Wall clock time and date at job start Tue Mar 31 2020 05:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.61083 * 2 1 4 4 C 1.53370 * 109.60875 * 120.34208 * 2 1 3 5 5 N 1.46963 * 108.63532 * 70.31686 * 4 2 1 6 6 C 1.34779 * 120.59597 * 235.19775 * 5 4 2 7 7 O 1.21588 * 119.99644 * 5.04212 * 6 5 4 8 8 N 1.34773 * 120.00197 * 185.02814 * 6 5 4 9 9 C 1.46498 * 119.99970 * 175.02180 * 8 6 5 10 10 C 1.50708 * 109.46795 * 180.02562 * 9 8 6 11 11 C 1.33988 * 124.92390 * 90.02773 * 10 9 8 12 12 C 1.46783 * 106.18607 * 179.97438 * 11 10 9 13 13 C 1.39406 * 134.36737 * 179.97438 * 12 11 10 14 14 C 1.36737 * 119.71415 * 180.02562 * 13 12 11 15 15 C 1.38743 * 120.41871 * 0.26150 * 14 13 12 16 16 C 1.37849 * 120.68135 * 359.51082 * 15 14 13 17 17 C 1.38936 * 119.82173 * 0.44960 * 16 15 14 18 18 O 1.34450 * 124.92291 * 270.02268 * 10 9 8 19 19 C 1.46962 * 118.81099 * 55.48200 * 5 4 2 20 20 C 1.53812 * 108.39819 * 304.48304 * 19 5 4 21 21 H 1.08999 * 109.73651 * 289.84794 * 20 19 5 22 22 C 1.53003 * 109.53372 * 169.30550 * 20 19 5 23 23 N 1.46960 * 108.57763 * 49.63465 * 20 19 5 24 24 C 1.36937 * 120.59054 * 124.67619 * 23 20 19 25 25 H 1.08006 * 120.00071 * 323.47844 * 24 23 20 26 26 C 1.38818 * 120.00198 * 143.48905 * 24 23 20 27 27 N 1.31618 * 119.99516 * 359.24477 * 26 24 23 28 28 Si 1.86800 * 119.99948 * 179.25253 * 26 24 23 29 29 H 1.48499 * 109.47260 * 59.99872 * 28 26 24 30 30 H 1.48499 * 109.46995 * 179.97438 * 28 26 24 31 31 H 1.48497 * 109.46818 * 299.99492 * 28 26 24 32 32 H 1.08998 * 109.47172 * 299.65966 * 1 2 3 33 33 H 1.09007 * 109.47214 * 59.66107 * 1 2 3 34 34 H 1.09007 * 109.47314 * 179.65784 * 1 2 3 35 35 H 1.09007 * 109.60941 * 310.57420 * 4 2 1 36 36 H 1.08993 * 109.61125 * 190.06628 * 4 2 1 37 37 H 0.97002 * 119.99756 * 355.03503 * 8 6 5 38 38 H 1.08998 * 109.46693 * 60.00972 * 9 8 6 39 39 H 1.08998 * 109.47528 * 300.00247 * 9 8 6 40 40 H 1.08006 * 126.90630 * 0.02562 * 11 10 9 41 41 H 1.08003 * 120.14672 * 0.02989 * 13 12 11 42 42 H 1.08001 * 119.79295 * 179.97438 * 14 13 12 43 43 H 1.07997 * 119.66115 * 179.72672 * 15 14 13 44 44 H 1.08002 * 120.09147 * 180.23975 * 16 15 14 45 45 H 1.09005 * 109.61086 * 64.26327 * 19 5 4 46 46 H 1.09004 * 109.61230 * 184.77221 * 19 5 4 47 47 H 1.08998 * 109.46827 * 296.33100 * 22 20 19 48 48 H 1.08999 * 109.47338 * 56.33277 * 22 20 19 49 49 H 1.08999 * 109.46749 * 176.33616 * 22 20 19 50 50 H 0.97005 * 119.99573 * 185.00367 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0447 -0.7298 1.2469 5 7 1.7604 -2.1644 1.1021 6 6 1.0605 -2.8238 2.0465 7 8 0.5797 -2.2150 2.9827 8 7 0.8933 -4.1578 1.9530 9 6 0.2275 -4.8901 3.0331 10 6 0.1691 -6.3553 2.6850 11 6 1.1089 -7.2567 3.0005 12 6 0.6386 -8.5414 2.4685 13 6 1.1470 -9.8394 2.4640 14 6 0.4385 -10.8427 1.8630 15 6 -0.7790 -10.5755 1.2538 16 6 -1.2997 -9.2991 1.2524 17 6 -0.5963 -8.2653 1.8581 18 8 -0.8336 -6.9473 2.0129 19 6 2.2585 -2.8686 -0.0878 20 6 1.7390 -2.1376 -1.3374 21 1 0.6639 -2.2897 -1.4326 22 6 2.4498 -2.6791 -2.5794 23 7 2.0232 -0.7030 -1.1926 24 6 2.7344 -0.0331 -2.1521 25 1 3.5503 -0.5247 -2.6612 26 6 2.4069 1.2778 -2.4703 27 7 1.4033 1.8719 -1.8602 28 14 3.3904 2.1985 -3.7643 29 1 3.2968 1.4805 -5.0608 30 1 2.8437 3.5705 -3.9182 31 1 4.8123 2.2761 -3.3429 32 1 -0.3633 0.5085 0.8930 33 1 -0.3634 0.5191 -0.8870 34 1 -0.3634 -1.0277 -0.0061 35 1 1.5383 -0.3440 2.1317 36 1 3.1197 -0.5777 1.3421 37 1 1.2140 -4.6331 1.1705 38 1 -0.7845 -4.5064 3.1621 39 1 0.7867 -4.7592 3.9595 40 1 2.0273 -7.0748 3.5389 41 1 2.0963 -10.0518 2.9333 42 1 0.8314 -11.8488 1.8584 43 1 -1.3262 -11.3763 0.7789 44 1 -2.2501 -9.1025 0.7787 45 1 3.3485 -2.8652 -0.0854 46 1 1.8934 -3.8957 -0.0847 47 1 3.5151 -2.4581 -2.5136 48 1 2.3055 -3.7579 -2.6392 49 1 2.0351 -2.2071 -3.4701 50 1 1.1282 2.7613 -2.1328 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864095471.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:45 Heat of formation + Delta-G solvation = 27.380066 kcal Electronic energy + Delta-G solvation = -32114.451398 eV Core-core repulsion = 27915.877245 eV Total energy + Delta-G solvation = -4198.574153 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.51756 -41.43344 -39.15424 -38.80367 -36.25761 -35.66495 -34.26585 -33.77861 -33.05955 -31.37028 -30.98985 -29.70461 -27.99701 -27.56493 -26.39642 -25.35433 -23.91273 -22.83928 -22.52934 -22.07715 -21.68120 -20.40807 -19.51807 -18.35157 -17.86469 -17.85648 -17.46007 -17.03601 -16.92483 -16.60709 -16.26437 -15.80684 -15.56035 -15.31152 -15.14999 -15.10270 -14.85705 -14.72216 -14.44581 -14.08411 -13.98113 -13.59697 -13.45664 -13.32896 -13.22620 -13.02697 -12.88782 -12.74226 -12.72945 -12.50928 -12.34025 -12.25769 -11.97865 -11.86813 -11.74206 -11.54722 -11.50778 -11.23718 -11.05411 -10.39854 -10.33992 -9.61995 -9.56924 -9.21445 -8.35140 -7.78784 -5.33328 -0.15496 0.38949 1.10606 1.51650 1.52257 1.57352 1.58182 1.87523 2.12431 2.55237 2.76984 2.93899 3.22682 3.38428 3.55812 3.68712 4.00581 4.07554 4.15021 4.15547 4.21950 4.22891 4.30675 4.39747 4.46686 4.50076 4.56156 4.64491 4.69046 4.73374 4.75301 4.85343 4.88496 4.92726 4.98273 5.13593 5.19545 5.20008 5.30826 5.33865 5.35732 5.40416 5.44601 5.51920 5.57486 5.74641 5.76439 5.79307 5.82943 6.02668 6.17193 6.54846 6.93264 7.26038 7.50927 7.91111 8.47730 9.26376 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.017416 B = 0.002234 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.355558 B =12532.512902 C =13393.013276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.181 3.819 3 H 0.079 0.921 4 C 0.122 3.878 5 N -0.613 5.613 6 C 0.706 3.294 7 O -0.631 6.631 8 N -0.737 5.737 9 C 0.221 3.779 10 C 0.002 3.998 11 C -0.167 4.167 12 C -0.157 4.157 13 C -0.075 4.075 14 C -0.137 4.137 15 C -0.085 4.085 16 C -0.126 4.126 17 C 0.029 3.971 18 O -0.210 6.210 19 C 0.108 3.892 20 C 0.149 3.851 21 H 0.012 0.988 22 C -0.125 4.125 23 N -0.594 5.594 24 C -0.251 4.251 25 H 0.073 0.927 26 C -0.041 4.041 27 N -0.925 5.925 28 Si 0.958 3.042 29 H -0.279 1.279 30 H -0.302 1.302 31 H -0.278 1.278 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.018 0.982 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.406 0.594 38 H 0.074 0.926 39 H 0.114 0.886 40 H 0.183 0.817 41 H 0.149 0.851 42 H 0.160 0.840 43 H 0.165 0.835 44 H 0.141 0.859 45 H 0.076 0.924 46 H 0.094 0.906 47 H 0.057 0.943 48 H 0.078 0.922 49 H 0.041 0.959 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.310 -26.776 7.619 27.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.073 3.927 3 H 0.097 0.903 4 C -0.003 4.003 5 N -0.348 5.348 6 C 0.408 3.592 7 O -0.513 6.513 8 N -0.396 5.396 9 C 0.098 3.902 10 C -0.045 4.045 11 C -0.187 4.187 12 C -0.158 4.158 13 C -0.093 4.093 14 C -0.154 4.154 15 C -0.103 4.103 16 C -0.145 4.145 17 C -0.018 4.018 18 O -0.112 6.112 19 C -0.016 4.016 20 C 0.042 3.958 21 H 0.030 0.970 22 C -0.183 4.183 23 N -0.318 5.318 24 C -0.381 4.381 25 H 0.091 0.909 26 C -0.236 4.236 27 N -0.571 5.571 28 Si 0.787 3.213 29 H -0.205 1.205 30 H -0.229 1.229 31 H -0.204 1.204 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.037 0.963 35 H 0.092 0.908 36 H 0.080 0.920 37 H 0.245 0.755 38 H 0.092 0.908 39 H 0.131 0.869 40 H 0.200 0.800 41 H 0.166 0.834 42 H 0.177 0.823 43 H 0.183 0.817 44 H 0.159 0.841 45 H 0.095 0.905 46 H 0.112 0.888 47 H 0.076 0.924 48 H 0.096 0.904 49 H 0.061 0.939 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.265 -26.013 8.209 27.279 hybrid contribution 0.123 1.105 -1.114 1.574 sum -0.142 -24.908 7.095 25.899 Atomic orbital electron populations 1.21741 0.98683 0.97659 0.99446 1.20627 0.91820 0.96087 0.84143 0.90340 1.22081 0.99578 0.79111 0.99525 1.47154 1.56240 1.10087 1.21337 1.15865 0.79112 0.81822 0.82412 1.90856 1.55916 1.67866 1.36615 1.45158 1.64693 1.05427 1.24342 1.19493 0.99402 0.81047 0.90270 1.22128 0.88344 0.95036 0.99019 1.22661 1.01259 0.90035 1.04766 1.20261 0.96038 0.95882 1.03572 1.20671 1.00631 0.89658 0.98310 1.21235 0.95199 1.00560 0.98454 1.21401 0.96006 0.95213 0.97644 1.20339 1.01404 0.90283 1.02435 1.20143 0.97053 0.82606 1.02007 1.83951 1.43514 1.20272 1.63492 1.22380 0.99571 0.95149 0.84506 1.21051 0.95781 0.85024 0.93951 0.97038 1.21665 1.00434 0.99972 0.96256 1.44225 1.63012 1.04377 1.20163 1.19346 1.09315 0.95161 1.14267 0.90906 1.25972 0.97935 0.99647 1.00078 1.70045 1.29852 1.14729 1.42459 0.85498 0.78397 0.77201 0.80179 1.20545 1.22867 1.20438 0.95036 0.93904 0.96274 0.90803 0.92027 0.75547 0.90765 0.86854 0.79998 0.83377 0.82270 0.81722 0.84118 0.90537 0.88848 0.92393 0.90370 0.93948 0.94377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.55 8.93 71.98 0.64 -4.91 16 2 C 0.18 8.49 2.32 45.03 0.10 8.60 16 3 H 0.08 4.24 6.10 -2.39 -0.01 4.23 16 4 C 0.12 4.94 5.97 86.42 0.52 5.45 16 5 N -0.61 -21.77 2.60 -835.14 -2.17 -23.94 16 6 C 0.71 24.62 8.29 179.05 1.49 26.11 16 7 O -0.63 -26.38 15.76 -3.99 -0.06 -26.44 16 8 N -0.74 -19.32 5.46 -482.29 -2.63 -21.96 16 9 C 0.22 5.04 6.18 85.64 0.53 5.57 16 10 C 0.00 0.04 6.60 24.72 0.16 0.20 16 11 C -0.17 -3.04 11.01 23.54 0.26 -2.78 16 12 C -0.16 -3.00 6.40 -20.21 -0.13 -3.13 16 13 C -0.07 -1.03 10.05 22.20 0.22 -0.80 16 14 C -0.14 -1.44 9.98 22.04 0.22 -1.22 16 15 C -0.08 -0.95 10.01 22.30 0.22 -0.73 16 16 C -0.13 -2.09 10.07 22.34 0.23 -1.87 16 17 C 0.03 0.63 7.42 22.99 0.17 0.80 16 18 O -0.21 -5.22 10.58 -8.89 -0.09 -5.31 16 19 C 0.11 3.32 5.90 86.57 0.51 3.83 16 20 C 0.15 5.64 3.24 45.18 0.15 5.79 16 21 H 0.01 0.50 7.38 -2.39 -0.02 0.48 16 22 C -0.13 -4.08 8.07 71.98 0.58 -3.50 16 23 N -0.59 -27.68 2.67 -649.89 -1.74 -29.41 16 24 C -0.25 -12.68 8.48 84.03 0.71 -11.96 16 25 H 0.07 3.53 6.30 -2.91 -0.02 3.51 16 26 C -0.04 -2.15 5.23 84.86 0.44 -1.70 16 27 N -0.93 -52.16 9.68 21.65 0.21 -51.95 16 28 Si 0.96 43.33 29.56 68.60 2.03 45.36 16 29 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 30 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 31 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 32 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.04 2.27 7.08 -2.38 -0.02 2.25 16 34 H 0.02 0.87 7.00 -2.38 -0.02 0.85 16 35 H 0.07 3.10 6.96 -2.38 -0.02 3.08 16 36 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.41 9.22 5.93 -92.71 -0.55 8.67 16 38 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.18 2.35 8.06 -2.91 -0.02 2.32 16 41 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 42 H 0.16 0.68 8.06 -2.91 -0.02 0.66 16 43 H 0.17 0.78 8.06 -2.91 -0.02 0.76 16 44 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 45 H 0.08 2.24 8.12 -2.38 -0.02 2.22 16 46 H 0.09 2.22 5.61 -2.39 -0.01 2.20 16 47 H 0.06 1.89 7.06 -2.39 -0.02 1.87 16 48 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 49 H 0.04 1.55 7.90 -2.39 -0.02 1.53 16 50 H 0.25 13.81 8.32 -92.70 -0.77 13.04 16 Total: -1.00 -68.70 396.53 2.98 -65.72 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: 0.42 Total: 24.20 kcal Atomic # 6 Polarization: 16.71 SS G_CDS: 7.03 Total: 23.74 kcal Atomic # 7 Polarization: -120.93 SS G_CDS: -6.33 Total: -127.26 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -0.16 Total: -31.75 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -68.70 2.98 -65.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864095471.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.095 kcal (2) G-P(sol) polarization free energy of solvation -68.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds