Wall clock time and date at job start Tue Mar 31 2020 06:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47021 * 123.83955 * 3 2 1 5 5 N 1.46496 * 109.47037 * 179.97438 * 4 3 2 6 6 C 1.46496 * 120.00148 * 270.00039 * 5 4 3 7 7 C 1.50704 * 109.47140 * 90.00437 * 6 5 4 8 8 H 1.07999 * 119.99784 * 359.97438 * 7 6 5 9 9 C 1.37868 * 120.00248 * 180.02562 * 7 6 5 10 10 N 1.31515 * 120.00088 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 120.00372 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47234 * 89.99426 * 11 9 7 13 13 H 1.48493 * 109.47269 * 209.99973 * 11 9 7 14 14 H 1.48504 * 109.46554 * 329.99692 * 11 9 7 15 15 C 1.38995 * 119.99609 * 90.00545 * 5 4 3 16 16 N 1.29574 * 125.40775 * 359.68965 * 15 5 4 17 17 N 1.37764 * 115.62816 * 179.79906 * 16 15 5 18 18 C 1.29649 * 115.60412 * 0.49905 * 17 16 15 19 19 S 1.76193 * 125.41298 * 179.71836 * 18 17 16 20 20 C 1.81397 * 103.00210 * 0.02643 * 19 18 17 21 21 C 1.50697 * 109.47441 * 179.97438 * 20 19 18 22 22 C 1.38237 * 120.00325 * 269.73132 * 21 20 19 23 23 C 1.38232 * 119.99659 * 179.76509 * 22 21 20 24 24 C 1.38233 * 120.00586 * 0.50796 * 23 22 21 25 25 C 1.38236 * 119.99533 * 359.74610 * 24 23 22 26 26 C 1.38230 * 120.00321 * 359.97438 * 25 24 23 27 27 S 1.76040 * 125.40168 * 179.97438 * 15 5 4 28 28 H 1.08996 * 109.47366 * 243.84392 * 3 2 1 29 29 H 1.09000 * 109.47090 * 3.84202 * 3 2 1 30 30 H 1.08996 * 109.47407 * 300.00412 * 4 3 2 31 31 H 1.09004 * 109.46733 * 59.99729 * 4 3 2 32 32 H 1.09000 * 109.47114 * 210.00248 * 6 5 4 33 33 H 1.08997 * 109.47404 * 330.00160 * 6 5 4 34 34 H 0.97005 * 120.00038 * 179.97438 * 10 9 7 35 35 H 1.08999 * 109.47743 * 300.00359 * 20 19 18 36 36 H 1.09006 * 109.46802 * 60.00002 * 20 19 18 37 37 H 1.08001 * 119.99599 * 359.97438 * 22 21 20 38 38 H 1.08003 * 119.99963 * 180.22866 * 23 22 21 39 39 H 1.07994 * 120.00520 * 179.72698 * 24 23 22 40 40 H 1.08006 * 119.99816 * 179.97438 * 25 24 23 41 41 H 1.08003 * 120.00305 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1176 0.8042 -1.1982 5 7 4.5826 0.8054 -1.1978 6 6 5.3141 1.8598 -0.4913 7 6 5.5654 1.4303 0.9312 8 1 5.2148 0.4683 1.2747 9 6 6.2418 2.2658 1.7943 10 7 6.6683 3.4376 1.3762 11 14 6.5527 1.7338 3.5578 12 1 7.8483 1.0122 3.6361 13 1 6.5989 2.9308 4.4352 14 1 5.4578 0.8350 4.0039 15 6 5.2784 -0.1940 -1.8680 16 7 4.7400 -1.1762 -2.5194 17 7 5.6222 -2.0519 -3.1134 18 6 6.8790 -1.7872 -2.9365 19 16 8.2214 -2.7352 -3.5718 20 6 7.3874 -4.0734 -4.4687 21 6 8.4182 -4.9862 -5.0812 22 6 8.8865 -4.7415 -6.3586 23 6 9.8356 -5.5761 -6.9185 24 6 10.3087 -6.6616 -6.2052 25 6 9.8365 -6.9093 -4.9298 26 6 8.8917 -6.0714 -4.3676 27 16 7.0311 -0.3300 -1.9604 28 1 2.9711 0.4538 0.9224 29 1 2.9718 -1.0245 -0.0689 30 1 2.7544 0.3510 -2.1205 31 1 2.7537 1.8294 -1.1293 32 1 6.2664 2.0384 -0.9905 33 1 4.7243 2.7764 -0.4953 34 1 7.1439 4.0256 1.9837 35 1 6.7640 -4.6407 -3.7777 36 1 6.7641 -3.6496 -5.2562 37 1 8.5133 -3.8962 -6.9178 38 1 10.2042 -5.3828 -7.9151 39 1 11.0469 -7.3161 -6.6443 40 1 10.2058 -7.7576 -4.3726 41 1 8.5224 -6.2653 -3.3714 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002201362.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:56 Heat of formation + Delta-G solvation = 101.177646 kcal Electronic energy + Delta-G solvation = -24953.807549 eV Core-core repulsion = 21279.535663 eV Total energy + Delta-G solvation = -3674.271887 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 360.077 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -40.39932 -40.09170 -38.64382 -37.42912 -34.83735 -33.83897 -32.93926 -31.83082 -31.77682 -28.99949 -28.00147 -26.37238 -25.37167 -23.78441 -23.46553 -22.43049 -21.34595 -19.95550 -19.03751 -18.25903 -18.05853 -17.64940 -17.19453 -16.53033 -16.36292 -16.15753 -16.08543 -15.99209 -15.37158 -15.27307 -14.90352 -14.35808 -14.30785 -14.14655 -14.00033 -13.92876 -13.82713 -13.58532 -13.39949 -13.37974 -13.22679 -12.82332 -12.64816 -12.25952 -12.23237 -12.14185 -11.97497 -11.88771 -11.75847 -11.56580 -11.50269 -10.94591 -10.58970 -10.38881 -9.81312 -9.63676 -9.37157 -8.58334 -8.14969 -6.32518 -0.58913 -0.10394 0.15485 0.27715 0.52194 0.62516 1.26811 1.34579 1.45605 1.50140 1.55978 1.65703 1.76541 1.95980 2.44004 2.94610 3.05773 3.14141 3.56710 3.72302 3.81486 4.04062 4.09020 4.17470 4.18428 4.25779 4.33019 4.49643 4.56644 4.66403 4.71362 4.74584 4.95004 5.02367 5.07383 5.14019 5.18087 5.57049 5.62984 5.64358 5.66017 5.89186 5.99708 6.10200 6.12474 6.52651 6.76922 7.07119 7.39303 8.86832 Molecular weight = 360.08amu Principal moments of inertia in cm(-1) A = 0.011188 B = 0.002375 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.127502 B =11787.742981 C =13268.201324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C 0.247 3.753 3 C -0.036 4.036 4 C 0.142 3.858 5 N -0.550 5.550 6 C 0.259 3.741 7 C -0.541 4.541 8 H 0.069 0.931 9 C 0.028 3.972 10 N -0.919 5.919 11 Si 0.947 3.053 12 H -0.279 1.279 13 H -0.287 1.287 14 H -0.264 1.264 15 C 0.330 3.670 16 N -0.398 5.398 17 N -0.278 5.278 18 C -0.015 4.015 19 S 0.018 5.982 20 C -0.056 4.056 21 C -0.092 4.092 22 C -0.110 4.110 23 C -0.126 4.126 24 C -0.115 4.115 25 C -0.127 4.127 26 C -0.111 4.111 27 S 0.086 5.914 28 H 0.126 0.874 29 H 0.111 0.889 30 H 0.089 0.911 31 H 0.103 0.897 32 H 0.022 0.978 33 H 0.046 0.954 34 H 0.267 0.733 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.133 0.867 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.147 -15.754 -12.975 21.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.164 5.164 2 C -0.070 4.070 3 C -0.077 4.077 4 C 0.015 3.985 5 N -0.267 5.267 6 C 0.139 3.861 7 C -0.580 4.580 8 H 0.087 0.913 9 C -0.173 4.173 10 N -0.558 5.558 11 Si 0.773 3.227 12 H -0.205 1.205 13 H -0.213 1.213 14 H -0.188 1.188 15 C -0.050 4.050 16 N -0.239 5.239 17 N -0.107 5.107 18 C -0.416 4.416 19 S 0.249 5.751 20 C -0.205 4.205 21 C -0.095 4.095 22 C -0.130 4.130 23 C -0.144 4.144 24 C -0.134 4.134 25 C -0.145 4.145 26 C -0.131 4.131 27 S 0.320 5.680 28 H 0.143 0.857 29 H 0.129 0.871 30 H 0.107 0.893 31 H 0.121 0.879 32 H 0.040 0.960 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.150 0.850 38 H 0.162 0.838 39 H 0.164 0.836 40 H 0.162 0.838 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 7.170 -15.408 -12.815 21.285 hybrid contribution -0.782 0.140 1.134 1.385 sum 6.387 -15.269 -11.681 20.258 Atomic orbital electron populations 1.81192 1.14029 1.10716 1.10460 1.29132 0.94905 0.91452 0.91554 1.19770 0.80202 1.04591 1.03159 1.21396 0.77520 1.01986 0.97572 1.46697 1.05341 1.23513 1.51138 1.19379 0.91346 0.84632 0.90729 1.21673 1.37016 1.03579 0.95753 0.91318 1.25537 0.95032 0.94705 1.02058 1.69992 1.38509 1.09863 1.37405 0.85710 0.78880 0.77813 0.80300 1.20471 1.21295 1.18778 1.26004 0.92376 0.92693 0.93974 1.75093 1.23560 1.05200 1.20070 1.75210 0.97527 1.20237 1.17746 1.30578 1.01321 1.03219 1.06436 1.85678 1.02157 1.25478 1.61826 1.22528 0.99304 0.96154 1.02539 1.19233 0.98674 0.96131 0.95416 1.21311 0.97168 1.00003 0.94541 1.21460 0.96833 0.95012 1.01112 1.21587 0.99645 0.97550 0.94630 1.21456 0.96904 0.99969 0.96142 1.21312 0.97216 0.94403 1.00190 1.86157 1.04759 1.23826 1.53247 0.85663 0.87134 0.89307 0.87856 0.96038 0.93573 0.92378 0.88012 0.87894 0.84957 0.83750 0.83601 0.83843 0.85099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -16.15 18.54 20.01 0.37 -15.78 16 2 C 0.25 7.10 15.43 89.44 1.38 8.48 16 3 C -0.04 -0.96 6.03 28.79 0.17 -0.78 16 4 C 0.14 4.08 5.54 86.38 0.48 4.56 16 5 N -0.55 -19.52 2.57 -709.77 -1.82 -21.35 16 6 C 0.26 10.81 5.22 85.64 0.45 11.26 16 7 C -0.54 -24.55 8.92 25.60 0.23 -24.32 16 8 H 0.07 3.05 7.42 -2.91 -0.02 3.03 16 9 C 0.03 1.33 5.46 84.65 0.46 1.80 16 10 N -0.92 -47.31 13.29 21.44 0.28 -47.03 16 11 Si 0.95 38.91 29.54 68.60 2.03 40.94 16 12 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 13 H -0.29 -11.86 7.11 99.48 0.71 -11.16 16 14 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 15 C 0.33 12.16 8.00 179.22 1.43 13.59 16 16 N -0.40 -14.79 11.37 -56.30 -0.64 -15.43 16 17 N -0.28 -9.84 11.62 -55.47 -0.64 -10.48 16 18 C -0.02 -0.49 7.82 130.56 1.02 0.53 16 19 S 0.02 0.46 22.15 -56.49 -1.25 -0.80 16 20 C -0.06 -1.15 5.67 71.23 0.40 -0.75 16 21 C -0.09 -1.65 5.14 -19.86 -0.10 -1.75 16 22 C -0.11 -1.75 9.70 22.27 0.22 -1.53 16 23 C -0.13 -1.62 10.05 22.27 0.22 -1.40 16 24 C -0.12 -1.36 10.05 22.27 0.22 -1.13 16 25 C -0.13 -1.66 10.05 22.27 0.22 -1.44 16 26 C -0.11 -1.80 9.70 22.27 0.22 -1.58 16 27 S 0.09 3.05 22.01 -56.49 -1.24 1.81 16 28 H 0.13 3.52 7.26 -2.39 -0.02 3.50 16 29 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 30 H 0.09 2.50 7.65 -2.39 -0.02 2.48 16 31 H 0.10 2.70 7.89 -2.39 -0.02 2.68 16 32 H 0.02 0.99 7.11 -2.39 -0.02 0.97 16 33 H 0.05 1.99 7.89 -2.39 -0.02 1.97 16 34 H 0.27 13.24 8.31 -92.70 -0.77 12.47 16 35 H 0.10 2.13 8.09 -2.39 -0.02 2.11 16 36 H 0.10 2.12 8.08 -2.39 -0.02 2.10 16 37 H 0.13 1.84 8.06 -2.91 -0.02 1.81 16 38 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 39 H 0.15 0.97 8.06 -2.91 -0.02 0.95 16 40 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 41 H 0.13 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -58.06 393.29 5.17 -52.89 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 1.06 Total: 9.68 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: 7.03 Total: 5.53 kcal Atomic # 7 Polarization: -107.61 SS G_CDS: -2.45 Total: -110.06 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 2.03 Total: 40.94 kcal Atomic # 16 Polarization: 3.51 SS G_CDS: -2.49 Total: 1.02 kcal Total: -58.06 5.17 -52.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002201362.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.072 kcal (2) G-P(sol) polarization free energy of solvation -58.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds