Wall clock time and date at job start Tue Mar 31 2020 06:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21281 * 120.00224 * 2 1 4 4 N 1.34778 * 119.99512 * 179.97438 * 2 1 3 5 5 C 1.39926 * 119.99329 * 185.22872 * 4 2 1 6 6 C 1.38870 * 120.07448 * 33.16373 * 5 4 2 7 7 C 1.38107 * 119.93029 * 180.20802 * 6 5 4 8 8 C 1.38280 * 120.07272 * 359.50784 * 7 6 5 9 9 S 1.76204 * 119.93124 * 180.25524 * 8 7 6 10 10 O 1.42097 * 106.40048 * 198.25974 * 9 8 7 11 11 O 1.42098 * 106.39923 * 331.17914 * 9 8 7 12 12 N 1.65593 * 107.21746 * 84.71972 * 9 8 7 13 13 C 1.38867 * 119.99936 * 62.95152 * 12 9 8 14 14 C 1.39565 * 119.84004 * 253.78014 * 13 12 9 15 15 C 1.36339 * 120.15804 * 179.72067 * 14 13 12 16 16 C 1.40887 * 119.83419 * 0.54868 * 15 14 13 17 17 C 1.41143 * 120.15076 * 179.70013 * 16 15 14 18 18 H 1.07998 * 119.99643 * 209.39590 * 17 16 15 19 19 C 1.39862 * 120.00288 * 29.40170 * 17 16 15 20 20 N 1.30908 * 119.99949 * 10.92460 * 19 17 16 21 21 Si 1.86792 * 120.00083 * 190.92606 * 19 17 16 22 22 H 1.48499 * 109.47291 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47245 * 119.99808 * 21 19 17 24 24 H 1.48505 * 109.47221 * 240.00138 * 21 19 17 25 25 C 1.40879 * 119.69112 * 359.72584 * 16 15 14 26 26 C 1.36341 * 119.83564 * 359.97438 * 25 16 15 27 27 C 1.38283 * 120.13891 * 0.23806 * 8 7 6 28 28 C 1.38112 * 120.06981 * 359.97438 * 27 8 7 29 29 H 1.09002 * 109.47102 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47620 * 300.00529 * 1 2 3 31 31 H 1.09005 * 109.46985 * 59.99979 * 1 2 3 32 32 H 0.97001 * 120.00602 * 5.23201 * 4 2 1 33 33 H 1.08003 * 120.03467 * 359.97438 * 6 5 4 34 34 H 1.08001 * 119.96481 * 179.78647 * 7 6 5 35 35 H 0.96996 * 120.00257 * 242.95160 * 12 9 8 36 36 H 1.08004 * 119.92511 * 359.97438 * 14 13 12 37 37 H 1.08004 * 120.08327 * 180.27394 * 15 14 13 38 38 H 0.96996 * 119.99948 * 180.02562 * 20 19 17 39 39 H 1.08001 * 120.08250 * 179.97438 * 25 16 15 40 40 H 1.08008 * 119.91807 * 179.97438 * 26 25 16 41 41 H 1.07996 * 119.96521 * 180.02562 * 27 8 7 42 42 H 1.08000 * 120.03427 * 180.02562 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 0.0005 5 6 3.5757 -1.1697 0.1110 6 6 4.2157 -0.1956 0.8659 7 6 5.5929 -0.1983 0.9694 8 6 6.3339 -1.1755 0.3306 9 16 8.0903 -1.1793 0.4706 10 8 8.5759 -1.9862 -0.5934 11 8 8.4806 0.1738 0.6605 12 7 8.4686 -1.9762 1.8720 13 6 8.1360 -3.3163 2.0202 14 6 7.0783 -3.6812 2.8545 15 6 6.7426 -4.9945 3.0003 16 6 7.4737 -5.9851 2.3153 17 6 7.1359 -7.3471 2.4663 18 1 7.8980 -8.1063 2.3704 19 6 5.8142 -7.7137 2.7400 20 7 4.8560 -6.8268 2.6456 21 14 5.4163 -9.4689 3.2402 22 1 6.6662 -10.2700 3.2722 23 1 4.7923 -9.4702 4.5876 24 1 4.4739 -10.0621 2.2576 25 6 8.5437 -5.6097 1.4793 26 6 8.8643 -4.2921 1.3382 27 6 5.6993 -2.1500 -0.4177 28 6 4.3226 -2.1503 -0.5287 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6989 -2.0056 -0.0757 33 1 3.6373 0.5655 1.3686 34 1 6.0914 0.5611 1.5536 35 1 8.9224 -1.5070 2.5895 36 1 6.5218 -2.9211 3.3827 37 1 5.9210 -5.2752 3.6428 38 1 3.9395 -7.0810 2.8357 39 1 9.1087 -6.3638 0.9515 40 1 9.6847 -4.0028 0.6980 41 1 6.2807 -2.9121 -0.9151 42 1 3.8276 -2.9119 -1.1128 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000328954.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:31 Heat of formation + Delta-G solvation = -62.065510 kcal Electronic energy + Delta-G solvation = -29382.991238 eV Core-core repulsion = 25226.594975 eV Total energy + Delta-G solvation = -4156.396263 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.098 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -40.68368 -38.49005 -38.03690 -36.72455 -35.41032 -35.03201 -34.78768 -32.84333 -31.18380 -30.95297 -29.65270 -28.83627 -28.76760 -24.79378 -23.39794 -22.86052 -21.18869 -20.87450 -20.70224 -19.13320 -18.13122 -17.56246 -17.36740 -17.25085 -17.05099 -16.39061 -15.81459 -15.41005 -15.03069 -14.64112 -14.27228 -14.16056 -14.02650 -13.71390 -13.42064 -13.30291 -13.05538 -12.88924 -12.79795 -12.50985 -12.37237 -12.13133 -11.68888 -11.67326 -11.59642 -11.42647 -11.37232 -11.26337 -10.90198 -10.85686 -10.75064 -10.59334 -10.15295 -9.93350 -9.79133 -9.36159 -8.97100 -8.90135 -8.46495 -7.69646 -7.35840 -6.90280 -4.53146 0.71806 1.00253 1.46431 2.25466 2.55040 2.76724 2.97592 2.99646 3.03080 3.03470 3.43733 3.72965 3.80879 4.19683 4.36670 4.45951 4.70383 4.76190 4.95568 4.99739 5.03197 5.33518 5.38452 5.48834 5.49716 5.58701 5.91641 6.05490 6.16522 6.20411 6.24573 6.29768 6.34471 6.36136 6.85152 6.91883 6.94720 7.03452 7.08125 7.17490 7.33899 7.48363 7.77078 7.88085 7.91612 7.98480 8.13622 8.46978 8.71469 8.80571 10.02688 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.008062 B = 0.003840 C = 0.002755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3472.188932 B = 7290.088014 C =10159.082183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.510 3.490 3 O -0.524 6.524 4 N -0.674 5.674 5 C 0.194 3.806 6 C -0.148 4.148 7 C -0.003 4.003 8 C -0.678 4.678 9 S 2.679 3.321 10 O -0.957 6.957 11 O -0.981 6.981 12 N -1.032 6.032 13 C -0.028 4.028 14 C -0.085 4.085 15 C -0.158 4.158 16 C 0.119 3.881 17 C -0.450 4.450 18 H 0.081 0.919 19 C 0.073 3.927 20 N -0.792 5.792 21 Si 0.912 3.088 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.274 1.274 25 C -0.219 4.219 26 C -0.066 4.066 27 C 0.017 3.983 28 C -0.163 4.163 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.415 0.585 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.407 0.593 36 H 0.091 0.909 37 H 0.121 0.879 38 H 0.281 0.719 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.146 0.854 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.873 7.084 -2.092 11.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.298 3.702 3 O -0.399 6.399 4 N -0.320 5.320 5 C 0.099 3.901 6 C -0.169 4.169 7 C -0.022 4.022 8 C -0.765 4.765 9 S 2.772 3.228 10 O -0.947 6.947 11 O -0.971 6.971 12 N -0.786 5.786 13 C -0.124 4.124 14 C -0.107 4.107 15 C -0.179 4.179 16 C 0.116 3.884 17 C -0.480 4.480 18 H 0.099 0.901 19 C -0.145 4.145 20 N -0.418 5.418 21 Si 0.736 3.264 22 H -0.183 1.183 23 H -0.197 1.197 24 H -0.199 1.199 25 C -0.239 4.239 26 C -0.088 4.088 27 C -0.003 4.003 28 C -0.184 4.184 29 H 0.099 0.901 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.252 0.748 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.244 0.756 36 H 0.109 0.891 37 H 0.139 0.861 38 H 0.091 0.909 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.164 0.836 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.290 8.249 -2.825 12.031 hybrid contribution -1.299 -1.237 0.697 1.925 sum -9.590 7.011 -2.128 12.068 Atomic orbital electron populations 1.21865 0.90490 1.04769 1.05756 1.21075 0.91002 0.83084 0.75001 1.90766 1.70501 1.31190 1.47449 1.43852 1.05432 1.10281 1.72445 1.17972 0.82476 0.95863 0.93793 1.21109 0.94763 1.00435 1.00572 1.20696 0.93448 0.94505 0.93596 1.30889 1.27580 1.05564 1.12479 1.02669 0.73743 0.72485 0.73858 1.93551 1.77944 1.69564 1.53643 1.93525 1.82117 1.35370 1.86097 1.52222 1.72533 1.18477 1.35413 1.16636 1.03208 0.80661 1.11864 1.20644 0.95554 0.96335 0.98134 1.20982 1.02852 0.91193 1.02835 1.17761 0.89694 0.93554 0.87382 1.19684 0.94070 0.93072 1.41163 0.90071 1.25943 0.96173 0.99824 0.92558 1.69836 1.01387 1.35610 1.34924 0.86192 0.79471 0.81813 0.78902 1.18308 1.19700 1.19901 1.20726 1.04137 0.94335 1.04741 1.20636 0.97216 0.93016 0.97897 1.20765 0.94079 0.93920 0.91573 1.20968 0.94239 1.00617 1.02587 0.90122 0.88164 0.88317 0.74801 0.84398 0.84442 0.75611 0.89074 0.86103 0.90861 0.88322 0.88093 0.83591 0.84849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 10.39 36.01 0.37 -0.57 16 2 C 0.51 5.39 7.68 -10.98 -0.08 5.30 16 3 O -0.52 -7.81 14.77 5.56 0.08 -7.73 16 4 N -0.67 -7.01 5.34 -9.86 -0.05 -7.06 16 5 C 0.19 2.74 6.28 -83.69 -0.53 2.21 16 6 C -0.15 -2.26 8.66 -39.40 -0.34 -2.60 16 7 C 0.00 -0.04 9.51 -39.61 -0.38 -0.42 16 8 C -0.68 -11.52 5.86 -39.55 -0.23 -11.75 16 9 S 2.68 47.57 5.70 -107.50 -0.61 46.95 16 10 O -0.96 -19.34 16.08 -57.17 -0.92 -20.26 16 11 O -0.98 -18.41 17.42 -57.17 -1.00 -19.41 16 12 N -1.03 -17.79 5.65 32.51 0.18 -17.61 16 13 C -0.03 -0.56 5.80 -83.69 -0.49 -1.05 16 14 C -0.09 -1.81 9.90 -39.77 -0.39 -2.20 16 15 C -0.16 -3.74 8.59 -39.26 -0.34 -4.07 16 16 C 0.12 2.92 5.54 -106.79 -0.59 2.33 16 17 C -0.45 -10.98 9.04 -37.87 -0.34 -11.32 16 18 H 0.08 1.91 7.87 -52.49 -0.41 1.50 16 19 C 0.07 1.68 5.24 -17.34 -0.09 1.59 16 20 N -0.79 -18.66 10.88 55.54 0.60 -18.06 16 21 Si 0.91 17.28 29.57 -169.99 -5.03 12.25 16 22 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 23 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 24 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 25 C -0.22 -5.03 9.74 -39.27 -0.38 -5.41 16 26 C -0.07 -1.44 9.18 -39.77 -0.37 -1.80 16 27 C 0.02 0.28 9.52 -39.61 -0.38 -0.10 16 28 C -0.16 -2.37 9.96 -39.39 -0.39 -2.76 16 29 H 0.08 0.26 7.92 -51.93 -0.41 -0.15 16 30 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.42 2.92 8.66 -40.82 -0.35 2.57 16 33 H 0.14 2.04 6.40 -52.48 -0.34 1.70 16 34 H 0.14 1.92 7.74 -52.49 -0.41 1.52 16 35 H 0.41 5.91 8.95 -34.46 -0.31 5.60 16 36 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 37 H 0.12 2.96 6.26 -52.48 -0.33 2.63 16 38 H 0.28 5.98 8.30 -40.82 -0.34 5.64 16 39 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 40 H 0.10 2.07 7.84 -52.48 -0.41 1.66 16 41 H 0.15 2.45 7.50 -52.49 -0.39 2.06 16 42 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 375.53 15.07 5.66 5.66 Total: -1.00 -32.12 375.53 -10.63 -42.75 By element: Atomic # 1 Polarization: 19.75 SS G_CDS: -4.61 Total: 15.14 kcal Atomic # 6 Polarization: -27.68 SS G_CDS: -4.94 Total: -32.62 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.74 Total: -42.73 kcal Atomic # 8 Polarization: -45.57 SS G_CDS: -1.83 Total: -47.41 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.03 Total: 12.25 kcal Atomic # 16 Polarization: 47.57 SS G_CDS: -0.61 Total: 46.95 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.12 -10.63 -42.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000328954.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.315 kcal (2) G-P(sol) polarization free energy of solvation -32.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds