -10.8427 1.8630 15 6 -0.7790 -10.5755 1.2538 16 6 -1.2997 -9.2991 1.2524 17 6 -0.5963 -8.2653 1.8581 18 8 -0.8336 -6.9473 2.0129 19 6 2.2585 -2.8686 -0.0878 20 6 1.7390 -2.1376 -1.3374 21 1 0.6639 -2.2897 -1.4326 22 6 2.4498 -2.6791 -2.5794 23 7 2.0232 -0.7030 -1.1926 24 6 2.7344 -0.0331 -2.1521 25 1 3.5503 -0.5247 -2.6612 26 6 2.4069 1.2778 -2.4703 27 7 1.4033 1.8719 -1.8602 28 14 3.3904 2.1985 -3.7643 29 1 3.2968 1.4805 -5.0608 30 1 2.8437 3.5705 -3.9182 31 1 4.8123 2.2761 -3.3429 32 1 -0.3633 0.5085 0.8930 33 1 -0.3634 0.5191 -0.8870 34 1 -0.3634 -1.0277 -0.0061 35 1 1.5383 -0.3440 2.1317 36 1 3.1197 -0.5777 1.3421 37 1 1.2140 -4.6331 1.1705 38 1 -0.7845 -4.5064 3.1621 39 1 0.7867 -4.7592 3.9595 40 1 2.0273 -7.0748 3.5389 41 1 2.0963 -10.0518 2.9333 42 1 0.8314 -11.8488 1.8584 43 1 -1.3262 -11.3763 0.7789 44 1 -2.2501 -9.1025 0.7787 45 1 3.3485 -2.8652 -0.0854 46 1 1.8934 -3.8957 -0.0847 47 1 3.5151 -2.4581 -2.5136 48 1 2.3055 -3.7579 -2.6392 49 1 2.0351 -2.2071 -3.4701 50 1 1.1282 2.7613 -2.1328 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864095471.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:46 Heat of formation + Delta-G solvation = 43.812657 kcal Electronic energy + Delta-G solvation = -32113.738827 eV Core-core repulsion = 27915.877245 eV Total energy + Delta-G solvation = -4197.861583 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.77326 -39.99608 -38.24770 -37.48735 -35.06325 -34.01109 -33.02502 -32.55270 -31.33387 -30.74239 -30.05671 -27.91158 -26.77441 -26.21287 -24.89505 -23.60987 -23.20995 -22.12162 -21.38501 -20.85883 -20.23000 -18.78684 -18.13000 -17.67381 -16.97587 -16.63467 -16.08435 -15.85482 -15.54835 -15.27968 -15.06858 -14.51140 -14.22945 -14.03441 -13.97186 -13.79958 -13.64976 -13.42174 -13.24206 -13.04519 -12.70690 -12.59029 -12.45789 -12.07710 -11.93830 -11.69493 -11.49284 -11.26389 -11.23211 -10.91783 -10.81925 -10.63508 -10.55819 -10.49619 -10.12324 -10.01361 -9.84689 -9.75181 -9.43298 -9.08561 -8.95776 -8.52647 -8.43480 -8.05670 -6.49085 -5.82059 -3.35410 0.51998 1.03207 1.89685 2.33861 3.10260 3.35499 3.38755 3.41621 3.42294 3.53734 3.98504 4.20592 4.32311 4.44566 4.59880 4.75444 4.83433 4.93249 4.97404 5.16625 5.18229 5.35825 5.37328 5.43858 5.54592 5.62690 5.65312 5.84394 5.86061 5.91819 6.03671 6.08437 6.09534 6.17327 6.27858 6.31274 6.33487 6.37908 6.44916 6.53534 6.68840 6.83857 6.88289 6.91014 6.98760 7.07547 7.11331 7.29863 7.69091 7.74166 7.84344 8.27296 8.49996 8.90848 9.21340 9.78483 10.39421 11.25253 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.017416 B = 0.002234 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.355558 B =12532.512902 C =13393.013276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.178 3.822 3 H 0.112 0.888 4 C 0.108 3.892 5 N -0.609 5.609 6 C 0.707 3.293 7 O -0.597 6.597 8 N -0.753 5.753 9 C 0.217 3.783 10 C 0.021 3.979 11 C -0.182 4.182 12 C -0.134 4.134 13 C -0.069 4.069 14 C -0.138 4.138 15 C -0.093 4.093 16 C -0.107 4.107 17 C 0.057 3.943 18 O -0.186 6.186 19 C 0.099 3.901 20 C 0.156 3.844 21 H 0.031 0.969 22 C -0.134 4.134 23 N -0.581 5.581 24 C -0.254 4.254 25 H 0.066 0.934 26 C 0.013 3.987 27 N -0.898 5.898 28 Si 0.900 3.100 29 H -0.284 1.284 30 H -0.291 1.291 31 H -0.284 1.284 32 H 0.028 0.972 33 H 0.071 0.929 34 H 0.019 0.981 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.398 0.602 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.162 0.838 41 H 0.128 0.872 42 H 0.129 0.871 43 H 0.135 0.865 44 H 0.133 0.867 45 H 0.065 0.935 46 H 0.059 0.941 47 H 0.058 0.942 48 H 0.038 0.962 49 H 0.063 0.937 50 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.159 -22.944 7.668 24.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.072 3.928 3 H 0.129 0.871 4 C -0.016 4.016 5 N -0.344 5.344 6 C 0.409 3.591 7 O -0.477 6.477 8 N -0.413 5.413 9 C 0.093 3.907 10 C -0.027 4.027 11 C -0.202 4.202 12 C -0.135 4.135 13 C -0.087 4.087 14 C -0.156 4.156 15 C -0.111 4.111 16 C -0.125 4.125 17 C 0.009 3.991 18 O -0.088 6.088 19 C -0.026 4.026 20 C 0.048 3.952 21 H 0.048 0.952 22 C -0.192 4.192 23 N -0.304 5.304 24 C -0.383 4.383 25 H 0.084 0.916 26 C -0.186 4.186 27 N -0.542 5.542 28 Si 0.729 3.271 29 H -0.210 1.210 30 H -0.217 1.217 31 H -0.210 1.210 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.038 0.962 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.235 0.765 38 H 0.105 0.895 39 H 0.118 0.882 40 H 0.179 0.821 41 H 0.146 0.854 42 H 0.147 0.853 43 H 0.153 0.847 44 H 0.151 0.849 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.077 0.923 48 H 0.057 0.943 49 H 0.082 0.918 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.749 -22.106 8.270 23.667 hybrid contribution 0.629 0.111 -1.130 1.298 sum -1.120 -21.995 7.140 23.152 Atomic orbital electron populations 1.21946 0.98210 0.98362 1.00833 1.20834 0.92349 0.97095 0.82569 0.87073 1.22461 0.99622 0.77893 1.01590 1.47200 1.55906 1.10800 1.20509 1.15769 0.79555 0.80801 0.83004 1.90878 1.54672 1.66810 1.35300 1.45271 1.65552 1.06865 1.23608 1.19473 1.00090 0.80648 0.90498 1.22320 0.87649 0.95424 0.97280 1.22369 1.01271 0.90433 1.06132 1.19972 0.95906 0.94835 1.02789 1.20311 0.99678 0.90317 0.98366 1.20796 0.95596 0.99414 0.99820 1.20955 0.95963 0.95352 0.98840 1.19996 1.00756 0.89858 1.01931 1.19671 0.95889 0.82747 1.00760 1.84008 1.42692 1.19333 1.62719 1.22408 0.99002 0.94200 0.86992 1.20851 0.96341 0.86827 0.91197 0.95157 1.21751 1.01172 0.97757 0.98548 1.44036 1.63104 1.02798 1.20420 1.19049 1.09358 0.95158 1.14785 0.91633 1.25324 0.96756 0.98477 0.98071 1.69861 1.28168 1.14961 1.41225 0.86430 0.79564 0.78967 0.82101 1.20998 1.21690 1.20980 0.95318 0.90979 0.96180 0.90063 0.92580 0.76522 0.89542 0.88213 0.82076 0.85444 0.85314 0.84733 0.84918 0.91643 0.92322 0.92345 0.94315 0.91784 0.93397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.93 37.16 0.33 -2.77 16 2 C 0.18 4.10 2.32 -67.49 -0.16 3.94 16 3 H 0.11 2.88 6.10 -51.93 -0.32 2.57 16 4 C 0.11 2.19 5.97 -3.60 -0.02 2.16 16 5 N -0.61 -11.14 2.60 -177.94 -0.46 -11.60 16 6 C 0.71 12.66 8.29 -86.92 -0.72 11.94 16 7 O -0.60 -12.53 15.76 5.29 0.08 -12.45 16 8 N -0.75 -10.44 5.46 -66.41 -0.36 -10.80 16 9 C 0.22 2.56 6.18 -5.19 -0.03 2.52 16 10 C 0.02 0.24 6.60 -35.80 -0.24 0.00 16 11 C -0.18 -1.82 11.01 -37.62 -0.41 -2.23 16 12 C -0.13 -1.40 6.40 -105.16 -0.67 -2.08 16 13 C -0.07 -0.57 10.05 -39.69 -0.40 -0.97 16 14 C -0.14 -0.97 9.98 -39.94 -0.40 -1.37 16 15 C -0.09 -0.66 10.01 -39.54 -0.40 -1.06 16 16 C -0.11 -0.96 10.07 -39.47 -0.40 -1.36 16 17 C 0.06 0.64 7.42 -38.48 -0.29 0.36 16 18 O -0.19 -2.32 10.58 3.92 0.04 -2.28 16 19 C 0.10 1.64 5.90 -3.37 -0.02 1.62 16 20 C 0.16 3.04 3.24 -67.26 -0.22 2.82 16 21 H 0.03 0.65 7.38 -51.93 -0.38 0.27 16 22 C -0.13 -2.33 8.07 37.16 0.30 -2.03 16 23 N -0.58 -13.46 2.67 -156.77 -0.42 -13.88 16 24 C -0.25 -6.41 8.48 -15.06 -0.13 -6.53 16 25 H 0.07 1.62 6.30 -52.48 -0.33 1.29 16 26 C 0.01 0.33 5.23 -17.43 -0.09 0.24 16 27 N -0.90 -24.43 9.68 55.49 0.54 -23.89 16 28 Si 0.90 20.77 29.56 -169.99 -5.02 15.74 16 29 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 30 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 31 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 32 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 1.84 7.08 -51.93 -0.37 1.47 16 34 H 0.02 0.44 7.00 -51.93 -0.36 0.08 16 35 H 0.08 1.68 6.96 -51.93 -0.36 1.32 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.40 4.99 5.93 -40.82 -0.24 4.75 16 38 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 39 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.16 1.26 8.06 -52.48 -0.42 0.84 16 41 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 42 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 43 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 44 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 45 H 0.07 1.07 8.12 -51.93 -0.42 0.64 16 46 H 0.06 0.80 5.61 -51.93 -0.29 0.51 16 47 H 0.06 1.02 7.06 -51.93 -0.37 0.66 16 48 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.06 1.21 7.90 -51.93 -0.41 0.80 16 50 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 LS Contribution 396.53 15.07 5.98 5.98 Total: -1.00 -30.61 396.53 -10.80 -41.42 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: -7.22 Total: 6.56 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: -3.96 Total: 5.21 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: -0.71 Total: -60.17 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: 0.12 Total: -14.73 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.61 -10.80 -41.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864095471.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.229 kcal (2) G-P(sol) polarization free energy of solvation -30.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds