Wall clock time and date at job start Tue Mar 31 2020 06:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47021 * 123.83955 * 3 2 1 5 5 N 1.46496 * 109.47037 * 179.97438 * 4 3 2 6 6 C 1.46496 * 120.00148 * 270.00039 * 5 4 3 7 7 C 1.50704 * 109.47140 * 90.00437 * 6 5 4 8 8 H 1.07999 * 119.99784 * 359.97438 * 7 6 5 9 9 C 1.37868 * 120.00248 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00088 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00372 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47234 * 89.99426 * 11 9 7 13 13 H 1.48493 * 109.47269 * 209.99973 * 11 9 7 14 14 H 1.48504 * 109.46554 * 329.99692 * 11 9 7 15 15 C 1.38995 * 119.99609 * 90.00545 * 5 4 3 16 16 N 1.29574 * 125.40775 * 359.68965 * 15 5 4 17 17 N 1.37764 * 115.62816 * 179.79906 * 16 15 5 18 18 C 1.29649 * 115.60412 * 0.49905 * 17 16 15 19 19 S 1.76193 * 125.41298 * 179.71836 * 18 17 16 20 20 C 1.81397 * 103.00210 * 0.02643 * 19 18 17 21 21 C 1.50697 * 109.47441 * 179.97438 * 20 19 18 22 22 C 1.38237 * 120.00325 * 269.73132 * 21 20 19 23 23 C 1.38232 * 119.99659 * 179.76509 * 22 21 20 24 24 C 1.38233 * 120.00586 * 0.50796 * 23 22 21 25 25 C 1.38236 * 119.99533 * 359.74610 * 24 23 22 26 26 C 1.38230 * 120.00321 * 359.97438 * 25 24 23 27 27 S 1.76040 * 125.40168 * 179.97438 * 15 5 4 28 28 H 1.08996 * 109.47366 * 243.84392 * 3 2 1 29 29 H 1.09000 * 109.47090 * 3.84202 * 3 2 1 30 30 H 1.08996 * 109.47407 * 300.00412 * 4 3 2 31 31 H 1.09004 * 109.46733 * 59.99729 * 4 3 2 32 32 H 1.09000 * 109.47114 * 210.00248 * 6 5 4 33 33 H 1.08997 * 109.47404 * 330.00160 * 6 5 4 34 34 H 0.97005 * 120.00038 * 179.97438 * 10 9 7 35 35 H 1.08999 * 109.47743 * 300.00359 * 20 19 18 36 36 H 1.09006 * 109.46802 * 60.00002 * 20 19 18 37 37 H 1.08001 * 119.99599 * 359.97438 * 22 21 20 38 38 H 1.08003 * 119.99963 * 180.22866 * 23 22 21 39 39 H 1.07994 * 120.00520 * 179.72698 * 24 23 22 40 40 H 1.08006 * 119.99816 * 179.97438 * 25 24 23 41 41 H 1.08003 * 120.00305 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.8042 -1.1982 5 7 4.5826 0.8054 -1.1978 6 6 5.3141 1.8598 -0.4913 7 6 5.5654 1.4303 0.9312 8 1 5.2148 0.4683 1.2747 9 6 6.2418 2.2658 1.7943 10 7 6.6683 3.4376 1.3762 11 14 6.5527 1.7338 3.5578 12 1 7.8483 1.0122 3.6361 13 1 6.5989 2.9308 4.4352 14 1 5.4578 0.8350 4.0039 15 6 5.2784 -0.1940 -1.8680 16 7 4.7400 -1.1762 -2.5194 17 7 5.6222 -2.0519 -3.1134 18 6 6.8790 -1.7872 -2.9365 19 16 8.2214 -2.7352 -3.5718 20 6 7.3874 -4.0734 -4.4687 21 6 8.4182 -4.9862 -5.0812 22 6 8.8865 -4.7415 -6.3586 23 6 9.8356 -5.5761 -6.9185 24 6 10.3087 -6.6616 -6.2052 25 6 9.8365 -6.9093 -4.9298 26 6 8.8917 -6.0714 -4.3676 27 16 7.0311 -0.3300 -1.9604 28 1 2.9711 0.4538 0.9224 29 1 2.9718 -1.0245 -0.0689 30 1 2.7544 0.3510 -2.1205 31 1 2.7537 1.8294 -1.1293 32 1 6.2664 2.0384 -0.9905 33 1 4.7243 2.7764 -0.4953 34 1 7.1439 4.0256 1.9837 35 1 6.7640 -4.6407 -3.7777 36 1 6.7641 -3.6496 -5.2562 37 1 8.5133 -3.8962 -6.9178 38 1 10.2042 -5.3828 -7.9151 39 1 11.0469 -7.3161 -6.6443 40 1 10.2058 -7.7576 -4.3726 41 1 8.5224 -6.2653 -3.3714 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002201362.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:56 Heat of formation + Delta-G solvation = 112.084525 kcal Electronic energy + Delta-G solvation = -24953.334592 eV Core-core repulsion = 21279.535663 eV Total energy + Delta-G solvation = -3673.798929 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 360.077 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.47933 -39.00978 -37.28535 -36.07722 -33.15103 -33.05828 -31.64072 -31.18440 -30.35844 -27.46906 -27.15187 -25.03345 -23.83171 -22.86611 -22.27356 -21.75191 -20.03049 -18.57999 -17.60106 -17.17682 -16.72038 -16.48315 -15.99085 -15.57031 -15.44813 -15.11846 -14.78697 -14.69005 -14.17327 -13.96574 -13.72956 -13.52886 -13.29484 -13.04975 -12.87385 -12.73697 -12.55985 -12.47732 -12.24329 -11.86255 -11.73629 -11.45284 -11.32832 -11.22559 -11.00255 -10.94847 -10.88090 -10.70515 -10.31534 -10.17126 -9.85459 -9.54436 -9.20883 -8.98817 -8.96349 -8.73179 -8.06542 -7.26912 -6.34348 -4.45357 0.51161 1.12292 1.13836 1.26683 1.59984 1.79603 2.21058 2.74136 2.94083 2.99868 3.14965 3.22984 3.23334 3.37647 3.56826 4.19299 4.30559 4.33936 4.51848 4.72399 4.84762 4.95021 4.96881 5.06052 5.20285 5.25904 5.30229 5.34675 5.41116 5.53201 5.68267 5.70716 5.75699 5.94679 6.15522 6.21586 6.22341 6.27593 6.53912 6.68581 6.84357 7.28780 7.57600 7.61293 7.75094 7.77796 8.44203 8.61676 9.23934 10.71092 Molecular weight = 360.08amu Principal moments of inertia in cm(-1) A = 0.011188 B = 0.002375 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.127502 B =11787.742981 C =13268.201324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C 0.223 3.777 3 C -0.050 4.050 4 C 0.143 3.857 5 N -0.549 5.549 6 C 0.246 3.754 7 C -0.548 4.548 8 H 0.067 0.933 9 C 0.071 3.929 10 N -0.886 5.886 11 Si 0.897 3.103 12 H -0.276 1.276 13 H -0.284 1.284 14 H -0.271 1.271 15 C 0.337 3.663 16 N -0.389 5.389 17 N -0.260 5.260 18 C -0.027 4.027 19 S 0.002 5.998 20 C -0.066 4.066 21 C -0.076 4.076 22 C -0.100 4.100 23 C -0.121 4.121 24 C -0.116 4.116 25 C -0.121 4.121 26 C -0.099 4.099 27 S 0.110 5.890 28 H 0.127 0.873 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.039 0.961 33 H 0.052 0.948 34 H 0.268 0.732 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.324 -13.891 -12.341 19.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.131 5.131 2 C -0.095 4.095 3 C -0.091 4.091 4 C 0.016 3.984 5 N -0.265 5.265 6 C 0.127 3.873 7 C -0.586 4.586 8 H 0.085 0.915 9 C -0.134 4.134 10 N -0.523 5.523 11 Si 0.724 3.276 12 H -0.202 1.202 13 H -0.210 1.210 14 H -0.196 1.196 15 C -0.044 4.044 16 N -0.231 5.231 17 N -0.089 5.089 18 C -0.428 4.428 19 S 0.232 5.768 20 C -0.215 4.215 21 C -0.078 4.078 22 C -0.120 4.120 23 C -0.139 4.139 24 C -0.135 4.135 25 C -0.139 4.139 26 C -0.119 4.119 27 S 0.345 5.655 28 H 0.145 0.855 29 H 0.125 0.875 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.369 -13.524 -12.175 19.280 hybrid contribution -0.655 -0.279 1.088 1.300 sum 5.714 -13.804 -11.087 18.604 Atomic orbital electron populations 1.81162 1.13085 1.09534 1.09328 1.29179 0.95142 0.92556 0.92640 1.19902 0.80965 1.04592 1.03686 1.21246 0.79209 1.00905 0.97040 1.46869 1.04492 1.24023 1.51147 1.19745 0.91877 0.84152 0.91534 1.21428 1.38294 1.03968 0.94958 0.91477 1.24912 0.94773 0.94584 0.99095 1.69903 1.37166 1.08837 1.36434 0.86499 0.79098 0.78334 0.83674 1.20213 1.20981 1.19598 1.25960 0.92259 0.92512 0.93629 1.75164 1.22789 1.05094 1.20025 1.75241 0.97102 1.19965 1.16605 1.30136 1.00870 1.03892 1.07876 1.85648 1.03366 1.25434 1.62368 1.22496 0.99068 0.96979 1.02942 1.19256 0.98013 0.95745 0.94751 1.21118 0.96776 0.99387 0.94690 1.21151 0.97367 0.95256 1.00129 1.21218 0.99756 0.97597 0.94880 1.21158 0.97394 0.99652 0.95679 1.21130 0.96750 0.94248 0.99812 1.86121 1.04488 1.22537 1.52387 0.85484 0.87451 0.89842 0.89188 0.94305 0.93009 0.92182 0.87853 0.87896 0.85555 0.85807 0.86009 0.85794 0.85520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.74 18.54 42.15 0.78 -6.96 16 2 C 0.22 3.33 15.43 -20.76 -0.32 3.01 16 3 C -0.05 -0.70 6.03 -29.51 -0.18 -0.88 16 4 C 0.14 2.14 5.54 -4.04 -0.02 2.12 16 5 N -0.55 -9.84 2.57 -175.69 -0.45 -10.29 16 6 C 0.25 5.11 5.22 -5.19 -0.03 5.09 16 7 C -0.55 -12.53 8.92 -34.44 -0.31 -12.84 16 8 H 0.07 1.52 7.42 -52.49 -0.39 1.13 16 9 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -22.67 13.29 55.43 0.74 -21.93 16 11 Si 0.90 19.16 29.54 -169.99 -5.02 14.14 16 12 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 13 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 14 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 15 C 0.34 6.23 8.00 -87.40 -0.70 5.53 16 16 N -0.39 -7.31 11.37 30.85 0.35 -6.96 16 17 N -0.26 -4.66 11.62 31.11 0.36 -4.30 16 18 C -0.03 -0.44 7.82 51.84 0.41 -0.04 16 19 S 0.00 0.03 22.15 -107.50 -2.38 -2.35 16 20 C -0.07 -0.70 5.67 36.00 0.20 -0.50 16 21 C -0.08 -0.72 5.14 -104.62 -0.54 -1.26 16 22 C -0.10 -0.87 9.70 -39.58 -0.38 -1.25 16 23 C -0.12 -0.92 10.05 -39.59 -0.40 -1.32 16 24 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 25 C -0.12 -0.93 10.05 -39.59 -0.40 -1.33 16 26 C -0.10 -0.88 9.70 -39.58 -0.38 -1.26 16 27 S 0.11 1.96 22.01 -107.50 -2.37 -0.41 16 28 H 0.13 1.87 7.26 -51.93 -0.38 1.49 16 29 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.08 1.22 7.65 -51.93 -0.40 0.82 16 31 H 0.09 1.23 7.89 -51.93 -0.41 0.82 16 32 H 0.04 0.87 7.11 -51.93 -0.37 0.50 16 33 H 0.05 1.11 7.89 -51.93 -0.41 0.70 16 34 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 35 H 0.10 1.12 8.09 -51.92 -0.42 0.70 16 36 H 0.10 1.10 8.08 -51.92 -0.42 0.68 16 37 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 39 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 41 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 LS Contribution 393.29 15.07 5.93 5.93 Total: -1.00 -27.73 393.29 -10.47 -38.20 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -4.86 Total: -0.53 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -3.54 Total: -4.54 kcal Atomic # 7 Polarization: -52.22 SS G_CDS: 1.78 Total: -50.44 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.02 Total: 14.14 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -4.75 Total: -2.76 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -27.73 -10.47 -38.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002201362.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.284 kcal (2) G-P(sol) polarization free energy of solvation -27.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds