Wall clock time and date at job start Tue Mar 31 2020 06:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38233 * 120.00537 * 2 1 4 4 C 1.38231 * 120.00781 * 180.02562 * 3 2 1 5 5 C 1.38236 * 119.99582 * 359.95490 * 4 3 2 6 6 S 1.76197 * 119.99722 * 180.02562 * 5 4 3 7 7 O 1.42095 * 106.40447 * 336.45602 * 6 5 4 8 8 O 1.42107 * 106.39993 * 203.53912 * 6 5 4 9 9 N 1.65604 * 107.22171 * 90.00292 * 6 5 4 10 10 C 1.30072 * 120.00205 * 179.97438 * 9 6 5 11 11 O 1.35114 * 119.99937 * 0.02562 * 10 9 6 12 12 N 1.37549 * 120.00250 * 179.97438 * 10 9 6 13 13 C 1.39110 * 120.00185 * 175.77257 * 12 10 9 14 14 C 1.39516 * 119.83723 * 324.37889 * 13 12 10 15 15 C 1.36359 * 120.16053 * 179.75748 * 14 13 12 16 16 C 1.40873 * 119.83355 * 0.51285 * 15 14 13 17 17 C 1.41148 * 120.15934 * 179.71878 * 16 15 14 18 18 H 1.07998 * 119.99625 * 162.07154 * 17 16 15 19 19 C 1.39874 * 119.99800 * 342.06595 * 17 16 15 20 20 N 1.30886 * 120.00152 * 322.61464 * 19 17 16 21 21 Si 1.86803 * 119.99605 * 142.61976 * 19 17 16 22 22 H 1.48493 * 109.47386 * 94.99054 * 21 19 17 23 23 H 1.48506 * 109.46662 * 214.99339 * 21 19 17 24 24 H 1.48507 * 109.47100 * 334.98772 * 21 19 17 25 25 C 1.40883 * 119.68069 * 359.73918 * 16 15 14 26 26 C 1.36348 * 119.82752 * 0.02562 * 25 16 15 27 27 C 1.38236 * 120.00309 * 0.27433 * 5 4 3 28 28 C 1.38238 * 120.00064 * 179.97438 * 2 1 3 29 29 H 1.08990 * 109.47264 * 89.99889 * 1 2 3 30 30 H 1.09002 * 109.47127 * 209.99927 * 1 2 3 31 31 H 1.08996 * 109.47184 * 329.99273 * 1 2 3 32 32 H 1.08010 * 119.99497 * 359.97438 * 3 2 1 33 33 H 1.07998 * 119.99937 * 179.97438 * 4 3 2 34 34 H 0.96696 * 113.99981 * 359.97438 * 11 10 9 35 35 H 0.97000 * 119.99914 * 356.05537 * 12 10 9 36 36 H 1.08001 * 119.91968 * 0.02562 * 14 13 12 37 37 H 1.07996 * 120.08019 * 180.23024 * 15 14 13 38 38 H 0.97005 * 120.00017 * 180.02562 * 20 19 17 39 39 H 1.08002 * 120.08141 * 179.97438 * 25 16 15 40 40 H 1.08000 * 119.91596 * 179.97438 * 26 25 16 41 41 H 1.07997 * 120.00164 * 179.72306 * 27 5 4 42 42 H 1.08001 * 119.99660 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1971 -0.0005 5 6 4.2717 -0.0001 -0.0001 6 16 6.0337 0.0000 -0.0001 7 8 6.4350 1.2494 -0.5450 8 8 6.4349 -1.2500 -0.5442 9 7 6.5240 0.0004 1.5817 10 6 7.7925 0.0000 1.8694 11 8 8.7101 -0.0002 0.8777 12 7 8.1997 0.0010 3.1832 13 6 9.5532 -0.0883 3.4920 14 6 10.3949 -0.8729 2.7031 15 6 11.7235 -0.9611 2.9968 16 6 12.2436 -0.2662 4.1063 17 6 13.6168 -0.3574 4.4201 18 1 14.0724 0.3767 5.0681 19 6 14.3872 -1.3986 3.8920 20 7 13.8714 -2.5948 3.7645 21 14 16.1522 -1.0817 3.3688 22 1 17.0699 -1.4405 4.4797 23 1 16.4710 -1.9082 2.1768 24 1 16.3188 0.3554 3.0335 25 6 11.3866 0.5199 4.9015 26 6 10.0611 0.6025 4.5927 27 6 3.5806 -1.1972 -0.0049 28 6 2.1982 -1.1972 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6582 2.1325 -0.0004 33 1 4.1205 2.1324 -0.0010 34 1 8.3289 -0.0005 -0.0109 35 1 7.5429 0.0597 3.8945 36 1 9.9939 -1.4082 1.8551 37 1 12.3746 -1.5659 2.3830 38 1 14.4058 -3.3169 3.3985 39 1 11.7783 1.0551 5.7538 40 1 9.4027 1.2043 5.2015 41 1 4.1205 -2.1325 -0.0091 42 1 1.6581 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000148578.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:17 Heat of formation + Delta-G solvation = -59.044514 kcal Electronic energy + Delta-G solvation = -28264.919143 eV Core-core repulsion = 24108.653880 eV Total energy + Delta-G solvation = -4156.265263 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.098 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.55969 -40.34608 -39.54538 -38.41376 -37.25866 -36.83991 -35.42616 -34.13760 -33.99870 -32.10433 -31.48998 -30.82882 -28.24607 -26.91568 -24.52661 -23.91939 -23.31187 -22.93019 -22.29171 -21.12504 -19.64027 -19.36952 -19.14512 -18.34999 -17.79383 -17.42774 -17.12455 -16.81146 -16.57450 -16.27619 -15.96004 -15.75451 -15.32887 -15.19436 -14.77676 -14.58185 -14.56553 -14.14125 -13.94934 -13.77091 -13.48059 -13.47425 -13.28142 -13.27289 -13.16017 -13.12591 -13.07984 -12.77854 -12.44114 -12.23434 -12.14981 -11.84903 -11.79501 -11.38522 -11.27921 -11.01616 -10.71175 -10.13376 -10.09997 -9.54565 -9.16082 -8.81069 -6.26588 -0.80239 -0.26225 0.25993 0.38999 0.99873 1.10350 1.24257 1.38193 1.48875 1.59902 2.03046 2.12884 2.15397 2.54004 2.54908 3.15291 3.35829 3.65408 3.76934 3.83291 3.88652 4.30512 4.32514 4.36251 4.38896 4.45426 4.60895 4.66733 4.81811 4.92664 4.96638 4.98782 5.05304 5.06277 5.07402 5.20382 5.23177 5.30994 5.44214 5.50070 5.65214 5.83569 5.88544 6.02447 6.13204 6.27467 6.55268 6.75868 6.83228 6.99740 8.08069 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.026701 B = 0.001947 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.401835 B =14374.389072 C =14682.870656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.029 4.029 3 C -0.144 4.144 4 C -0.031 4.031 5 C -0.648 4.648 6 S 2.639 3.361 7 O -1.008 7.008 8 O -1.010 7.010 9 N -1.053 6.053 10 C 0.678 3.322 11 O -0.499 6.499 12 N -0.556 5.556 13 C -0.045 4.045 14 C -0.086 4.086 15 C -0.202 4.202 16 C 0.085 3.915 17 C -0.489 4.489 18 H 0.088 0.912 19 C 0.054 3.946 20 N -0.782 5.782 21 Si 0.968 3.032 22 H -0.256 1.256 23 H -0.267 1.267 24 H -0.257 1.257 25 C -0.234 4.234 26 C -0.069 4.069 27 C -0.033 4.033 28 C -0.145 4.145 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.162 0.838 33 H 0.142 0.858 34 H 0.404 0.596 35 H 0.444 0.556 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.297 0.703 39 H 0.113 0.887 40 H 0.136 0.864 41 H 0.139 0.861 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.558 3.568 -4.978 22.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.029 4.029 3 C -0.163 4.163 4 C -0.051 4.051 5 C -0.742 4.742 6 S 2.738 3.262 7 O -0.997 6.997 8 O -0.999 6.999 9 N -0.940 5.940 10 C 0.370 3.630 11 O -0.293 6.293 12 N -0.193 5.193 13 C -0.139 4.139 14 C -0.106 4.106 15 C -0.222 4.222 16 C 0.082 3.918 17 C -0.515 4.515 18 H 0.106 0.894 19 C -0.169 4.169 20 N -0.404 5.404 21 Si 0.788 3.212 22 H -0.180 1.180 23 H -0.191 1.191 24 H -0.181 1.181 25 C -0.254 4.254 26 C -0.089 4.089 27 C -0.052 4.052 28 C -0.164 4.164 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.180 0.820 33 H 0.160 0.840 34 H 0.262 0.738 35 H 0.288 0.712 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.131 0.869 40 H 0.154 0.846 41 H 0.157 0.843 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -20.912 3.292 -5.105 21.777 hybrid contribution 0.399 -0.263 -0.814 0.944 sum -20.514 3.029 -5.919 21.564 Atomic orbital electron populations 1.21028 0.87712 1.04825 1.04146 1.20760 0.98491 0.92635 0.91056 1.21542 0.93062 0.99809 1.01897 1.21155 0.96089 0.96169 0.91654 1.29571 1.22164 1.01001 1.21421 1.02924 0.76809 0.73110 0.73399 1.93572 1.81955 1.45064 1.79078 1.93576 1.81996 1.45176 1.79146 1.73812 1.18232 1.57813 1.44140 1.19356 0.80797 0.78392 0.84437 1.85097 1.38563 1.87853 1.17741 1.41232 1.07494 1.69700 1.00858 1.17108 0.82134 1.10117 1.04530 1.20424 0.94084 0.97454 0.98658 1.20585 0.94394 1.06855 1.00318 1.17963 0.93433 0.90244 0.90209 1.19841 0.94283 1.09847 1.27567 0.89399 1.26833 1.05321 0.92994 0.91720 1.69978 1.41407 1.01455 1.27550 0.85415 0.76495 0.80168 0.79153 1.17986 1.19103 1.18106 1.20691 0.93247 1.08745 1.02675 1.20333 0.95373 0.97106 0.96062 1.21147 0.96117 0.96195 0.91758 1.21536 0.93045 0.99837 1.01962 0.89002 0.89661 0.89567 0.82026 0.84049 0.73795 0.71162 0.88036 0.89046 0.89202 0.86928 0.84602 0.84281 0.82173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.83 10.01 71.24 0.71 -0.12 16 2 C -0.03 -0.43 5.88 -19.87 -0.12 -0.54 16 3 C -0.14 -2.41 9.70 22.27 0.22 -2.20 16 4 C -0.03 -0.72 9.52 22.27 0.21 -0.50 16 5 C -0.65 -17.42 5.97 22.27 0.13 -17.28 16 6 S 2.64 84.49 4.25 -56.49 -0.24 84.24 16 7 O -1.01 -35.65 16.61 -127.15 -2.11 -37.76 16 8 O -1.01 -36.37 16.60 -127.14 -2.11 -38.48 16 9 N -1.05 -34.29 10.98 -174.37 -1.91 -36.20 16 10 C 0.68 23.95 8.43 179.57 1.51 25.47 16 11 O -0.50 -18.45 10.59 -83.75 -0.89 -19.34 16 12 N -0.56 -18.70 5.41 -301.18 -1.63 -20.32 16 13 C -0.05 -1.84 6.28 38.60 0.24 -1.59 16 14 C -0.09 -3.96 8.51 22.14 0.19 -3.77 16 15 C -0.20 -10.23 8.80 22.48 0.20 -10.03 16 16 C 0.08 4.28 5.61 -21.27 -0.12 4.16 16 17 C -0.49 -24.57 8.91 23.38 0.21 -24.36 16 18 H 0.09 4.21 8.05 -2.91 -0.02 4.19 16 19 C 0.05 2.54 4.67 85.23 0.40 2.94 16 20 N -0.78 -38.37 11.88 21.82 0.26 -38.11 16 21 Si 0.97 35.45 29.68 68.60 2.04 37.49 16 22 H -0.26 -8.81 7.11 99.48 0.71 -8.11 16 23 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 24 H -0.26 -9.45 7.11 99.48 0.71 -8.75 16 25 C -0.23 -10.39 9.74 22.48 0.22 -10.17 16 26 C -0.07 -2.67 9.90 22.14 0.22 -2.45 16 27 C -0.03 -0.77 9.52 22.27 0.21 -0.55 16 28 C -0.15 -2.48 9.70 22.27 0.22 -2.27 16 29 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.08 0.42 8.09 -2.39 -0.02 0.40 16 31 H 0.09 0.40 8.09 -2.39 -0.02 0.38 16 32 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 33 H 0.14 3.10 7.62 -2.91 -0.02 3.07 16 34 H 0.40 13.25 5.71 -78.38 -0.45 12.80 16 35 H 0.44 11.93 8.93 -92.71 -0.83 11.11 16 36 H 0.10 4.53 6.44 -2.91 -0.02 4.51 16 37 H 0.09 4.84 6.43 -2.91 -0.02 4.82 16 38 H 0.30 12.98 8.30 -92.70 -0.77 12.21 16 39 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 40 H 0.14 4.16 8.06 -2.91 -0.02 4.13 16 41 H 0.14 3.18 7.61 -2.91 -0.02 3.16 16 42 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -66.09 374.11 -2.13 -68.22 By element: Atomic # 1 Polarization: 43.72 SS G_CDS: -0.18 Total: 43.54 kcal Atomic # 6 Polarization: -47.93 SS G_CDS: 4.65 Total: -43.28 kcal Atomic # 7 Polarization: -91.35 SS G_CDS: -3.28 Total: -94.64 kcal Atomic # 8 Polarization: -90.47 SS G_CDS: -5.11 Total: -95.57 kcal Atomic # 14 Polarization: 35.45 SS G_CDS: 2.04 Total: 37.49 kcal Atomic # 16 Polarization: 84.49 SS G_CDS: -0.24 Total: 84.24 kcal Total: -66.09 -2.13 -68.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000148578.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.171 kcal (2) G-P(sol) polarization free energy of solvation -66.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds