Wall clock time and date at job start Tue Mar 31 2020 07:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99966 * 2 1 4 4 H 1.48502 * 109.46942 * 269.99667 * 3 2 1 5 5 H 1.48500 * 109.47117 * 29.99698 * 3 2 1 6 6 H 1.48492 * 109.47442 * 149.99923 * 3 2 1 7 7 C 1.37881 * 119.99657 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99486 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00086 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.47066 * 179.97438 * 9 7 2 11 11 O 1.45199 * 109.47080 * 60.00452 * 9 7 2 12 12 C 1.34705 * 117.00434 * 89.99876 * 11 9 7 13 13 O 1.21470 * 119.99965 * 359.97438 * 12 11 9 14 14 C 1.47726 * 120.00320 * 179.97438 * 12 11 9 15 15 C 1.39631 * 120.15220 * 179.97438 * 14 12 11 16 16 C 1.37942 * 119.84621 * 180.02562 * 15 14 12 17 17 C 1.38367 * 120.15190 * 0.02562 * 16 15 14 18 18 N 1.48020 * 119.84785 * 179.97438 * 17 16 15 19 19 O 1.21803 * 119.99894 * 359.97438 * 18 17 16 20 20 O 1.21799 * 119.99903 * 179.72403 * 18 17 16 21 21 C 1.38365 * 120.30270 * 0.24919 * 17 16 15 22 22 C 1.37945 * 120.15113 * 359.49762 * 21 17 16 23 23 C 1.50693 * 109.47309 * 300.00073 * 9 7 2 24 24 C 1.38260 * 119.99804 * 84.72526 * 23 9 7 25 25 C 1.38216 * 120.03199 * 179.76754 * 24 23 9 26 26 C 1.38239 * 120.00941 * 0.50964 * 25 24 23 27 27 C 1.38334 * 119.98735 * 359.74384 * 26 25 24 28 28 Cl 1.73601 * 120.01082 * 180.02562 * 27 26 25 29 29 C 1.38195 * 119.99252 * 265.00111 * 23 9 7 30 30 H 0.97001 * 120.00111 * 0.02562 * 1 2 3 31 31 H 1.08000 * 120.07510 * 359.97438 * 15 14 12 32 32 H 1.07998 * 119.92143 * 179.97438 * 16 15 14 33 33 H 1.07999 * 119.92169 * 179.74829 * 21 17 16 34 34 H 1.07997 * 120.07773 * 180.23196 * 22 21 17 35 35 H 1.08005 * 119.98216 * 0.02562 * 24 23 9 36 36 H 1.08000 * 119.99637 * 180.25595 * 25 24 23 37 37 H 1.08005 * 120.00747 * 179.72604 * 26 25 24 38 38 H 1.08003 * 120.01100 * 0.02562 * 29 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 1.9592 -3.3277 0.0005 11 8 0.4167 -2.5763 -1.1854 12 6 0.9657 -3.1287 -2.2845 13 8 2.1102 -3.5344 -2.2533 14 6 0.1759 -3.2411 -3.5278 15 6 0.7421 -3.8127 -4.6691 16 6 -0.0010 -3.9140 -5.8268 17 6 -1.3043 -3.4503 -5.8591 18 7 -2.0953 -3.5619 -7.1052 19 8 -1.5985 -4.0606 -8.0993 20 8 -3.2444 -3.1593 -7.1352 21 6 -1.8696 -2.8777 -4.7334 22 6 -1.1396 -2.7748 -3.5675 23 6 0.3841 -2.5787 1.2306 24 6 -0.8715 -1.9999 1.2300 25 6 -1.6691 -2.0766 2.3562 26 6 -1.2076 -2.7231 3.4876 27 6 0.0507 -3.2978 3.4906 28 17 0.6307 -4.1104 4.9109 29 6 0.8466 -3.2252 2.3610 30 1 -0.4850 0.8400 -0.0004 31 1 1.7596 -4.1738 -4.6456 32 1 0.4358 -4.3555 -6.7104 33 1 -2.8860 -2.5142 -4.7666 34 1 -1.5833 -2.3311 -2.6885 35 1 -1.2310 -1.4913 0.3476 36 1 -2.6515 -1.6279 2.3537 37 1 -1.8291 -2.7791 4.3691 38 1 1.8294 -3.6731 2.3632 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000000494573.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:16:20 Heat of formation + Delta-G solvation = -44.994208 kcal Electronic energy + Delta-G solvation = -28668.410186 eV Core-core repulsion = 24277.158728 eV Total energy + Delta-G solvation = -4391.251459 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 361.060 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.33087 -41.52273 -40.27420 -39.62811 -37.74157 -37.56710 -37.01739 -35.01706 -33.43304 -32.61575 -32.42979 -31.22717 -29.15788 -28.17970 -25.56527 -24.37812 -24.17147 -23.33672 -22.35112 -21.77630 -20.48781 -19.83343 -19.20327 -18.68194 -18.64375 -18.08689 -17.27449 -17.00719 -16.41954 -16.27463 -16.07742 -15.94132 -15.67047 -15.07449 -14.93339 -14.66678 -14.48102 -14.23037 -14.06890 -13.99697 -13.53304 -13.08405 -12.92260 -12.80386 -12.59753 -12.53739 -12.37695 -12.32662 -12.24741 -12.20247 -12.08333 -11.92130 -11.56262 -11.39257 -10.91419 -10.82893 -10.76469 -10.51695 -9.61213 -9.30305 -8.11796 -6.52675 -1.53590 -0.13814 -0.05778 0.22956 0.55294 0.59505 1.26638 1.34853 1.40097 1.41692 1.47574 1.88637 2.30800 2.36392 3.00788 3.04053 3.26078 3.38740 3.55372 3.71040 3.81176 4.10437 4.20270 4.23909 4.41435 4.55812 4.60068 4.62431 4.63181 4.77179 4.84194 4.97157 5.03428 5.13384 5.22145 5.31027 5.46289 5.52332 5.69747 5.84296 5.93954 6.12547 6.26917 6.43631 6.52608 6.95208 7.25324 8.69432 Molecular weight = 361.06amu Principal moments of inertia in cm(-1) A = 0.010672 B = 0.002801 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.072492 B = 9994.921909 C =11059.552421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.056 3.944 3 Si 0.945 3.055 4 H -0.277 1.277 5 H -0.272 1.272 6 H -0.278 1.278 7 C -0.561 4.561 8 H 0.052 0.948 9 C 0.250 3.750 10 H 0.035 0.965 11 O -0.331 6.331 12 C 0.491 3.509 13 O -0.540 6.540 14 C -0.072 4.072 15 C -0.058 4.058 16 C -0.054 4.054 17 C -0.032 4.032 18 N 0.028 4.972 19 O -0.165 6.165 20 O -0.169 6.169 21 C -0.056 4.056 22 C -0.055 4.055 23 C -0.057 4.057 24 C -0.054 4.054 25 C -0.133 4.133 26 C -0.122 4.122 27 C -0.057 4.057 28 Cl -0.081 7.081 29 C -0.126 4.126 30 H 0.273 0.727 31 H 0.168 0.832 32 H 0.184 0.816 33 H 0.180 0.820 34 H 0.168 0.832 35 H 0.159 0.841 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.959 -4.777 -3.155 8.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.151 4.151 3 Si 0.770 3.230 4 H -0.203 1.203 5 H -0.197 1.197 6 H -0.203 1.203 7 C -0.597 4.597 8 H 0.070 0.930 9 C 0.198 3.802 10 H 0.053 0.947 11 O -0.245 6.245 12 C 0.336 3.664 13 O -0.433 6.433 14 C -0.073 4.073 15 C -0.077 4.077 16 C -0.072 4.072 17 C -0.114 4.114 18 N 0.546 4.454 19 O -0.381 6.381 20 O -0.384 6.384 21 C -0.075 4.075 22 C -0.074 4.074 23 C -0.058 4.058 24 C -0.073 4.073 25 C -0.152 4.152 26 C -0.140 4.140 27 C -0.083 4.083 28 Cl -0.052 7.052 29 C -0.145 4.145 30 H 0.083 0.917 31 H 0.185 0.815 32 H 0.201 0.799 33 H 0.197 0.803 34 H 0.185 0.815 35 H 0.176 0.824 36 H 0.164 0.836 37 H 0.164 0.836 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.368 -4.758 -2.356 7.550 hybrid contribution 0.978 0.873 0.029 1.312 sum -4.390 -3.885 -2.327 6.307 Atomic orbital electron populations 1.69821 1.05964 1.27520 1.44890 1.25490 0.95826 1.01290 0.92491 0.85767 0.79054 0.79880 0.78284 1.20266 1.19671 1.20308 1.21401 0.92961 0.91157 1.54158 0.92988 1.19104 0.86880 0.95963 0.78269 0.94737 1.86662 1.47198 1.70145 1.20521 1.21366 0.85268 0.74304 0.85460 1.90737 1.19696 1.47663 1.85194 1.19905 0.95039 1.00269 0.92135 1.21416 1.01519 0.95491 0.89256 1.21142 0.90169 0.95820 1.00119 1.21522 0.94117 1.10421 0.85379 1.43798 1.01064 0.97793 1.02716 1.94530 1.73848 1.44610 1.25075 1.94544 1.02315 1.50606 1.90898 1.21203 1.02534 0.94588 0.89142 1.21657 0.91811 0.95210 0.98693 1.19705 0.95136 0.96490 0.94500 1.21909 0.92488 0.92372 1.00543 1.21433 1.00882 1.00054 0.92786 1.21150 0.94144 0.98924 0.99807 1.20683 0.96302 1.02952 0.88388 1.98306 1.89135 1.78436 1.39360 1.20725 0.99750 1.01519 0.92457 0.91677 0.81480 0.79891 0.80311 0.81460 0.82396 0.83607 0.83635 0.86501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -38.65 8.51 21.45 0.18 -38.47 16 2 C 0.06 2.66 5.24 84.66 0.44 3.10 16 3 Si 0.94 39.19 29.54 68.60 2.03 41.22 16 4 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.56 -28.34 8.91 25.60 0.23 -28.11 16 8 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 9 C 0.25 11.61 2.42 29.10 0.07 11.68 16 10 H 0.03 1.67 7.07 -2.39 -0.02 1.65 16 11 O -0.33 -14.09 7.69 -56.14 -0.43 -14.52 16 12 C 0.49 19.15 7.87 70.33 0.55 19.70 16 13 O -0.54 -23.69 15.61 19.93 0.31 -23.38 16 14 C -0.07 -2.08 5.87 -20.10 -0.12 -2.20 16 15 C -0.06 -1.35 9.60 22.54 0.22 -1.13 16 16 C -0.05 -1.05 9.54 22.23 0.21 -0.84 16 17 C -0.03 -0.69 6.86 36.44 0.25 -0.44 16 18 N 0.03 0.70 4.45 -46.31 -0.21 0.49 16 19 O -0.16 -4.18 18.43 18.88 0.35 -3.84 16 20 O -0.17 -4.39 18.43 18.89 0.35 -4.04 16 21 C -0.06 -1.15 9.54 22.23 0.21 -0.94 16 22 C -0.06 -1.34 9.62 22.54 0.22 -1.13 16 23 C -0.06 -2.44 4.81 -19.87 -0.10 -2.54 16 24 C -0.05 -2.12 7.46 22.27 0.17 -1.95 16 25 C -0.13 -4.33 10.05 22.26 0.22 -4.11 16 26 C -0.12 -3.77 9.83 22.29 0.22 -3.56 16 27 C -0.06 -1.94 6.32 22.32 0.14 -1.80 16 28 Cl -0.08 -2.39 28.96 -2.72 -0.08 -2.47 16 29 C -0.13 -4.92 9.47 22.29 0.21 -4.71 16 30 H 0.27 11.76 8.31 -92.71 -0.77 10.99 16 31 H 0.17 3.61 7.65 -2.91 -0.02 3.59 16 32 H 0.18 2.65 7.60 -2.91 -0.02 2.63 16 33 H 0.18 2.94 7.60 -2.91 -0.02 2.92 16 34 H 0.17 4.11 7.61 -2.91 -0.02 4.08 16 35 H 0.16 6.54 5.50 -2.91 -0.02 6.53 16 36 H 0.15 3.82 8.06 -2.91 -0.02 3.80 16 37 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 38 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -55.77 359.64 6.78 -48.99 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 1.14 Total: 14.98 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: 3.15 Total: -18.96 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: -0.02 Total: -37.98 kcal Atomic # 8 Polarization: -46.36 SS G_CDS: 0.58 Total: -45.78 kcal Atomic # 14 Polarization: 39.19 SS G_CDS: 2.03 Total: 41.22 kcal Atomic # 17 Polarization: -2.39 SS G_CDS: -0.08 Total: -2.47 kcal Total: -55.77 6.78 -48.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000000494573.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.994 kcal (2) G-P(sol) polarization free energy of solvation -55.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds