Wall clock time and date at job start Tue Mar 31 2020 06:06:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38233 * 120.00537 * 2 1 4 4 C 1.38231 * 120.00781 * 180.02562 * 3 2 1 5 5 C 1.38236 * 119.99582 * 359.95490 * 4 3 2 6 6 S 1.76197 * 119.99722 * 180.02562 * 5 4 3 7 7 O 1.42095 * 106.40447 * 336.45602 * 6 5 4 8 8 O 1.42107 * 106.39993 * 203.53912 * 6 5 4 9 9 N 1.65604 * 107.22171 * 90.00292 * 6 5 4 10 10 C 1.30072 * 120.00205 * 179.97438 * 9 6 5 11 11 O 1.35114 * 119.99937 * 0.02562 * 10 9 6 12 12 N 1.37549 * 120.00250 * 179.97438 * 10 9 6 13 13 C 1.39110 * 120.00185 * 175.77257 * 12 10 9 14 14 C 1.39516 * 119.83723 * 324.37889 * 13 12 10 15 15 C 1.36359 * 120.16053 * 179.75748 * 14 13 12 16 16 C 1.40873 * 119.83355 * 0.51285 * 15 14 13 17 17 C 1.41148 * 120.15934 * 179.71878 * 16 15 14 18 18 H 1.07998 * 119.99625 * 162.07154 * 17 16 15 19 19 C 1.39874 * 119.99800 * 342.06595 * 17 16 15 20 20 N 1.30886 * 120.00152 * 322.61464 * 19 17 16 21 21 Si 1.86803 * 119.99605 * 142.61976 * 19 17 16 22 22 H 1.48493 * 109.47386 * 94.99054 * 21 19 17 23 23 H 1.48506 * 109.46662 * 214.99339 * 21 19 17 24 24 H 1.48507 * 109.47100 * 334.98772 * 21 19 17 25 25 C 1.40883 * 119.68069 * 359.73918 * 16 15 14 26 26 C 1.36348 * 119.82752 * 0.02562 * 25 16 15 27 27 C 1.38236 * 120.00309 * 0.27433 * 5 4 3 28 28 C 1.38238 * 120.00064 * 179.97438 * 2 1 3 29 29 H 1.08990 * 109.47264 * 89.99889 * 1 2 3 30 30 H 1.09002 * 109.47127 * 209.99927 * 1 2 3 31 31 H 1.08996 * 109.47184 * 329.99273 * 1 2 3 32 32 H 1.08010 * 119.99497 * 359.97438 * 3 2 1 33 33 H 1.07998 * 119.99937 * 179.97438 * 4 3 2 34 34 H 0.96696 * 113.99981 * 359.97438 * 11 10 9 35 35 H 0.97000 * 119.99914 * 356.05537 * 12 10 9 36 36 H 1.08001 * 119.91968 * 0.02562 * 14 13 12 37 37 H 1.07996 * 120.08019 * 180.23024 * 15 14 13 38 38 H 0.97005 * 120.00017 * 180.02562 * 20 19 17 39 39 H 1.08002 * 120.08141 * 179.97438 * 25 16 15 40 40 H 1.08000 * 119.91596 * 179.97438 * 26 25 16 41 41 H 1.07997 * 120.00164 * 179.72306 * 27 5 4 42 42 H 1.08001 * 119.99660 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2717 -0.0001 -0.0001 6 16 6.0337 0.0000 -0.0001 7 8 6.4350 1.2494 -0.5450 8 8 6.4349 -1.2500 -0.5442 9 7 6.5240 0.0004 1.5817 10 6 7.7925 0.0000 1.8694 11 8 8.7101 -0.0002 0.8777 12 7 8.1997 0.0010 3.1832 13 6 9.5532 -0.0883 3.4920 14 6 10.3949 -0.8729 2.7031 15 6 11.7235 -0.9611 2.9968 16 6 12.2436 -0.2662 4.1063 17 6 13.6168 -0.3574 4.4201 18 1 14.0724 0.3767 5.0681 19 6 14.3872 -1.3986 3.8920 20 7 13.8714 -2.5948 3.7645 21 14 16.1522 -1.0817 3.3688 22 1 17.0699 -1.4405 4.4797 23 1 16.4710 -1.9082 2.1768 24 1 16.3188 0.3554 3.0335 25 6 11.3866 0.5199 4.9015 26 6 10.0611 0.6025 4.5927 27 6 3.5806 -1.1972 -0.0049 28 6 2.1982 -1.1972 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6582 2.1325 -0.0004 33 1 4.1205 2.1324 -0.0010 34 1 8.3289 -0.0005 -0.0109 35 1 7.5429 0.0597 3.8945 36 1 9.9939 -1.4082 1.8551 37 1 12.3746 -1.5659 2.3830 38 1 14.4058 -3.3169 3.3985 39 1 11.7783 1.0551 5.7538 40 1 9.4027 1.2043 5.2015 41 1 4.1205 -2.1325 -0.0091 42 1 1.6581 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000148578.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:19 Heat of formation + Delta-G solvation = -38.619545 kcal Electronic energy + Delta-G solvation = -28264.033450 eV Core-core repulsion = 24108.653880 eV Total energy + Delta-G solvation = -4155.379570 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.098 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.10759 -39.52634 -37.88601 -37.07854 -35.85899 -35.31604 -33.81363 -33.30367 -32.59557 -31.28935 -29.74607 -29.13821 -27.59286 -25.22765 -23.10329 -23.00191 -22.20164 -21.51861 -20.64042 -19.80567 -18.38743 -17.92365 -17.61133 -16.92833 -16.28181 -16.20507 -15.77267 -15.50098 -15.32026 -15.21504 -14.73181 -14.43801 -14.19603 -14.07342 -13.78650 -13.49939 -12.91178 -12.69208 -12.63303 -12.55528 -12.32621 -12.28462 -12.17862 -12.09611 -11.94039 -11.83753 -11.40635 -11.37110 -11.23831 -10.91680 -10.81990 -10.67197 -10.14501 -9.89030 -9.72069 -9.37772 -9.33248 -9.27090 -9.05137 -7.79431 -7.45352 -7.11609 -4.47289 0.37288 0.68614 1.07888 1.89754 2.50019 2.68768 2.89721 2.94409 2.98023 3.11578 3.13789 3.34400 3.59677 3.73316 4.24643 4.34879 4.44057 4.60022 4.65405 4.67429 5.06044 5.06875 5.15821 5.33627 5.37303 5.43976 5.60829 5.71546 5.81165 5.90874 5.91620 5.97199 6.09756 6.16388 6.58558 6.59834 6.61139 6.77433 6.81204 6.99815 7.17061 7.36419 7.57359 7.79593 7.81852 8.00220 8.19125 8.35918 8.60956 8.74079 9.74852 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.026701 B = 0.001947 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.401835 B =14374.389072 C =14682.870656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.035 4.035 3 C -0.145 4.145 4 C -0.013 4.013 5 C -0.633 4.633 6 S 2.638 3.362 7 O -0.988 6.988 8 O -0.987 6.987 9 N -1.065 6.065 10 C 0.685 3.315 11 O -0.486 6.486 12 N -0.562 5.562 13 C -0.060 4.060 14 C -0.076 4.076 15 C -0.177 4.177 16 C 0.113 3.887 17 C -0.453 4.453 18 H 0.087 0.913 19 C 0.089 3.911 20 N -0.747 5.747 21 Si 0.897 3.103 22 H -0.267 1.267 23 H -0.271 1.271 24 H -0.254 1.254 25 C -0.223 4.223 26 C -0.074 4.074 27 C -0.013 4.013 28 C -0.144 4.144 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.132 0.868 33 H 0.141 0.859 34 H 0.397 0.603 35 H 0.429 0.571 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.289 0.711 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.141 0.859 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.653 2.776 -5.117 19.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.036 4.036 3 C -0.164 4.164 4 C -0.032 4.032 5 C -0.722 4.722 6 S 2.732 3.268 7 O -0.976 6.976 8 O -0.976 6.976 9 N -0.954 5.954 10 C 0.378 3.622 11 O -0.279 6.279 12 N -0.195 5.195 13 C -0.152 4.152 14 C -0.096 4.096 15 C -0.197 4.197 16 C 0.110 3.890 17 C -0.479 4.479 18 H 0.105 0.895 19 C -0.136 4.136 20 N -0.368 5.368 21 Si 0.720 3.280 22 H -0.192 1.192 23 H -0.196 1.196 24 H -0.178 1.178 25 C -0.243 4.243 26 C -0.094 4.094 27 C -0.032 4.032 28 C -0.163 4.163 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.150 0.850 33 H 0.159 0.841 34 H 0.253 0.747 35 H 0.270 0.730 36 H 0.118 0.882 37 H 0.127 0.873 38 H 0.100 0.900 39 H 0.118 0.882 40 H 0.114 0.886 41 H 0.159 0.841 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -18.010 2.500 -5.253 18.926 hybrid contribution -0.152 -0.040 -0.718 0.735 sum -18.162 2.461 -5.971 19.276 Atomic orbital electron populations 1.20923 0.90622 1.03419 1.02881 1.20264 0.96432 0.93356 0.93522 1.21149 0.94027 0.97986 1.03201 1.20957 0.94702 0.96739 0.90851 1.30021 1.24534 0.99499 1.18187 1.03252 0.75593 0.74030 0.73920 1.93605 1.80626 1.44492 1.78887 1.93610 1.80618 1.44436 1.78917 1.73736 1.19020 1.59108 1.43562 1.19138 0.80407 0.78290 0.84359 1.85130 1.37843 1.87862 1.17026 1.41407 1.08392 1.69192 1.00516 1.17080 0.81085 1.11749 1.05332 1.20303 0.94268 0.96950 0.98079 1.20649 0.93680 1.05665 0.99689 1.17624 0.92563 0.89233 0.89604 1.19608 0.93630 1.08858 1.25791 0.89467 1.26061 1.01483 0.93679 0.92385 1.69972 1.39576 1.00580 1.26656 0.86474 0.81470 0.80751 0.79319 1.19207 1.19609 1.17774 1.20441 0.92450 1.08883 1.02515 1.19996 0.95589 0.97634 0.96186 1.20969 0.94711 0.96770 0.90772 1.21157 0.94028 0.97999 1.03150 0.90444 0.90956 0.90965 0.85040 0.84127 0.74688 0.72996 0.88199 0.87263 0.90016 0.88191 0.88591 0.84097 0.85024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 10.01 36.00 0.36 -0.33 16 2 C -0.04 -0.32 5.88 -104.63 -0.62 -0.94 16 3 C -0.14 -1.42 9.70 -39.59 -0.38 -1.80 16 4 C -0.01 -0.16 9.52 -39.58 -0.38 -0.54 16 5 C -0.63 -8.65 5.97 -39.58 -0.24 -8.89 16 6 S 2.64 41.70 4.25 -107.50 -0.46 41.25 16 7 O -0.99 -17.19 16.61 -58.06 -0.96 -18.15 16 8 O -0.99 -17.34 16.60 -58.08 -0.96 -18.31 16 9 N -1.07 -17.48 10.98 29.65 0.33 -17.15 16 10 C 0.69 12.19 8.43 -88.39 -0.74 11.44 16 11 O -0.49 -8.84 10.59 -17.21 -0.18 -9.02 16 12 N -0.56 -9.73 5.41 -11.67 -0.06 -9.80 16 13 C -0.06 -1.22 6.28 -83.60 -0.53 -1.75 16 14 C -0.08 -1.71 8.51 -39.78 -0.34 -2.04 16 15 C -0.18 -4.31 8.80 -39.26 -0.35 -4.65 16 16 C 0.11 2.77 5.61 -106.80 -0.60 2.17 16 17 C -0.45 -11.00 8.91 -37.87 -0.34 -11.34 16 18 H 0.09 2.02 8.05 -52.49 -0.42 1.60 16 19 C 0.09 2.05 4.67 -17.34 -0.08 1.97 16 20 N -0.75 -17.69 11.88 55.54 0.66 -17.03 16 21 Si 0.90 16.96 29.68 -169.99 -5.05 11.92 16 22 H -0.27 -4.94 7.11 56.52 0.40 -4.53 16 23 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 24 H -0.25 -4.85 7.11 56.52 0.40 -4.45 16 25 C -0.22 -4.96 9.74 -39.26 -0.38 -5.34 16 26 C -0.07 -1.48 9.90 -39.78 -0.39 -1.88 16 27 C -0.01 -0.16 9.52 -39.58 -0.38 -0.53 16 28 C -0.14 -1.43 9.70 -39.58 -0.38 -1.81 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 31 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 32 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 33 H 0.14 1.58 7.62 -52.49 -0.40 1.18 16 34 H 0.40 6.28 5.71 52.36 0.30 6.58 16 35 H 0.43 6.16 8.93 -40.82 -0.36 5.80 16 36 H 0.10 2.15 6.44 -52.49 -0.34 1.82 16 37 H 0.11 2.72 6.43 -52.49 -0.34 2.38 16 38 H 0.29 6.12 8.30 -40.82 -0.34 5.78 16 39 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 40 H 0.10 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.14 1.62 7.61 -52.49 -0.40 1.22 16 42 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 374.11 15.07 5.64 5.64 Total: -1.00 -29.68 374.11 -10.87 -40.54 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -4.05 Total: 16.36 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: -5.76 Total: -26.25 kcal Atomic # 7 Polarization: -44.90 SS G_CDS: 0.92 Total: -43.97 kcal Atomic # 8 Polarization: -43.37 SS G_CDS: -2.11 Total: -45.48 kcal Atomic # 14 Polarization: 16.96 SS G_CDS: -5.05 Total: 11.92 kcal Atomic # 16 Polarization: 41.70 SS G_CDS: -0.46 Total: 41.25 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.68 -10.87 -40.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000148578.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.924 kcal (2) G-P(sol) polarization free energy of solvation -29.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds