Wall clock time and date at job start Tue Mar 31 2020 07:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86803 * 119.99845 * 2 1 4 4 H 1.48507 * 109.46591 * 239.99639 * 3 2 1 5 5 H 1.48495 * 109.47217 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47281 * 119.99994 * 3 2 1 7 7 C 1.39900 * 119.99928 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00028 * 175.56516 * 7 2 1 9 9 C 1.41151 * 120.00080 * 355.56336 * 7 2 1 10 10 C 1.40871 * 120.16447 * 214.77817 * 9 7 2 11 11 C 1.36375 * 119.82929 * 180.02562 * 10 9 7 12 12 C 1.39479 * 120.16720 * 0.02562 * 11 10 9 13 13 N 1.39242 * 119.83674 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99734 * 35.28050 * 13 12 11 15 15 O 1.21281 * 119.99927 * 355.71353 * 14 13 12 16 16 C 1.50701 * 120.00005 * 175.71523 * 14 13 12 17 17 C 1.52999 * 109.47210 * 180.02562 * 16 14 13 18 18 S 1.81400 * 109.46900 * 180.02562 * 17 16 14 19 19 C 1.76203 * 102.99764 * 179.97438 * 18 17 16 20 20 C 1.38964 * 120.06821 * 359.72431 * 19 18 17 21 21 C 1.38081 * 119.93360 * 179.79311 * 20 19 18 22 22 C 1.38406 * 120.06683 * 0.47998 * 21 20 19 23 23 Cl 1.73594 * 119.93472 * 179.72764 * 22 21 20 24 24 C 1.38398 * 120.13345 * 359.74942 * 22 21 20 25 25 C 1.38093 * 120.06452 * 0.02562 * 24 22 21 26 26 C 1.39488 * 120.33284 * 0.25074 * 12 11 10 27 27 C 1.36371 * 120.16823 * 359.48946 * 26 12 11 28 28 H 0.97005 * 119.99755 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.08270 * 0.02562 * 10 9 7 30 30 H 1.07996 * 119.91418 * 179.97438 * 11 10 9 31 31 H 0.96992 * 120.00070 * 215.28894 * 13 12 11 32 32 H 1.08994 * 109.46941 * 59.99916 * 16 14 13 33 33 H 1.09004 * 109.46714 * 300.00019 * 16 14 13 34 34 H 1.08997 * 109.47340 * 59.99423 * 17 16 14 35 35 H 1.09004 * 109.46938 * 299.99442 * 17 16 14 36 36 H 1.08003 * 120.03238 * 0.02562 * 20 19 18 37 37 H 1.07999 * 119.96784 * 180.20764 * 21 20 19 38 38 H 1.07997 * 119.96854 * 180.02562 * 24 22 21 39 39 H 1.08004 * 120.03039 * 179.97438 * 25 24 22 40 40 H 1.08002 * 119.91436 * 179.74513 * 26 12 11 41 41 H 1.07997 * 120.08478 * 180.25452 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.0965 1.6963 -1.2125 5 1 1.2777 2.7465 -0.0006 6 1 3.0964 1.6965 1.2124 7 6 2.0082 -1.2116 0.0005 8 1 3.0858 -1.2130 -0.0718 9 6 1.3056 -2.4321 0.0956 10 6 1.8649 -3.5180 0.7975 11 6 1.1804 -4.6942 0.8847 12 6 -0.0702 -4.8239 0.2806 13 7 -0.7628 -6.0282 0.3735 14 6 -0.6810 -6.7677 1.4973 15 8 0.0562 -6.4241 2.3969 16 6 -1.5055 -8.0215 1.6360 17 6 -1.2283 -8.6665 2.9954 18 16 -2.2203 -10.1761 3.1619 19 6 -1.7745 -10.7689 4.7602 20 6 -0.8489 -10.0725 5.5280 21 6 -0.5048 -10.5372 6.7819 22 6 -1.0733 -11.7008 7.2702 23 17 -0.6330 -12.2857 8.8442 24 6 -1.9919 -12.3991 6.5061 25 6 -2.3435 -11.9368 5.2532 26 6 -0.6278 -3.7550 -0.4209 27 6 0.0424 -2.5709 -0.5122 28 1 -0.4850 0.8401 -0.0004 29 1 2.8333 -3.4191 1.2653 30 1 1.6080 -5.5277 1.4220 31 1 -1.3041 -6.3350 -0.3706 32 1 -1.2417 -8.7196 0.8416 33 1 -2.5637 -7.7704 1.5624 34 1 -1.4924 -7.9682 3.7895 35 1 -0.1701 -8.9175 3.0693 36 1 -0.4019 -9.1666 5.1458 37 1 0.2119 -9.9946 7.3803 38 1 -2.4342 -13.3065 6.8899 39 1 -3.0600 -12.4825 4.6572 40 1 -1.5948 -3.8642 -0.8895 41 1 -0.3925 -1.7429 -1.0522 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000452275.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:50 Heat of formation + Delta-G solvation = -17.433551 kcal Electronic energy + Delta-G solvation = -24672.555409 eV Core-core repulsion = 20861.085036 eV Total energy + Delta-G solvation = -3811.470374 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 361.064 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.24966 -40.14160 -39.12680 -37.45790 -36.20886 -34.75464 -34.07034 -32.18121 -31.84536 -31.48762 -30.73470 -27.37095 -25.61861 -23.85463 -23.79111 -23.22437 -22.44678 -21.09908 -19.28808 -18.92436 -18.44392 -18.02163 -17.47086 -17.03318 -16.90308 -16.51577 -15.88907 -15.73733 -15.48911 -15.34438 -14.78471 -14.66872 -14.62759 -14.49791 -14.26699 -13.99917 -13.63907 -13.40503 -13.17816 -12.97732 -12.88938 -12.82994 -12.76817 -12.56695 -12.48282 -12.40705 -11.87644 -11.79890 -11.39979 -11.31561 -11.21670 -10.81109 -10.59089 -10.53218 -10.17972 -9.47108 -8.73547 -8.51129 -8.43594 -6.33887 -0.09858 0.18369 0.32011 0.79131 1.08895 1.13436 1.28138 1.39040 1.45606 1.50694 1.78200 2.23283 2.40594 2.44803 2.80185 3.54666 3.66884 3.68613 3.79969 3.84491 3.94711 4.16548 4.28416 4.39396 4.44477 4.48531 4.55301 4.63856 4.78952 4.84920 4.93750 4.94818 5.10342 5.13754 5.14716 5.15118 5.34152 5.43419 5.60310 5.69193 5.90379 6.01870 6.13245 6.38878 6.66296 6.72118 6.96145 6.99529 7.37969 8.41324 Molecular weight = 361.06amu Principal moments of inertia in cm(-1) A = 0.017853 B = 0.001527 C = 0.001434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.001967 B =18328.376054 C =19519.715775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.028 3.972 3 Si 0.987 3.013 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.500 4.500 8 H 0.072 0.928 9 C 0.066 3.934 10 C -0.222 4.222 11 C -0.097 4.097 12 C 0.021 3.979 13 N -0.643 5.643 14 C 0.503 3.497 15 O -0.575 6.575 16 C -0.109 4.109 17 C -0.093 4.093 18 S -0.084 6.084 19 C -0.094 4.094 20 C -0.133 4.133 21 C -0.098 4.098 22 C -0.051 4.051 23 Cl -0.069 7.069 24 C -0.090 4.090 25 C -0.091 4.091 26 C -0.119 4.119 27 C -0.159 4.159 28 H 0.285 0.715 29 H 0.094 0.906 30 H 0.109 0.891 31 H 0.420 0.580 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.133 0.867 37 H 0.143 0.857 38 H 0.160 0.840 39 H 0.157 0.843 40 H 0.126 0.874 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.509 -23.519 7.431 26.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.184 4.184 3 Si 0.808 3.192 4 H -0.182 1.182 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.530 4.530 8 H 0.090 0.910 9 C 0.064 3.936 10 C -0.242 4.242 11 C -0.117 4.117 12 C -0.073 4.073 13 N -0.288 5.288 14 C 0.290 3.710 15 O -0.455 6.455 16 C -0.150 4.150 17 C -0.242 4.242 18 S 0.162 5.838 19 C -0.207 4.207 20 C -0.157 4.157 21 C -0.118 4.118 22 C -0.080 4.080 23 Cl -0.040 7.040 24 C -0.111 4.111 25 C -0.114 4.114 26 C -0.139 4.139 27 C -0.179 4.179 28 H 0.095 0.905 29 H 0.112 0.888 30 H 0.127 0.873 31 H 0.258 0.742 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.150 0.850 37 H 0.161 0.839 38 H 0.178 0.822 39 H 0.175 0.825 40 H 0.144 0.856 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.970 -23.597 7.287 26.275 hybrid contribution 1.343 1.464 1.011 2.229 sum -7.627 -22.133 8.298 24.837 Atomic orbital electron populations 1.69816 1.08525 1.30016 1.38520 1.26719 0.95822 1.04244 0.91590 0.85174 0.78531 0.75671 0.79813 1.18217 1.19200 1.19094 1.19703 0.94835 0.91412 1.47076 0.90996 1.18046 0.93453 0.92688 0.89459 1.20931 1.01610 0.95644 1.06024 1.20522 0.93775 0.97384 1.00054 1.17319 0.93445 0.87488 1.09053 1.42908 1.48542 1.19728 1.17632 1.21212 0.82758 0.85842 0.81144 1.90695 1.41117 1.72162 1.41485 1.21304 1.02280 0.93656 0.97784 1.23359 1.02822 0.96880 1.01156 1.85180 1.56242 1.27499 1.14886 1.22062 1.00554 0.99382 0.98742 1.21318 0.98633 1.00852 0.94865 1.21134 0.99862 0.95116 0.95695 1.21080 1.01069 0.97235 0.88660 1.98376 1.92164 1.88153 1.25335 1.21257 0.96023 1.00439 0.93338 1.20986 1.00267 0.94525 0.95663 1.20585 0.99369 0.92124 1.01790 1.21172 0.97445 0.96544 1.02737 0.90461 0.88780 0.87262 0.74195 0.84963 0.85327 0.89555 0.89203 0.84971 0.83905 0.82208 0.82501 0.85572 0.86403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.25 10.60 21.82 0.23 -44.02 16 2 C 0.03 1.44 5.42 85.24 0.46 1.91 16 3 Si 0.99 39.11 29.56 68.60 2.03 41.13 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 6 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 7 C -0.50 -27.47 9.02 23.39 0.21 -27.26 16 8 H 0.07 3.82 7.85 -2.91 -0.02 3.80 16 9 C 0.07 3.62 5.55 -21.28 -0.12 3.50 16 10 C -0.22 -11.49 9.74 22.48 0.22 -11.27 16 11 C -0.10 -4.59 8.61 22.13 0.19 -4.40 16 12 C 0.02 0.86 6.31 38.57 0.24 1.10 16 13 N -0.64 -19.19 5.30 -303.10 -1.61 -20.80 16 14 C 0.50 14.57 7.66 87.66 0.67 15.24 16 15 O -0.57 -22.31 13.40 -3.03 -0.04 -22.35 16 16 C -0.11 -1.86 5.71 29.85 0.17 -1.69 16 17 C -0.09 -1.76 3.62 71.98 0.26 -1.50 16 18 S -0.08 -1.35 21.92 -56.49 -1.24 -2.58 16 19 C -0.09 -1.65 6.11 22.62 0.14 -1.51 16 20 C -0.13 -2.50 9.36 22.41 0.21 -2.29 16 21 C -0.10 -1.73 9.82 22.27 0.22 -1.51 16 22 C -0.05 -0.83 6.32 22.35 0.14 -0.69 16 23 Cl -0.07 -1.07 28.95 -2.72 -0.08 -1.15 16 24 C -0.09 -1.22 9.82 22.27 0.22 -1.00 16 25 C -0.09 -1.28 9.79 22.41 0.22 -1.06 16 26 C -0.12 -5.15 9.90 22.14 0.22 -4.93 16 27 C -0.16 -8.19 8.62 22.48 0.19 -7.99 16 28 H 0.28 13.64 8.30 -92.70 -0.77 12.87 16 29 H 0.09 4.71 8.06 -2.91 -0.02 4.69 16 30 H 0.11 5.05 6.22 -2.91 -0.02 5.04 16 31 H 0.42 8.71 8.82 -92.71 -0.82 7.89 16 32 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.09 1.87 7.72 -2.39 -0.02 1.85 16 35 H 0.09 1.87 7.69 -2.39 -0.02 1.85 16 36 H 0.13 2.57 5.88 -2.91 -0.02 2.56 16 37 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 38 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 39 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 40 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 41 H 0.12 6.34 6.13 -2.91 -0.02 6.33 16 Total: -1.00 -67.14 377.63 3.43 -63.72 By element: Atomic # 1 Polarization: 31.14 SS G_CDS: 0.27 Total: 31.41 kcal Atomic # 6 Polarization: -49.23 SS G_CDS: 3.87 Total: -45.36 kcal Atomic # 7 Polarization: -63.44 SS G_CDS: -1.38 Total: -64.82 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.04 Total: -22.35 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.13 kcal Atomic # 16 Polarization: -1.35 SS G_CDS: -1.24 Total: -2.58 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -0.08 Total: -1.15 kcal Total: -67.14 3.43 -63.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000452275.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.283 kcal (2) G-P(sol) polarization free energy of solvation -67.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds