Wall clock time and date at job start Tue Mar 31 2020 05:13:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.74790 * 2 1 4 4 C 1.52930 * 109.52370 * 239.80988 * 2 1 3 5 5 N 1.46969 * 108.69003 * 190.95282 * 4 2 1 6 6 C 1.34771 * 120.59325 * 235.07995 * 5 4 2 7 7 O 1.21588 * 120.00147 * 355.29725 * 6 5 4 8 8 N 1.34783 * 119.99956 * 175.30100 * 6 5 4 9 9 C 1.46499 * 119.99840 * 185.34524 * 8 6 5 10 10 C 1.50702 * 109.46633 * 179.97438 * 9 8 6 11 11 C 1.33997 * 124.92317 * 89.72482 * 10 9 8 12 12 C 1.46784 * 106.18688 * 179.89419 * 11 10 9 13 13 C 1.39404 * 134.36954 * 180.11353 * 12 11 10 14 14 C 1.36739 * 119.71286 * 180.26555 * 13 12 11 15 15 C 1.38746 * 120.42061 * 0.02562 * 14 13 12 16 16 C 1.37852 * 120.68299 * 0.02562 * 15 14 13 17 17 C 1.38941 * 119.81941 * 359.97438 * 16 15 14 18 18 O 1.34444 * 124.92444 * 270.01783 * 10 9 8 19 19 C 1.46962 * 118.80857 * 55.09976 * 5 4 2 20 20 C 1.53367 * 108.63618 * 304.77280 * 19 5 4 21 21 H 1.09001 * 109.60702 * 289.67995 * 20 19 5 22 22 C 1.53002 * 109.74948 * 169.25444 * 20 19 5 23 23 N 1.46960 * 108.63447 * 49.42532 * 20 19 5 24 24 C 1.36940 * 120.59113 * 124.75225 * 23 20 19 25 25 H 1.07997 * 119.99776 * 306.82472 * 24 23 20 26 26 C 1.38809 * 119.99946 * 126.82935 * 24 23 20 27 27 N 1.31619 * 120.00419 * 340.16425 * 26 24 23 28 28 Si 1.86802 * 120.00060 * 160.16277 * 26 24 23 29 29 H 1.48496 * 109.47227 * 180.02562 * 28 26 24 30 30 H 1.48506 * 109.46872 * 300.00238 * 28 26 24 31 31 H 1.48501 * 109.47136 * 59.99995 * 28 26 24 32 32 H 1.08999 * 109.46892 * 308.42961 * 1 2 3 33 33 H 1.08998 * 109.47153 * 68.42841 * 1 2 3 34 34 H 1.08997 * 109.47104 * 188.43451 * 1 2 3 35 35 H 1.09005 * 109.68745 * 71.13204 * 4 2 1 36 36 H 1.08996 * 109.61820 * 310.73685 * 4 2 1 37 37 H 0.96998 * 119.99658 * 5.34412 * 8 6 5 38 38 H 1.09002 * 109.46906 * 299.99357 * 9 8 6 39 39 H 1.08997 * 109.47476 * 60.00243 * 9 8 6 40 40 H 1.08000 * 126.90855 * 0.02562 * 11 10 9 41 41 H 1.07996 * 120.14398 * 0.29145 * 13 12 11 42 42 H 1.08001 * 119.79059 * 180.02562 * 14 13 12 43 43 H 1.07997 * 119.65823 * 179.97438 * 15 14 13 44 44 H 1.08003 * 120.08862 * 180.02562 * 16 15 14 45 45 H 1.09005 * 109.60632 * 185.02643 * 19 5 4 46 46 H 1.09000 * 109.75088 * 64.60513 * 19 5 4 47 47 H 1.08993 * 109.47434 * 300.76704 * 22 20 19 48 48 H 1.09000 * 109.47498 * 60.76854 * 22 20 19 49 49 H 1.09007 * 109.46845 * 180.76728 * 22 20 19 50 50 H 0.96998 * 120.00165 * 175.08437 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8984 1.0259 0.0000 4 6 2.0411 -0.7248 -1.2459 5 7 3.4868 -0.9470 -1.1017 6 6 4.3451 -0.5113 -2.0450 7 8 3.9209 -0.0053 -3.0659 8 7 5.6738 -0.6367 -1.8567 9 6 6.6086 -0.0592 -2.8256 10 6 8.0231 -0.3366 -2.3857 11 6 8.7334 -1.4208 -2.7255 12 6 10.0431 -1.2708 -2.0799 13 6 11.2056 -2.0393 -2.0431 14 6 12.2824 -1.6053 -1.3207 15 6 12.2244 -0.4064 -0.6247 16 6 11.0831 0.3663 -0.6486 17 6 9.9777 -0.0564 -1.3765 18 8 8.7531 0.4651 -1.5908 19 6 3.9795 -1.6530 0.0893 20 6 3.4688 -0.9233 1.3379 21 1 3.9784 0.0353 1.4353 22 6 3.7360 -1.7754 2.5803 23 7 2.0233 -0.7011 1.1937 24 6 1.1511 -1.1445 2.1518 25 1 1.1723 -2.1780 2.4646 26 6 0.2397 -0.2656 2.7208 27 7 0.4468 1.0324 2.6531 28 14 -1.2808 -0.9251 3.5825 29 1 -2.0876 0.2091 4.1000 30 1 -2.0935 -1.7113 2.6197 31 1 -0.8705 -1.7975 4.7120 32 1 -0.3633 0.6388 0.8050 33 1 -0.3633 0.3778 -0.9557 34 1 -0.3633 -1.0165 0.1507 35 1 1.8510 -0.1152 -2.1293 36 1 1.5320 -1.6833 -1.3463 37 1 6.0110 -1.1093 -1.0796 38 1 6.4383 -0.5056 -3.8053 39 1 6.4516 1.0178 -2.8847 40 1 8.4085 -2.2393 -3.3507 41 1 11.2556 -2.9732 -2.5831 42 1 13.1838 -2.1996 -1.2916 43 1 13.0820 -0.0756 -0.0578 44 1 11.0487 1.2981 -0.1037 45 1 5.0695 -1.6565 0.0877 46 1 3.6105 -2.6787 0.0885 47 1 3.2306 -2.7356 2.4779 48 1 4.8086 -1.9388 2.6851 49 1 3.3592 -1.2588 3.4631 50 1 -0.2238 1.6486 2.9871 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000864095472.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:48 Heat of formation + Delta-G solvation = 27.827984 kcal Electronic energy + Delta-G solvation = -32013.301648 eV Core-core repulsion = 27814.746918 eV Total energy + Delta-G solvation = -4198.554730 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 357.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.52433 -41.43919 -39.19662 -38.81903 -36.28947 -35.91643 -34.45358 -33.81367 -33.13710 -31.37643 -31.03601 -29.54364 -27.95978 -27.59659 -26.68340 -25.21734 -23.90241 -22.79532 -22.18207 -22.00632 -21.80792 -20.79299 -19.46476 -18.35708 -18.01633 -17.90228 -17.51859 -16.98932 -16.85316 -16.57310 -16.32856 -16.22841 -15.51846 -15.47965 -15.31575 -15.10493 -14.77949 -14.75745 -14.53474 -14.07489 -13.86528 -13.65627 -13.35089 -13.32969 -13.23273 -13.21305 -12.95581 -12.73229 -12.60807 -12.58071 -12.33604 -12.25475 -12.13843 -11.87330 -11.74587 -11.64367 -11.56063 -11.29660 -11.10417 -10.39093 -10.13800 -9.62435 -9.54651 -9.22038 -8.37864 -7.68604 -5.59777 -0.16222 0.38489 1.08989 1.47309 1.51125 1.55581 1.57011 1.82436 2.09400 2.51082 2.76521 2.89574 3.21783 3.25047 3.50875 3.68163 3.99904 4.06091 4.11077 4.15323 4.21054 4.21469 4.29247 4.39260 4.46036 4.48467 4.51777 4.55736 4.65896 4.71806 4.74452 4.83659 4.90799 4.92158 4.96679 5.00010 5.18736 5.19765 5.27777 5.33226 5.37593 5.42734 5.44124 5.51410 5.60397 5.63987 5.74311 5.75067 5.85150 5.98299 6.16709 6.57840 6.87698 7.23045 7.45349 7.78540 8.52018 9.14824 Molecular weight = 357.18amu Principal moments of inertia in cm(-1) A = 0.016836 B = 0.002248 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.681590 B =12452.756970 C =13396.493804 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.185 3.815 3 H -0.009 1.009 4 C 0.126 3.874 5 N -0.619 5.619 6 C 0.707 3.293 7 O -0.630 6.630 8 N -0.736 5.736 9 C 0.221 3.779 10 C 0.001 3.999 11 C -0.166 4.166 12 C -0.157 4.157 13 C -0.074 4.074 14 C -0.137 4.137 15 C -0.085 4.085 16 C -0.127 4.127 17 C 0.029 3.971 18 O -0.210 6.210 19 C 0.111 3.889 20 C 0.148 3.852 21 H 0.001 0.999 22 C -0.117 4.117 23 N -0.589 5.589 24 C -0.259 4.259 25 H 0.055 0.945 26 C -0.003 4.003 27 N -0.908 5.908 28 Si 0.937 3.063 29 H -0.298 1.298 30 H -0.272 1.272 31 H -0.273 1.273 32 H 0.066 0.934 33 H 0.046 0.954 34 H 0.051 0.949 35 H 0.075 0.925 36 H 0.069 0.931 37 H 0.406 0.594 38 H 0.115 0.885 39 H 0.074 0.926 40 H 0.184 0.816 41 H 0.149 0.851 42 H 0.160 0.840 43 H 0.165 0.835 44 H 0.140 0.860 45 H 0.093 0.907 46 H 0.079 0.921 47 H 0.057 0.943 48 H 0.073 0.927 49 H 0.037 0.963 50 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.127 -8.006 -8.457 25.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.078 3.922 3 H 0.008 0.992 4 C 0.001 3.999 5 N -0.354 5.354 6 C 0.408 3.592 7 O -0.512 6.512 8 N -0.396 5.396 9 C 0.098 3.902 10 C -0.047 4.047 11 C -0.186 4.186 12 C -0.157 4.157 13 C -0.092 4.092 14 C -0.154 4.154 15 C -0.102 4.102 16 C -0.145 4.145 17 C -0.019 4.019 18 O -0.113 6.113 19 C -0.013 4.013 20 C 0.041 3.959 21 H 0.019 0.981 22 C -0.175 4.175 23 N -0.314 5.314 24 C -0.389 4.389 25 H 0.072 0.928 26 C -0.203 4.203 27 N -0.550 5.550 28 Si 0.764 3.236 29 H -0.225 1.225 30 H -0.198 1.198 31 H -0.199 1.199 32 H 0.085 0.915 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.245 0.755 38 H 0.133 0.867 39 H 0.092 0.908 40 H 0.201 0.799 41 H 0.167 0.833 42 H 0.178 0.822 43 H 0.183 0.817 44 H 0.158 0.842 45 H 0.111 0.889 46 H 0.097 0.903 47 H 0.076 0.924 48 H 0.092 0.908 49 H 0.056 0.944 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 22.679 -7.228 -8.939 25.426 hybrid contribution -1.122 0.284 0.965 1.507 sum 21.557 -6.944 -7.973 24.010 Atomic orbital electron populations 1.21893 0.94811 1.02139 1.00677 1.20410 0.94075 0.91941 0.85807 0.99158 1.21990 0.78469 1.00647 0.98760 1.47217 1.06840 1.59882 1.21423 1.15867 0.81432 0.78873 0.82987 1.90850 1.77975 1.53097 1.29299 1.45168 1.03318 1.61813 1.29300 1.19503 0.78456 0.99973 0.92297 1.22132 0.94179 0.91695 0.96645 1.22666 0.92092 0.99617 1.04236 1.20264 0.96595 0.96781 1.02101 1.20674 0.90559 0.99540 0.98435 1.21240 0.99546 0.97110 0.97531 1.21403 0.96866 0.93881 0.98091 1.20343 0.90213 1.02760 1.01226 1.20153 0.85802 0.94622 1.01275 1.83952 1.23023 1.46326 1.58007 1.22262 0.98626 0.96158 0.84295 1.21019 0.85858 0.95056 0.93941 0.98093 1.21552 1.00469 0.99215 0.96261 1.44164 1.00544 1.67333 1.19336 1.18802 1.13309 0.91988 1.14851 0.92802 1.26080 1.02635 0.95098 0.96442 1.70279 1.33621 1.02302 1.48763 0.85865 0.81080 0.77461 0.79175 1.22460 1.19769 1.19883 0.91542 0.93520 0.93037 0.90647 0.91261 0.75521 0.86689 0.90812 0.79906 0.83285 0.82208 0.81727 0.84211 0.88924 0.90316 0.92358 0.90784 0.94394 0.94079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.22 7.81 71.98 0.56 -5.65 16 2 C 0.18 8.56 3.21 44.88 0.14 8.70 16 3 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 4 C 0.13 5.00 5.87 86.27 0.51 5.50 16 5 N -0.62 -22.27 2.95 -836.86 -2.47 -24.74 16 6 C 0.71 24.87 8.29 179.05 1.49 26.35 16 7 O -0.63 -26.14 15.77 -3.99 -0.06 -26.20 16 8 N -0.74 -19.80 5.46 -482.29 -2.63 -22.43 16 9 C 0.22 5.15 6.18 85.63 0.53 5.68 16 10 C 0.00 0.01 6.60 24.72 0.16 0.18 16 11 C -0.17 -3.09 11.01 23.54 0.26 -2.83 16 12 C -0.16 -3.08 6.40 -20.21 -0.13 -3.21 16 13 C -0.07 -1.04 10.05 22.20 0.22 -0.82 16 14 C -0.14 -1.50 9.98 22.04 0.22 -1.28 16 15 C -0.08 -1.01 10.01 22.30 0.22 -0.78 16 16 C -0.13 -2.21 10.07 22.35 0.23 -1.99 16 17 C 0.03 0.65 7.42 22.99 0.17 0.82 16 18 O -0.21 -5.42 10.58 -8.86 -0.09 -5.52 16 19 C 0.11 3.50 5.91 86.41 0.51 4.01 16 20 C 0.15 5.89 3.65 45.03 0.16 6.05 16 21 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 22 C -0.12 -4.10 8.19 71.98 0.59 -3.51 16 23 N -0.59 -27.80 2.75 -651.52 -1.79 -29.59 16 24 C -0.26 -13.08 6.63 84.03 0.56 -12.53 16 25 H 0.05 2.70 7.16 -2.91 -0.02 2.67 16 26 C 0.00 -0.18 3.33 84.86 0.28 0.10 16 27 N -0.91 -51.52 11.57 21.65 0.25 -51.27 16 28 Si 0.94 42.09 29.60 68.60 2.03 44.12 16 29 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 30 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 31 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 32 H 0.07 3.40 4.90 -2.39 -0.01 3.39 16 33 H 0.05 1.84 8.13 -2.39 -0.02 1.82 16 34 H 0.05 2.31 7.51 -2.39 -0.02 2.29 16 35 H 0.08 3.06 7.02 -2.38 -0.02 3.04 16 36 H 0.07 2.61 8.11 -2.39 -0.02 2.59 16 37 H 0.41 9.57 5.91 -92.71 -0.55 9.02 16 38 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 41 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 42 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 43 H 0.17 0.88 8.06 -2.91 -0.02 0.86 16 44 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 45 H 0.09 2.30 5.55 -2.38 -0.01 2.28 16 46 H 0.08 2.35 8.12 -2.39 -0.02 2.33 16 47 H 0.06 1.98 7.47 -2.39 -0.02 1.96 16 48 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 49 H 0.04 1.55 7.71 -2.38 -0.02 1.53 16 50 H 0.25 13.88 8.32 -92.71 -0.77 13.11 16 Total: -1.00 -69.46 397.51 2.33 -67.14 By element: Atomic # 1 Polarization: 23.28 SS G_CDS: 0.41 Total: 23.69 kcal Atomic # 6 Polarization: 18.12 SS G_CDS: 6.69 Total: 24.80 kcal Atomic # 7 Polarization: -121.39 SS G_CDS: -6.65 Total: -128.03 kcal Atomic # 8 Polarization: -31.56 SS G_CDS: -0.16 Total: -31.72 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -69.46 2.33 -67.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000864095472.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.965 kcal (2) G-P(sol) polarization free energy of solvation -69.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds