Wall clock time and date at job start Tue Mar 31 2020 05:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.74790 * 2 1 4 4 C 1.52930 * 109.52370 * 239.80988 * 2 1 3 5 5 N 1.46969 * 108.69003 * 190.95282 * 4 2 1 6 6 C 1.34771 * 120.59325 * 235.07995 * 5 4 2 7 7 O 1.21588 * 120.00147 * 355.29725 * 6 5 4 8 8 N 1.34783 * 119.99956 * 175.30100 * 6 5 4 9 9 C 1.46499 * 119.99840 * 185.34524 * 8 6 5 10 10 C 1.50702 * 109.46633 * 179.97438 * 9 8 6 11 11 C 1.33997 * 124.92317 * 89.72482 * 10 9 8 12 12 C 1.46784 * 106.18688 * 179.89419 * 11 10 9 13 13 C 1.39404 * 134.36954 * 180.11353 * 12 11 10 14 14 C 1.36739 * 119.71286 * 180.26555 * 13 12 11 15 15 C 1.38746 * 120.42061 * 0.02562 * 14 13 12 16 16 C 1.37852 * 120.68299 * 0.02562 * 15 14 13 17 17 C 1.38941 * 119.81941 * 359.97438 * 16 15 14 18 18 O 1.34444 * 124.92444 * 270.01783 * 10 9 8 19 19 C 1.46962 * 118.80857 * 55.09976 * 5 4 2 20 20 C 1.53367 * 108.63618 * 304.77280 * 19 5 4 21 21 H 1.09001 * 109.60702 * 289.67995 * 20 19 5 22 22 C 1.53002 * 109.74948 * 169.25444 * 20 19 5 23 23 N 1.46960 * 108.63447 * 49.42532 * 20 19 5 24 24 C 1.36940 * 120.59113 * 124.75225 * 23 20 19 25 25 H 1.07997 * 119.99776 * 306.82472 * 24 23 20 26 26 C 1.38809 * 119.99946 * 126.82935 * 24 23 20 27 27 N 1.31619 * 120.00419 * 340.16425 * 26 24 23 28 28 Si 1.86802 * 120.00060 * 160.16277 * 26 24 23 29 29 H 1.48496 * 109.47227 * 180.02562 * 28 26 24 30 30 H 1.48506 * 109.46872 * 300.00238 * 28 26 24 31 31 H 1.48501 * 109.47136 * 59.99995 * 28 26 24 32 32 H 1.08999 * 109.46892 * 308.42961 * 1 2 3 33 33 H 1.08998 * 109.47153 * 68.42841 * 1 2 3 34 34 H 1.08997 * 109.47104 * 188.43451 * 1 2 3 35 35 H 1.09005 * 109.68745 * 71.13204 * 4 2 1 36 36 H 1.08996 * 109.61820 * 310.73685 * 4 2 1 37 37 H 0.96998 * 119.99658 * 5.34412 * 8 6 5 38 38 H 1.09002 * 109.46906 * 299.99357 * 9 8 6 39 39 H 1.08997 * 109.47476 * 60.00243 * 9 8 6 40 40 H 1.08000 * 126.90855 * 0.02562 * 11 10 9 41 41 H 1.07996 * 120.14398 * 0.29145 * 13 12 11 42 42 H 1.08001 * 119.79059 * 180.02562 * 14 13 12 43 43 H 1.07997 * 119.65823 * 179.97438 * 15 14 13 44 44 H 1.08003 * 120.08862 * 180.02562 * 16 15 14 45 45 H 1.09005 * 109.60632 * 185.02643 * 19 5 4 46 46 H 1.09000 * 109.75088 * 64.60513 * 19 5 4 47 47 H 1.08993 * 109.47434 * 300.76704 * 22 20 19 48 48 H 1.09000 * 109.47498 * 60.76854 * 22 20 19 49 49 H 1.09007 * 109.46845 * 180.76728 * 22 20 19 50 50 H 0.96998 * 120.00165 * 175.08437 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8984 1.0259 0.0000 4 6 2.0411 -0.7248 -1.2459 5 7 3.4868 -0.9470 -1.1017 6 6 4.3451 -0.5113 -2.0450 7 8 3.9209 -0.0053 -3.0659 8 7 5.6738 -0.6367 -1.8567 9 6 6.6086 -0.0592 -2.8256 10 6 8.0231 -0.3366 -2.3857 11 6 8.7334 -1.4208 -2.7255 12 6 10.0431 -1.2708 -2.0799 13 6 11.2056 -2.0393 -2.0431 14 6 12.2824 -1.6053 -1.3207 15 6 12.2244 -0.4064 -0.6247 16 6 11.0831 0.3663 -0.6486 17 6 9.9777 -0.0564 -1.3765 18 8 8.7531 0.4651 -1.5908 19 6 3.9795 -1.6530 0.0893 20 6 3.4688 -0.9233 1.3379 21 1 3.9784 0.0353 1.4353 22 6 3.7360 -1.7754 2.5803 23 7 2.0233 -0.7011 1.1937 24 6 1.1511 -1.1445 2.1518 25 1 1.1723 -2.1780 2.4646 26 6 0.2397 -0.2656 2.7208 27 7 0.4468 1.0324 2.6531 28 14 -1.2808 -0.9251 3.5825 29 1 -2.0876 0.2091 4.1000 30 1 -2.0935 -1.7113 2.6197 31 1 -0.8705 -1.7975 4.7120 32 1 -0.3633 0.6388 0.8050 33 1 -0.3633 0.3778 -0.9557 34 1 -0.3633 -1.0165 0.1507 35 1 1.8510 -0.1152 -2.1293 36 1 1.5320 -1.6833 -1.3463 37 1 6.0110 -1.1093 -1.0796 38 1 6.4383 -0.5056 -3.8053 39 1 6.4516 1.0178 -2.8847 40 1 8.4085 -2.2393 -3.3507 41 1 11.2556 -2.9732 -2.5831 42 1 13.1838 -2.1996 -1.2916 43 1 13.0820 -0.0756 -0.0578 44 1 11.0487 1.2981 -0.1037 45 1 5.0695 -1.6565 0.0877 46 1 3.6105 -2.6787 0.0885 47 1 3.2306 -2.7356 2.4779 48 1 4.8086 -1.9388 2.6851 49 1 3.3592 -1.2588 3.4631 50 1 -0.2238 1.6486 2.9871 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000864095472.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:49 Heat of formation + Delta-G solvation = 45.054490 kcal Electronic energy + Delta-G solvation = -32012.554651 eV Core-core repulsion = 27814.746918 eV Total energy + Delta-G solvation = -4197.807733 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.75979 -40.00429 -38.23209 -37.51565 -35.08529 -34.25517 -33.02036 -32.75677 -31.39211 -30.72802 -30.09504 -27.80663 -26.77057 -26.13180 -25.14110 -23.60687 -23.15832 -22.09341 -21.34019 -20.40888 -20.24550 -19.22530 -18.12043 -17.65942 -16.97878 -16.64062 -16.15565 -15.91353 -15.51760 -15.20778 -15.01779 -14.53167 -14.41459 -14.21365 -14.02661 -13.82764 -13.69867 -13.53260 -13.35595 -12.96249 -12.65649 -12.56096 -12.41326 -12.07282 -12.03152 -11.63407 -11.47748 -11.38515 -11.24788 -10.91889 -10.84212 -10.57967 -10.50541 -10.47215 -10.32910 -10.05473 -9.90405 -9.85627 -9.58520 -9.10822 -8.94312 -8.51313 -8.31399 -7.93209 -6.43350 -5.76498 -3.60343 0.53251 1.04732 1.90300 2.35270 3.06034 3.30875 3.38070 3.40148 3.40338 3.50106 3.99392 4.16776 4.33659 4.40282 4.61288 4.76866 4.84557 4.94059 4.98692 5.12190 5.18946 5.23587 5.37031 5.44072 5.55602 5.63051 5.66392 5.86676 5.87401 5.93371 6.00962 6.09602 6.10955 6.18164 6.28051 6.30432 6.34850 6.35757 6.44864 6.47657 6.60260 6.80160 6.88442 6.89712 6.93379 7.01879 7.16725 7.29399 7.47995 7.70854 7.82361 8.22287 8.55498 8.85576 9.14295 9.67300 10.44207 11.12577 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.002248 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.681590 B =12452.756970 C =13396.493804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.183 3.817 3 H 0.031 0.969 4 C 0.112 3.888 5 N -0.612 5.612 6 C 0.708 3.292 7 O -0.600 6.600 8 N -0.751 5.751 9 C 0.217 3.783 10 C 0.021 3.979 11 C -0.182 4.182 12 C -0.134 4.134 13 C -0.069 4.069 14 C -0.138 4.138 15 C -0.093 4.093 16 C -0.107 4.107 17 C 0.058 3.942 18 O -0.186 6.186 19 C 0.099 3.901 20 C 0.156 3.844 21 H 0.029 0.971 22 C -0.128 4.128 23 N -0.575 5.575 24 C -0.264 4.264 25 H 0.053 0.947 26 C 0.037 3.963 27 N -0.872 5.872 28 Si 0.883 3.117 29 H -0.290 1.290 30 H -0.278 1.278 31 H -0.279 1.279 32 H 0.092 0.908 33 H 0.024 0.976 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.399 0.601 38 H 0.102 0.898 39 H 0.086 0.914 40 H 0.162 0.838 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.135 0.865 44 H 0.133 0.867 45 H 0.059 0.941 46 H 0.066 0.934 47 H 0.053 0.947 48 H 0.035 0.965 49 H 0.068 0.932 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.592 -5.334 -8.031 22.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.076 3.924 3 H 0.049 0.951 4 C -0.012 4.012 5 N -0.347 5.347 6 C 0.410 3.590 7 O -0.479 6.479 8 N -0.412 5.412 9 C 0.093 3.907 10 C -0.027 4.027 11 C -0.202 4.202 12 C -0.135 4.135 13 C -0.087 4.087 14 C -0.156 4.156 15 C -0.111 4.111 16 C -0.125 4.125 17 C 0.010 3.990 18 O -0.087 6.087 19 C -0.026 4.026 20 C 0.049 3.951 21 H 0.046 0.954 22 C -0.186 4.186 23 N -0.299 5.299 24 C -0.394 4.394 25 H 0.071 0.929 26 C -0.165 4.165 27 N -0.511 5.511 28 Si 0.711 3.289 29 H -0.215 1.215 30 H -0.204 1.204 31 H -0.205 1.205 32 H 0.110 0.890 33 H 0.043 0.957 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.236 0.764 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.179 0.821 41 H 0.145 0.855 42 H 0.147 0.853 43 H 0.153 0.847 44 H 0.151 0.849 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.072 0.928 48 H 0.054 0.946 49 H 0.087 0.913 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 20.094 -4.521 -8.521 22.289 hybrid contribution -0.538 -0.563 0.816 1.128 sum 19.555 -5.085 -7.705 21.625 Atomic orbital electron populations 1.22028 0.94933 1.02910 1.00430 1.20533 0.93870 0.93596 0.84395 0.95129 1.22337 0.77190 1.00818 1.00840 1.47210 1.07309 1.59473 1.20715 1.15759 0.80451 0.79288 0.83511 1.90874 1.77172 1.51836 1.28018 1.45258 1.04510 1.62577 1.28818 1.19480 0.78299 1.00692 0.92242 1.22306 0.94405 0.90856 0.95133 1.22368 0.92511 0.99963 1.05355 1.19971 0.95611 0.96466 1.01480 1.20306 0.91084 0.98973 0.98329 1.20795 0.98861 0.97142 0.98825 1.20957 0.96881 0.94347 0.98915 1.20005 0.89958 1.01775 1.00767 1.19675 0.85694 0.93669 0.99986 1.84011 1.22125 1.45356 1.57207 1.22346 0.96737 0.96602 0.86887 1.20841 0.87838 0.95347 0.91092 0.95375 1.21664 0.98017 1.00135 0.98782 1.43921 0.99174 1.67507 1.19326 1.18623 1.13329 0.92083 1.15351 0.92934 1.25526 1.00359 0.95111 0.95542 1.70161 1.32966 1.01179 1.46811 0.86725 0.83855 0.78358 0.79940 1.21539 1.20415 1.20452 0.88989 0.95727 0.92850 0.90162 0.92282 0.76411 0.88055 0.89628 0.82085 0.85460 0.85321 0.84726 0.84888 0.92266 0.91599 0.92802 0.94588 0.91298 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 7.81 37.16 0.29 -2.95 16 2 C 0.18 4.14 3.21 -67.71 -0.22 3.93 16 3 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 4 C 0.11 2.24 5.87 -3.82 -0.02 2.21 16 5 N -0.61 -11.27 2.95 -178.48 -0.53 -11.80 16 6 C 0.71 12.70 8.29 -86.92 -0.72 11.98 16 7 O -0.60 -12.47 15.77 5.29 0.08 -12.38 16 8 N -0.75 -10.51 5.46 -66.41 -0.36 -10.87 16 9 C 0.22 2.58 6.18 -5.19 -0.03 2.54 16 10 C 0.02 0.24 6.60 -35.80 -0.24 0.00 16 11 C -0.18 -1.84 11.01 -37.62 -0.41 -2.25 16 12 C -0.13 -1.43 6.40 -105.16 -0.67 -2.10 16 13 C -0.07 -0.58 10.05 -39.69 -0.40 -0.98 16 14 C -0.14 -1.00 9.98 -39.94 -0.40 -1.39 16 15 C -0.09 -0.68 10.01 -39.54 -0.40 -1.08 16 16 C -0.11 -0.98 10.07 -39.46 -0.40 -1.38 16 17 C 0.06 0.66 7.42 -38.47 -0.29 0.38 16 18 O -0.19 -2.36 10.58 3.93 0.04 -2.32 16 19 C 0.10 1.66 5.91 -3.60 -0.02 1.64 16 20 C 0.16 3.14 3.65 -67.49 -0.25 2.89 16 21 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 22 C -0.13 -2.33 8.19 37.16 0.30 -2.02 16 23 N -0.57 -13.43 2.75 -157.28 -0.43 -13.87 16 24 C -0.26 -6.64 6.63 -15.06 -0.10 -6.74 16 25 H 0.05 1.33 7.16 -52.49 -0.38 0.96 16 26 C 0.04 0.96 3.33 -17.43 -0.06 0.90 16 27 N -0.87 -23.91 11.57 55.49 0.64 -23.27 16 28 Si 0.88 20.28 29.60 -169.99 -5.03 15.25 16 29 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 30 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 31 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 32 H 0.09 2.29 4.90 -51.93 -0.25 2.04 16 33 H 0.02 0.48 8.13 -51.93 -0.42 0.05 16 34 H 0.05 1.20 7.51 -51.93 -0.39 0.81 16 35 H 0.08 1.62 7.02 -51.93 -0.36 1.26 16 36 H 0.06 1.15 8.11 -51.93 -0.42 0.73 16 37 H 0.40 5.07 5.91 -40.82 -0.24 4.82 16 38 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.16 1.27 8.06 -52.49 -0.42 0.85 16 41 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.13 0.60 8.06 -52.49 -0.42 0.17 16 43 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 44 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 45 H 0.06 0.82 5.55 -51.93 -0.29 0.53 16 46 H 0.07 1.09 8.12 -51.93 -0.42 0.67 16 47 H 0.05 0.97 7.47 -51.93 -0.39 0.58 16 48 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.07 1.42 7.71 -51.93 -0.40 1.02 16 50 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 LS Contribution 397.51 15.07 5.99 5.99 Total: -1.00 -30.87 397.51 -10.95 -41.82 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -7.33 Total: 5.85 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -4.02 Total: 5.59 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: -0.68 Total: -59.80 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.12 Total: -14.70 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.03 Total: 15.25 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.87 -10.95 -41.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864095472.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.877 kcal (2) G-P(sol) polarization free energy of solvation -30.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds