Wall clock time and date at job start Tue Mar 31 2020 07:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 119.99875 * 2 1 4 4 H 1.48501 * 109.47032 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47296 * 300.00113 * 3 2 1 6 6 H 1.48500 * 109.47054 * 60.00216 * 3 2 1 7 7 C 1.37879 * 120.00329 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00206 * 188.44664 * 7 2 1 9 9 C 1.50698 * 119.99568 * 8.44573 * 7 2 1 10 10 H 1.09007 * 109.47127 * 185.49570 * 9 7 2 11 11 O 1.45199 * 109.47528 * 305.49323 * 9 7 2 12 12 C 1.34711 * 117.00291 * 270.00587 * 11 9 7 13 13 O 1.21470 * 119.99878 * 359.97438 * 12 11 9 14 14 C 1.47730 * 120.00166 * 179.97438 * 12 11 9 15 15 C 1.39626 * 120.14902 * 180.02562 * 14 12 11 16 16 C 1.37939 * 119.84445 * 180.02562 * 15 14 12 17 17 C 1.38361 * 120.15359 * 359.97438 * 16 15 14 18 18 N 1.48015 * 119.84992 * 179.97438 * 17 16 15 19 19 O 1.21802 * 119.99937 * 359.97438 * 18 17 16 20 20 O 1.21800 * 120.00251 * 179.72320 * 18 17 16 21 21 C 1.38368 * 120.30536 * 0.25594 * 17 16 15 22 22 C 1.37950 * 120.14235 * 359.48705 * 21 17 16 23 23 C 1.50701 * 109.47395 * 65.49850 * 9 7 2 24 24 C 1.38260 * 119.99559 * 89.40588 * 23 9 7 25 25 C 1.38221 * 120.02501 * 180.02562 * 24 23 9 26 26 C 1.38231 * 120.01570 * 359.97438 * 25 24 23 27 27 C 1.38334 * 119.98616 * 0.02562 * 26 25 24 28 28 Cl 1.73598 * 120.01256 * 180.02562 * 27 26 25 29 29 C 1.38195 * 119.99020 * 269.12848 * 23 9 7 30 30 H 0.97006 * 120.00301 * 359.97438 * 1 2 3 31 31 H 1.08003 * 120.07595 * 359.97438 * 15 14 12 32 32 H 1.08010 * 119.92431 * 179.97438 * 16 15 14 33 33 H 1.07998 * 119.92739 * 179.74778 * 21 17 16 34 34 H 1.08003 * 120.06854 * 180.23419 * 22 21 17 35 35 H 1.07993 * 119.98859 * 359.97438 * 24 23 9 36 36 H 1.07999 * 119.99090 * 180.02562 * 25 24 23 37 37 H 1.07999 * 120.00713 * 180.02562 * 26 25 24 38 38 H 1.07999 * 120.00662 * 0.02786 * 29 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0757 -1.1991 0.1368 9 6 1.2633 -2.4919 -0.1928 10 1 1.9532 -3.3265 -0.0669 11 8 0.1988 -2.5916 0.7897 12 6 0.5035 -3.1763 1.9644 13 8 1.6276 -3.5919 2.1624 14 6 -0.5293 -3.3120 3.0119 15 6 -0.2167 -3.9170 4.2308 16 6 -1.1862 -4.0410 5.2042 17 6 -2.4657 -3.5669 4.9751 18 7 -3.5009 -3.7039 6.0242 19 8 -3.2256 -4.2334 7.0860 20 8 -4.6268 -3.2831 5.8274 21 6 -2.7836 -2.9706 3.7677 22 6 -1.8224 -2.8354 2.7875 23 6 0.6731 -2.5329 -1.5788 24 6 1.4087 -3.0515 -2.6283 25 6 0.8682 -3.0889 -3.8999 26 6 -0.4085 -2.6082 -4.1230 27 6 -1.1450 -2.0891 -3.0733 28 17 -2.7487 -1.4858 -3.3526 29 6 -0.6055 -2.0572 -1.7995 30 1 -0.4851 0.8401 0.0004 31 1 0.7815 -4.2879 4.4107 32 1 -0.9459 -4.5091 6.1474 33 1 -3.7854 -2.6064 3.5939 34 1 -2.0708 -2.3663 1.8470 35 1 2.4064 -3.4268 -2.4547 36 1 1.4432 -3.4945 -4.7192 37 1 -0.8308 -2.6378 -5.1165 38 1 -1.1816 -1.6559 -0.9789 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000494572.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:17 Heat of formation + Delta-G solvation = -40.861490 kcal Electronic energy + Delta-G solvation = -28844.575493 eV Core-core repulsion = 24453.503242 eV Total energy + Delta-G solvation = -4391.072251 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 361.060 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.25087 -40.11484 -38.96761 -38.27678 -36.64480 -36.05328 -35.53843 -33.22484 -32.22705 -31.53464 -30.92593 -30.03609 -27.58335 -26.85806 -24.03098 -23.14825 -23.06540 -22.01217 -20.95493 -20.28010 -19.43104 -18.73563 -17.71053 -17.60812 -16.96951 -16.61592 -15.84110 -15.37838 -15.03979 -14.96907 -14.77080 -14.66534 -14.29732 -13.97322 -13.69339 -13.34182 -13.04597 -12.95910 -12.68029 -12.54557 -11.88129 -11.68908 -11.51060 -11.41693 -11.27159 -11.21753 -11.19018 -11.06123 -10.87504 -10.83215 -10.50122 -10.34527 -9.97230 -9.83622 -9.66432 -9.52285 -9.31476 -8.89114 -8.10530 -7.98657 -6.44525 -4.61528 -0.41729 0.86248 1.09051 1.29898 1.81556 2.02533 2.69724 2.71558 3.05777 3.17548 3.20566 3.30381 3.63672 4.09951 4.26695 4.34710 4.36003 4.69911 4.79009 4.85820 5.07636 5.19369 5.37708 5.50714 5.51416 5.65593 5.71113 5.80456 5.99744 6.09426 6.11981 6.21721 6.32099 6.37272 6.43194 6.68343 6.93387 6.97296 7.29316 7.43979 7.51165 7.55786 7.58549 7.65030 8.33584 8.63150 9.11605 10.54702 Molecular weight = 361.06amu Principal moments of inertia in cm(-1) A = 0.009465 B = 0.003195 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2957.597196 B = 8762.650425 C = 9803.824613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.084 3.916 3 Si 0.895 3.105 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.540 4.540 8 H 0.074 0.926 9 C 0.247 3.753 10 H 0.055 0.945 11 O -0.317 6.317 12 C 0.497 3.503 13 O -0.512 6.512 14 C -0.052 4.052 15 C -0.066 4.066 16 C -0.069 4.069 17 C -0.030 4.030 18 N 0.029 4.971 19 O -0.163 6.163 20 O -0.159 6.159 21 C -0.068 4.068 22 C -0.057 4.057 23 C -0.028 4.028 24 C -0.119 4.119 25 C -0.123 4.123 26 C -0.136 4.136 27 C -0.046 4.046 28 Cl -0.095 7.095 29 C -0.061 4.061 30 H 0.268 0.732 31 H 0.159 0.841 32 H 0.157 0.843 33 H 0.158 0.842 34 H 0.169 0.831 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.606 -5.930 0.552 6.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.125 4.125 3 Si 0.721 3.279 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.206 1.206 7 C -0.576 4.576 8 H 0.092 0.908 9 C 0.195 3.805 10 H 0.073 0.927 11 O -0.231 6.231 12 C 0.340 3.660 13 O -0.404 6.404 14 C -0.053 4.053 15 C -0.085 4.085 16 C -0.088 4.088 17 C -0.113 4.113 18 N 0.548 4.452 19 O -0.379 6.379 20 O -0.376 6.376 21 C -0.087 4.087 22 C -0.076 4.076 23 C -0.029 4.029 24 C -0.137 4.137 25 C -0.142 4.142 26 C -0.155 4.155 27 C -0.072 4.072 28 Cl -0.067 7.067 29 C -0.080 4.080 30 H 0.078 0.922 31 H 0.177 0.823 32 H 0.175 0.825 33 H 0.176 0.824 34 H 0.187 0.813 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -3.079 -5.794 0.013 6.561 hybrid contribution 0.169 1.213 0.125 1.231 sum -2.910 -4.581 0.138 5.429 Atomic orbital electron populations 1.69900 1.05978 1.27415 1.44122 1.25039 0.94931 0.99621 0.92894 0.86476 0.80545 0.82806 0.78063 1.19318 1.20349 1.20604 1.21313 0.94567 0.89586 1.52130 0.90785 1.19327 0.83250 0.97692 0.80240 0.92665 1.86714 1.45536 1.68087 1.22810 1.20628 0.86242 0.75471 0.83612 1.90757 1.22205 1.47015 1.80404 1.20079 0.93990 0.97378 0.93896 1.21343 1.00276 0.96243 0.90617 1.20935 0.89707 0.97158 1.01034 1.21358 0.89413 1.10131 0.90393 1.43674 1.01849 0.98037 1.01659 1.94526 1.86556 1.43508 1.13269 1.94540 1.06775 1.50215 1.86053 1.21090 1.02062 0.95442 0.90061 1.21741 0.90612 0.95285 0.99961 1.19926 0.92693 0.94424 0.95882 1.20899 0.99826 1.00478 0.92489 1.20785 0.94960 1.01653 0.96753 1.20783 0.95108 1.01909 0.97697 1.21021 0.86669 1.03638 0.95908 1.98309 1.24548 1.87197 1.96626 1.21402 0.95742 0.95451 0.95371 0.92161 0.82294 0.82491 0.82416 0.81326 0.86297 0.86243 0.86441 0.82220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -19.83 9.56 55.43 0.53 -19.30 16 2 C 0.08 2.01 5.22 -17.82 -0.09 1.92 16 3 Si 0.89 19.24 29.55 -169.99 -5.02 14.21 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -13.09 8.87 -34.44 -0.31 -13.39 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 C 0.25 5.44 2.40 -29.04 -0.07 5.37 16 10 H 0.06 1.22 7.11 -51.92 -0.37 0.85 16 11 O -0.32 -6.64 6.96 -40.52 -0.28 -6.92 16 12 C 0.50 9.58 7.87 34.61 0.27 9.85 16 13 O -0.51 -10.85 15.61 -19.24 -0.30 -11.15 16 14 C -0.05 -0.78 5.87 -104.98 -0.62 -1.40 16 15 C -0.07 -0.83 9.60 -39.17 -0.38 -1.21 16 16 C -0.07 -0.79 9.54 -39.65 -0.38 -1.17 16 17 C -0.03 -0.38 6.86 -79.86 -0.55 -0.93 16 18 N 0.03 0.40 4.45 34.01 0.15 0.55 16 19 O -0.16 -2.32 18.43 -29.46 -0.54 -2.86 16 20 O -0.16 -2.31 18.43 -29.46 -0.54 -2.86 16 21 C -0.07 -0.81 9.54 -39.64 -0.38 -1.19 16 22 C -0.06 -0.77 9.62 -39.17 -0.38 -1.15 16 23 C -0.03 -0.58 4.83 -104.63 -0.51 -1.08 16 24 C -0.12 -2.12 9.70 -39.58 -0.38 -2.50 16 25 C -0.12 -1.94 10.05 -39.59 -0.40 -2.33 16 26 C -0.14 -2.20 9.83 -39.55 -0.39 -2.59 16 27 C -0.05 -0.83 6.32 -39.50 -0.25 -1.08 16 28 Cl -0.10 -1.55 28.96 -51.86 -1.50 -3.06 16 29 C -0.06 -1.22 7.86 -39.55 -0.31 -1.53 16 30 H 0.27 6.14 8.31 -40.82 -0.34 5.80 16 31 H 0.16 1.84 7.65 -52.48 -0.40 1.44 16 32 H 0.16 1.45 7.60 -52.48 -0.40 1.05 16 33 H 0.16 1.63 7.60 -52.49 -0.40 1.23 16 34 H 0.17 2.31 7.61 -52.48 -0.40 1.91 16 35 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 36 H 0.12 1.50 8.06 -52.49 -0.42 1.07 16 37 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 38 H 0.16 3.43 5.99 -52.49 -0.31 3.12 16 LS Contribution 361.09 15.07 5.44 5.44 Total: -1.00 -26.18 361.09 -10.27 -36.45 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -3.10 Total: 3.91 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -5.10 Total: -14.42 kcal Atomic # 7 Polarization: -19.43 SS G_CDS: 0.68 Total: -18.75 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -1.67 Total: -23.79 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.02 Total: 14.21 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -1.50 Total: -3.06 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -26.18 -10.27 -36.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000494572.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.413 kcal (2) G-P(sol) polarization free energy of solvation -26.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds