Wall clock time and date at job start Tue Mar 31 2020 07:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99966 * 2 1 4 4 H 1.48502 * 109.46942 * 269.99667 * 3 2 1 5 5 H 1.48500 * 109.47117 * 29.99698 * 3 2 1 6 6 H 1.48492 * 109.47442 * 149.99923 * 3 2 1 7 7 C 1.37881 * 119.99657 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99486 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00086 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47066 * 179.97438 * 9 7 2 11 11 O 1.45199 * 109.47080 * 60.00452 * 9 7 2 12 12 C 1.34705 * 117.00434 * 89.99876 * 11 9 7 13 13 O 1.21470 * 119.99965 * 359.97438 * 12 11 9 14 14 C 1.47726 * 120.00320 * 179.97438 * 12 11 9 15 15 C 1.39631 * 120.15220 * 179.97438 * 14 12 11 16 16 C 1.37942 * 119.84621 * 180.02562 * 15 14 12 17 17 C 1.38367 * 120.15190 * 0.02562 * 16 15 14 18 18 N 1.48020 * 119.84785 * 179.97438 * 17 16 15 19 19 O 1.21803 * 119.99894 * 359.97438 * 18 17 16 20 20 O 1.21799 * 119.99903 * 179.72403 * 18 17 16 21 21 C 1.38365 * 120.30270 * 0.24919 * 17 16 15 22 22 C 1.37945 * 120.15113 * 359.49762 * 21 17 16 23 23 C 1.50693 * 109.47309 * 300.00073 * 9 7 2 24 24 C 1.38260 * 119.99804 * 84.72526 * 23 9 7 25 25 C 1.38216 * 120.03199 * 179.76754 * 24 23 9 26 26 C 1.38239 * 120.00941 * 0.50964 * 25 24 23 27 27 C 1.38334 * 119.98735 * 359.74384 * 26 25 24 28 28 Cl 1.73601 * 120.01082 * 180.02562 * 27 26 25 29 29 C 1.38195 * 119.99252 * 265.00111 * 23 9 7 30 30 H 0.97001 * 120.00111 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.07510 * 359.97438 * 15 14 12 32 32 H 1.07998 * 119.92143 * 179.97438 * 16 15 14 33 33 H 1.07999 * 119.92169 * 179.74829 * 21 17 16 34 34 H 1.07997 * 120.07773 * 180.23196 * 22 21 17 35 35 H 1.08005 * 119.98216 * 0.02562 * 24 23 9 36 36 H 1.08000 * 119.99637 * 180.25595 * 25 24 23 37 37 H 1.08005 * 120.00747 * 179.72604 * 26 25 24 38 38 H 1.08003 * 120.01100 * 0.02562 * 29 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 1.9592 -3.3277 0.0005 11 8 0.4167 -2.5763 -1.1854 12 6 0.9657 -3.1287 -2.2845 13 8 2.1102 -3.5344 -2.2533 14 6 0.1759 -3.2411 -3.5278 15 6 0.7421 -3.8127 -4.6691 16 6 -0.0010 -3.9140 -5.8268 17 6 -1.3043 -3.4503 -5.8591 18 7 -2.0953 -3.5619 -7.1052 19 8 -1.5985 -4.0606 -8.0993 20 8 -3.2444 -3.1593 -7.1352 21 6 -1.8696 -2.8777 -4.7334 22 6 -1.1396 -2.7748 -3.5675 23 6 0.3841 -2.5787 1.2306 24 6 -0.8715 -1.9999 1.2300 25 6 -1.6691 -2.0766 2.3562 26 6 -1.2076 -2.7231 3.4876 27 6 0.0507 -3.2978 3.4906 28 17 0.6307 -4.1104 4.9109 29 6 0.8466 -3.2252 2.3610 30 1 -0.4850 0.8400 -0.0004 31 1 1.7596 -4.1738 -4.6456 32 1 0.4358 -4.3555 -6.7104 33 1 -2.8860 -2.5142 -4.7666 34 1 -1.5833 -2.3311 -2.6885 35 1 -1.2310 -1.4913 0.3476 36 1 -2.6515 -1.6279 2.3537 37 1 -1.8291 -2.7791 4.3691 38 1 1.8294 -3.6731 2.3632 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000000494573.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:21 Heat of formation + Delta-G solvation = -37.227998 kcal Electronic energy + Delta-G solvation = -28668.073418 eV Core-core repulsion = 24277.158728 eV Total energy + Delta-G solvation = -4390.914691 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 361.060 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.29132 -40.17063 -38.96772 -38.26486 -36.68423 -36.13379 -35.53933 -33.33587 -32.28861 -31.59014 -30.97302 -29.77493 -27.64453 -26.92246 -24.06761 -23.20315 -23.05483 -21.90640 -21.00042 -20.30492 -19.48055 -18.77536 -17.75492 -17.64732 -17.04880 -16.61214 -15.86862 -15.42473 -15.08589 -15.02762 -14.82389 -14.54566 -14.25134 -14.02799 -13.68887 -13.35741 -13.12007 -12.95103 -12.66581 -12.57783 -11.96058 -11.73618 -11.57430 -11.40637 -11.31286 -11.25467 -11.23089 -11.07137 -10.81214 -10.60068 -10.57164 -10.50760 -10.03342 -9.76727 -9.71044 -9.58002 -9.25027 -9.05359 -8.15378 -7.81759 -6.38838 -4.71175 -0.46721 0.80616 1.04134 1.25397 2.00343 2.03584 2.63621 2.65662 3.03008 3.12908 3.16622 3.27435 3.57097 4.04830 4.21224 4.29610 4.49576 4.64231 4.73168 4.79198 5.07024 5.13979 5.45856 5.49145 5.50658 5.59849 5.70909 5.94332 6.02801 6.06306 6.18719 6.21084 6.31978 6.37243 6.59724 6.64399 6.90819 7.19680 7.26692 7.48543 7.51650 7.58589 7.63497 7.79619 8.28651 8.56399 9.05172 10.45951 Molecular weight = 361.06amu Principal moments of inertia in cm(-1) A = 0.010672 B = 0.002801 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.072492 B = 9994.921909 C =11059.552421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.081 3.919 3 Si 0.901 3.099 4 H -0.276 1.276 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.529 4.529 8 H 0.074 0.926 9 C 0.246 3.754 10 H 0.054 0.946 11 O -0.327 6.327 12 C 0.497 3.503 13 O -0.509 6.509 14 C -0.053 4.053 15 C -0.065 4.065 16 C -0.068 4.068 17 C -0.030 4.030 18 N 0.028 4.972 19 O -0.162 6.162 20 O -0.159 6.159 21 C -0.067 4.067 22 C -0.060 4.060 23 C -0.037 4.037 24 C -0.043 4.043 25 C -0.138 4.138 26 C -0.129 4.129 27 C -0.053 4.053 28 Cl -0.101 7.101 29 C -0.111 4.111 30 H 0.269 0.731 31 H 0.160 0.840 32 H 0.158 0.842 33 H 0.159 0.841 34 H 0.169 0.831 35 H 0.171 0.829 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.245 -4.930 -3.180 7.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.126 4.126 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.565 4.565 8 H 0.092 0.908 9 C 0.195 3.805 10 H 0.072 0.928 11 O -0.242 6.242 12 C 0.340 3.660 13 O -0.401 6.401 14 C -0.055 4.055 15 C -0.084 4.084 16 C -0.087 4.087 17 C -0.113 4.113 18 N 0.548 4.452 19 O -0.378 6.378 20 O -0.375 6.375 21 C -0.086 4.086 22 C -0.078 4.078 23 C -0.038 4.038 24 C -0.062 4.062 25 C -0.157 4.157 26 C -0.148 4.148 27 C -0.079 4.079 28 Cl -0.073 7.073 29 C -0.130 4.130 30 H 0.080 0.920 31 H 0.178 0.822 32 H 0.176 0.824 33 H 0.176 0.824 34 H 0.186 0.814 35 H 0.188 0.812 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.619 -4.909 -2.379 6.546 hybrid contribution 0.467 1.016 0.042 1.119 sum -3.152 -3.893 -2.337 5.527 Atomic orbital electron populations 1.69726 1.05976 1.27069 1.45587 1.25092 0.95003 0.99863 0.92609 0.86422 0.80183 0.82051 0.78598 1.20167 1.20581 1.19374 1.21380 0.93669 0.89493 1.51942 0.90819 1.19316 0.86562 0.97581 0.77065 0.92767 1.86704 1.47657 1.69596 1.20242 1.20641 0.85177 0.75435 0.84781 1.90766 1.18253 1.46356 1.84688 1.20095 0.94406 0.97568 0.93398 1.21356 1.01098 0.96182 0.89778 1.20951 0.90842 0.96978 0.99968 1.21365 0.93819 1.10348 0.85737 1.43671 1.01074 0.97998 1.02499 1.94531 1.73905 1.44630 1.24717 1.94540 1.01990 1.50262 1.90745 1.21083 1.01884 0.95517 0.90145 1.21720 0.92558 0.95429 0.98123 1.19715 0.94445 0.94901 0.94717 1.21994 0.92484 0.91858 0.99844 1.21141 1.00085 1.00776 0.93706 1.20797 0.94491 1.00452 0.99032 1.20548 0.96054 1.03119 0.88188 1.98301 1.89234 1.78898 1.40853 1.20656 0.99379 1.01042 0.91959 0.91998 0.82242 0.82436 0.82378 0.81390 0.81248 0.86588 0.86711 0.86239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -19.28 8.51 55.43 0.47 -18.81 16 2 C 0.08 1.91 5.24 -17.82 -0.09 1.81 16 3 Si 0.90 18.95 29.54 -169.99 -5.02 13.93 16 4 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 6 H -0.27 -5.75 7.11 56.52 0.40 -5.34 16 7 C -0.53 -12.77 8.91 -34.44 -0.31 -13.08 16 8 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 9 C 0.25 5.44 2.42 -29.04 -0.07 5.37 16 10 H 0.05 1.21 7.07 -51.93 -0.37 0.85 16 11 O -0.33 -6.69 7.69 -40.50 -0.31 -7.01 16 12 C 0.50 9.31 7.87 34.61 0.27 9.59 16 13 O -0.51 -10.63 15.61 -19.24 -0.30 -10.93 16 14 C -0.05 -0.77 5.87 -104.98 -0.62 -1.38 16 15 C -0.07 -0.79 9.60 -39.17 -0.38 -1.17 16 16 C -0.07 -0.74 9.54 -39.64 -0.38 -1.12 16 17 C -0.03 -0.36 6.86 -79.85 -0.55 -0.91 16 18 N 0.03 0.38 4.45 34.01 0.15 0.53 16 19 O -0.16 -2.24 18.43 -29.46 -0.54 -2.78 16 20 O -0.16 -2.22 18.43 -29.46 -0.54 -2.76 16 21 C -0.07 -0.76 9.54 -39.64 -0.38 -1.14 16 22 C -0.06 -0.75 9.62 -39.17 -0.38 -1.13 16 23 C -0.04 -0.76 4.81 -104.63 -0.50 -1.27 16 24 C -0.04 -0.84 7.46 -39.58 -0.30 -1.14 16 25 C -0.14 -2.40 10.05 -39.59 -0.40 -2.80 16 26 C -0.13 -2.16 9.83 -39.55 -0.39 -2.55 16 27 C -0.05 -0.94 6.32 -39.50 -0.25 -1.19 16 28 Cl -0.10 -1.58 28.96 -51.86 -1.50 -3.08 16 29 C -0.11 -2.15 9.47 -39.55 -0.37 -2.52 16 30 H 0.27 5.88 8.31 -40.82 -0.34 5.54 16 31 H 0.16 1.77 7.65 -52.49 -0.40 1.37 16 32 H 0.16 1.38 7.60 -52.49 -0.40 0.98 16 33 H 0.16 1.50 7.60 -52.49 -0.40 1.10 16 34 H 0.17 2.08 7.61 -52.49 -0.40 1.68 16 35 H 0.17 3.50 5.50 -52.48 -0.29 3.21 16 36 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 38 H 0.12 2.19 8.06 -52.48 -0.42 1.77 16 LS Contribution 359.64 15.07 5.42 5.42 Total: -1.00 -25.59 359.64 -10.32 -35.91 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -3.07 Total: 4.20 kcal Atomic # 6 Polarization: -9.54 SS G_CDS: -5.08 Total: -14.62 kcal Atomic # 7 Polarization: -18.90 SS G_CDS: 0.62 Total: -18.28 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: -1.70 Total: -23.48 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.93 kcal Atomic # 17 Polarization: -1.58 SS G_CDS: -1.50 Total: -3.08 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -25.59 -10.32 -35.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000494573.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.315 kcal (2) G-P(sol) polarization free energy of solvation -25.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds