Wall clock time and date at job start Tue Mar 31 2020 07:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86803 * 119.99845 * 2 1 4 4 H 1.48507 * 109.46591 * 239.99639 * 3 2 1 5 5 H 1.48495 * 109.47217 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47281 * 119.99994 * 3 2 1 7 7 C 1.39900 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00028 * 175.56516 * 7 2 1 9 9 C 1.41151 * 120.00080 * 355.56336 * 7 2 1 10 10 C 1.40871 * 120.16447 * 214.77817 * 9 7 2 11 11 C 1.36375 * 119.82929 * 180.02562 * 10 9 7 12 12 C 1.39479 * 120.16720 * 0.02562 * 11 10 9 13 13 N 1.39242 * 119.83674 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99734 * 35.28050 * 13 12 11 15 15 O 1.21281 * 119.99927 * 355.71353 * 14 13 12 16 16 C 1.50701 * 120.00005 * 175.71523 * 14 13 12 17 17 C 1.52999 * 109.47210 * 180.02562 * 16 14 13 18 18 S 1.81400 * 109.46900 * 180.02562 * 17 16 14 19 19 C 1.76203 * 102.99764 * 179.97438 * 18 17 16 20 20 C 1.38964 * 120.06821 * 359.72431 * 19 18 17 21 21 C 1.38081 * 119.93360 * 179.79311 * 20 19 18 22 22 C 1.38406 * 120.06683 * 0.47998 * 21 20 19 23 23 Cl 1.73594 * 119.93472 * 179.72764 * 22 21 20 24 24 C 1.38398 * 120.13345 * 359.74942 * 22 21 20 25 25 C 1.38093 * 120.06452 * 0.02562 * 24 22 21 26 26 C 1.39488 * 120.33284 * 0.25074 * 12 11 10 27 27 C 1.36371 * 120.16823 * 359.48946 * 26 12 11 28 28 H 0.97005 * 119.99755 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.08270 * 0.02562 * 10 9 7 30 30 H 1.07996 * 119.91418 * 179.97438 * 11 10 9 31 31 H 0.96992 * 120.00070 * 215.28894 * 13 12 11 32 32 H 1.08994 * 109.46941 * 59.99916 * 16 14 13 33 33 H 1.09004 * 109.46714 * 300.00019 * 16 14 13 34 34 H 1.08997 * 109.47340 * 59.99423 * 17 16 14 35 35 H 1.09004 * 109.46938 * 299.99442 * 17 16 14 36 36 H 1.08003 * 120.03238 * 0.02562 * 20 19 18 37 37 H 1.07999 * 119.96784 * 180.20764 * 21 20 19 38 38 H 1.07997 * 119.96854 * 180.02562 * 24 22 21 39 39 H 1.08004 * 120.03039 * 179.97438 * 25 24 22 40 40 H 1.08002 * 119.91436 * 179.74513 * 26 12 11 41 41 H 1.07997 * 120.08478 * 180.25452 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0965 1.6963 -1.2125 5 1 1.2777 2.7465 -0.0006 6 1 3.0964 1.6965 1.2124 7 6 2.0082 -1.2116 0.0005 8 1 3.0858 -1.2130 -0.0718 9 6 1.3056 -2.4321 0.0956 10 6 1.8649 -3.5180 0.7975 11 6 1.1804 -4.6942 0.8847 12 6 -0.0702 -4.8239 0.2806 13 7 -0.7628 -6.0282 0.3735 14 6 -0.6810 -6.7677 1.4973 15 8 0.0562 -6.4241 2.3969 16 6 -1.5055 -8.0215 1.6360 17 6 -1.2283 -8.6665 2.9954 18 16 -2.2203 -10.1761 3.1619 19 6 -1.7745 -10.7689 4.7602 20 6 -0.8489 -10.0725 5.5280 21 6 -0.5048 -10.5372 6.7819 22 6 -1.0733 -11.7008 7.2702 23 17 -0.6330 -12.2857 8.8442 24 6 -1.9919 -12.3991 6.5061 25 6 -2.3435 -11.9368 5.2532 26 6 -0.6278 -3.7550 -0.4209 27 6 0.0424 -2.5709 -0.5122 28 1 -0.4850 0.8401 -0.0004 29 1 2.8333 -3.4191 1.2653 30 1 1.6080 -5.5277 1.4220 31 1 -1.3041 -6.3350 -0.3706 32 1 -1.2417 -8.7196 0.8416 33 1 -2.5637 -7.7704 1.5624 34 1 -1.4924 -7.9682 3.7895 35 1 -0.1701 -8.9175 3.0693 36 1 -0.4019 -9.1666 5.1458 37 1 0.2119 -9.9946 7.3803 38 1 -2.4342 -13.3065 6.8899 39 1 -3.0600 -12.4825 4.6572 40 1 -1.5948 -3.8642 -0.8895 41 1 -0.3925 -1.7429 -1.0522 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000452275.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:51 Heat of formation + Delta-G solvation = -3.770602 kcal Electronic energy + Delta-G solvation = -24671.962939 eV Core-core repulsion = 20861.085036 eV Total energy + Delta-G solvation = -3810.877904 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 361.064 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.82577 -39.49094 -37.39582 -36.80330 -34.56375 -33.30096 -32.83582 -31.50309 -31.17672 -29.64318 -28.95284 -25.90937 -24.30269 -23.18179 -22.95163 -21.56081 -20.76021 -19.69213 -18.22283 -17.49766 -17.19672 -16.81691 -16.37703 -15.90208 -15.82234 -15.21520 -14.97906 -14.60645 -14.21917 -13.99827 -13.98759 -13.78673 -13.46932 -13.04058 -12.72800 -12.54146 -12.24504 -12.20388 -12.15923 -11.89675 -11.75002 -11.63288 -11.39834 -11.22844 -11.16338 -11.03965 -10.77010 -10.57006 -10.09672 -9.85626 -9.54710 -9.52874 -9.50224 -9.19644 -8.94015 -7.74560 -7.59904 -6.92252 -6.65788 -4.38659 0.58148 0.83645 1.06648 1.75897 2.02767 2.47100 2.97241 3.04649 3.07055 3.09553 3.11243 3.27359 3.66158 3.95014 4.31659 4.41080 4.43923 4.63449 4.67940 4.80300 4.92522 4.98146 5.09805 5.28738 5.41869 5.46427 5.58756 5.60431 5.61464 5.76573 5.79701 6.14194 6.24072 6.38634 6.68808 6.85439 7.02139 7.15191 7.24740 7.58855 7.68059 7.80063 8.01394 8.18953 8.26672 8.56228 8.65519 8.88531 8.94885 10.25242 Molecular weight = 361.06amu Principal moments of inertia in cm(-1) A = 0.017853 B = 0.001527 C = 0.001434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.001967 B =18328.376054 C =19519.715775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.070 3.930 3 Si 0.916 3.084 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.461 4.461 8 H 0.076 0.924 9 C 0.100 3.900 10 C -0.206 4.206 11 C -0.085 4.085 12 C 0.000 4.000 13 N -0.648 5.648 14 C 0.504 3.496 15 O -0.532 6.532 16 C -0.125 4.125 17 C -0.091 4.091 18 S -0.108 6.108 19 C -0.077 4.077 20 C -0.120 4.120 21 C -0.088 4.088 22 C -0.043 4.043 23 Cl -0.071 7.071 24 C -0.093 4.093 25 C -0.091 4.091 26 C -0.120 4.120 27 C -0.141 4.141 28 H 0.279 0.721 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.397 0.603 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.091 0.909 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.806 -21.661 7.693 23.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.492 4.492 8 H 0.094 0.906 9 C 0.098 3.902 10 C -0.226 4.226 11 C -0.104 4.104 12 C -0.093 4.093 13 N -0.291 5.291 14 C 0.288 3.712 15 O -0.409 6.409 16 C -0.166 4.166 17 C -0.239 4.239 18 S 0.138 5.862 19 C -0.190 4.190 20 C -0.144 4.144 21 C -0.108 4.108 22 C -0.073 4.073 23 Cl -0.042 7.042 24 C -0.113 4.113 25 C -0.115 4.115 26 C -0.140 4.140 27 C -0.161 4.161 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.125 0.875 31 H 0.231 0.769 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.157 0.843 37 H 0.156 0.844 38 H 0.156 0.844 39 H 0.155 0.845 40 H 0.110 0.890 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.238 -21.690 7.568 24.086 hybrid contribution 0.883 1.125 0.846 1.662 sum -6.355 -20.565 8.414 23.111 Atomic orbital electron populations 1.69751 1.07294 1.28876 1.37916 1.25884 0.94957 1.01195 0.92515 0.86239 0.79804 0.80058 0.79799 1.19020 1.20404 1.19082 1.19478 0.94745 0.90235 1.44700 0.90604 1.17734 0.92288 0.92005 0.88175 1.20808 1.01254 0.94988 1.05590 1.20384 0.92756 0.97844 0.99462 1.17263 0.94299 0.85837 1.11867 1.42958 1.48698 1.21327 1.16099 1.20264 0.83456 0.85021 0.82443 1.90701 1.39208 1.70912 1.40056 1.21330 1.02119 0.96203 0.96982 1.23445 1.02916 0.96179 1.01392 1.85386 1.56935 1.28794 1.15125 1.21867 1.00112 0.98658 0.98363 1.21300 0.98026 1.00692 0.94380 1.21007 0.99494 0.94672 0.95652 1.20936 1.00769 0.97172 0.88386 1.98376 1.92136 1.88247 1.25470 1.20972 0.96713 0.99980 0.93657 1.20719 1.00333 0.95012 0.95411 1.20319 0.98360 0.93151 1.02142 1.21191 0.97291 0.95561 1.02084 0.91040 0.88589 0.87510 0.76947 0.88063 0.87961 0.88197 0.88254 0.84346 0.84438 0.84440 0.84485 0.89044 0.85016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.85 10.60 55.55 0.59 -20.26 16 2 C 0.07 1.74 5.42 -17.34 -0.09 1.65 16 3 Si 0.92 18.80 29.56 -169.99 -5.03 13.77 16 4 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 7 C -0.46 -12.15 9.02 -37.85 -0.34 -12.49 16 8 H 0.08 1.92 7.85 -52.49 -0.41 1.50 16 9 C 0.10 2.66 5.55 -106.80 -0.59 2.06 16 10 C -0.21 -5.14 9.74 -39.26 -0.38 -5.52 16 11 C -0.08 -1.97 8.61 -39.79 -0.34 -2.31 16 12 C 0.00 -0.01 6.31 -83.57 -0.53 -0.54 16 13 N -0.65 -10.48 5.30 -9.74 -0.05 -10.53 16 14 C 0.50 7.79 7.66 -10.99 -0.08 7.71 16 15 O -0.53 -10.42 13.40 5.56 0.07 -10.35 16 16 C -0.12 -1.26 5.71 -27.88 -0.16 -1.42 16 17 C -0.09 -0.93 3.62 37.16 0.13 -0.80 16 18 S -0.11 -1.00 21.92 -107.50 -2.36 -3.36 16 19 C -0.08 -0.73 6.11 -39.05 -0.24 -0.97 16 20 C -0.12 -1.15 9.36 -39.37 -0.37 -1.52 16 21 C -0.09 -0.79 9.82 -39.58 -0.39 -1.18 16 22 C -0.04 -0.38 6.32 -39.46 -0.25 -0.63 16 23 Cl -0.07 -0.59 28.95 -51.86 -1.50 -2.09 16 24 C -0.09 -0.72 9.82 -39.58 -0.39 -1.11 16 25 C -0.09 -0.74 9.79 -39.37 -0.39 -1.13 16 26 C -0.12 -2.64 9.90 -39.79 -0.39 -3.04 16 27 C -0.14 -3.56 8.62 -39.26 -0.34 -3.90 16 28 H 0.28 6.58 8.30 -40.82 -0.34 6.24 16 29 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 30 H 0.11 2.43 6.22 -52.49 -0.33 2.11 16 31 H 0.40 4.85 8.82 -40.82 -0.36 4.49 16 32 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.10 1.11 7.72 -51.93 -0.40 0.71 16 35 H 0.10 1.07 7.69 -51.92 -0.40 0.67 16 36 H 0.14 1.31 5.88 -52.48 -0.31 1.00 16 37 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 38 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 39 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.13 3.43 6.13 -52.49 -0.32 3.11 16 LS Contribution 377.63 15.07 5.69 5.69 Total: -1.00 -29.76 377.63 -12.34 -42.10 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -4.62 Total: 10.15 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: -5.14 Total: -25.13 kcal Atomic # 7 Polarization: -31.33 SS G_CDS: 0.54 Total: -30.79 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.07 Total: -10.35 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Atomic # 16 Polarization: -1.00 SS G_CDS: -2.36 Total: -3.36 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.76 -12.34 -42.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000452275.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.332 kcal (2) G-P(sol) polarization free energy of solvation -29.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds