Wall clock time and date at job start Tue Mar 31 2020 05:55:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86802 * 119.99770 * 2 1 4 4 H 1.48501 * 109.47409 * 274.98514 * 3 2 1 5 5 H 1.48502 * 109.47132 * 34.98396 * 3 2 1 6 6 H 1.48496 * 109.46896 * 154.98196 * 3 2 1 7 7 C 1.40045 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99962 * 173.82038 * 7 2 1 9 9 C 1.46380 * 119.99982 * 353.82541 * 7 2 1 10 10 O 1.21690 * 119.99842 * 6.06842 * 9 7 2 11 11 N 1.34769 * 120.00051 * 186.07049 * 9 7 2 12 12 C 1.46504 * 120.00232 * 179.97438 * 11 9 7 13 13 C 1.52994 * 109.47096 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.46933 * 180.02562 * 13 12 11 15 15 O 1.45204 * 109.47191 * 180.02562 * 14 13 12 16 16 C 1.34651 * 116.99663 * 179.97438 * 15 14 13 17 17 O 1.21506 * 120.00300 * 0.02562 * 16 15 14 18 18 N 1.34780 * 119.99500 * 180.02562 * 16 15 14 19 19 C 1.40002 * 119.99496 * 185.19098 * 18 16 15 20 20 C 1.38890 * 120.04590 * 213.06706 * 19 18 16 21 21 C 1.38095 * 119.96631 * 180.02562 * 20 19 18 22 22 C 1.38377 * 120.07352 * 359.97438 * 21 20 19 23 23 Cl 1.73599 * 119.95363 * 180.27982 * 22 21 20 24 24 C 1.38481 * 120.09817 * 0.02562 * 22 21 20 25 25 Cl 1.73596 * 119.98251 * 180.02562 * 24 22 21 26 26 C 1.38244 * 120.03277 * 359.97438 * 24 22 21 27 27 H 0.97003 * 120.00346 * 0.02562 * 1 2 3 28 28 H 0.97000 * 120.00366 * 0.02562 * 11 9 7 29 29 H 1.08997 * 109.46817 * 60.00276 * 12 11 9 30 30 H 1.09003 * 109.46961 * 300.00749 * 12 11 9 31 31 H 1.09005 * 109.46922 * 60.00762 * 13 12 11 32 32 H 1.08997 * 109.47664 * 299.99840 * 13 12 11 33 33 H 1.08997 * 109.46950 * 60.00344 * 14 13 12 34 34 H 1.09002 * 109.47455 * 300.00463 * 14 13 12 35 35 H 0.96998 * 120.00233 * 5.19228 * 18 16 15 36 36 H 1.07996 * 120.01369 * 0.02562 * 20 19 18 37 37 H 1.08003 * 119.96643 * 180.02562 * 21 20 19 38 38 H 1.08002 * 120.03573 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.3828 2.1074 -1.3948 5 1 1.4947 2.6200 0.8027 6 1 3.5868 1.4121 0.5921 7 6 2.0070 -1.2128 -0.0005 8 1 3.0822 -1.2154 -0.1012 9 6 1.2815 -2.4769 0.1352 10 8 0.0646 -2.4828 0.1375 11 7 1.9612 -3.6341 0.2578 12 6 1.2352 -4.8993 0.3943 13 6 2.2353 -6.0508 0.5150 14 6 1.4770 -7.3721 0.6569 15 8 2.4261 -8.4649 0.7721 16 6 1.9176 -9.7046 0.9055 17 8 0.7139 -9.8688 0.9246 18 7 2.7441 -10.7633 1.0177 19 6 2.2192 -12.0609 1.0470 20 6 2.8438 -13.0469 1.7998 21 6 2.3250 -14.3264 1.8271 22 6 1.1832 -14.6272 1.1056 23 17 0.5295 -16.2348 1.1479 24 6 0.5581 -13.6463 0.3541 25 17 -0.8746 -14.0267 -0.5494 26 6 1.0738 -12.3640 0.3237 27 1 -0.4851 0.8400 -0.0004 28 1 2.9312 -3.6294 0.2564 29 1 0.6074 -5.0543 -0.4832 30 1 0.6102 -4.8651 1.2867 31 1 2.8634 -5.8959 1.3923 32 1 2.8598 -6.0848 -0.3777 33 1 0.8491 -7.5267 -0.2206 34 1 0.8521 -7.3384 1.5493 35 1 3.7024 -10.6263 1.0783 36 1 3.7348 -12.8130 2.3636 37 1 2.8105 -15.0930 2.4128 38 1 0.5866 -11.5991 -0.2627 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002494588.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:13 Heat of formation + Delta-G solvation = -109.631059 kcal Electronic energy + Delta-G solvation = -25092.403721 eV Core-core repulsion = 20793.635210 eV Total energy + Delta-G solvation = -4298.768511 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 360.048 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.38863 -39.81355 -37.75269 -37.32955 -36.95739 -36.68640 -35.21914 -34.37640 -32.48121 -31.52703 -31.16147 -29.93556 -26.85920 -25.14625 -23.94687 -23.35445 -21.63003 -21.51372 -19.77574 -19.37814 -18.39633 -17.43120 -17.14672 -17.08082 -16.59228 -16.07121 -15.33788 -15.26924 -15.15564 -14.63714 -14.49186 -14.38733 -14.07237 -13.56059 -13.49263 -13.17148 -12.71323 -12.38947 -12.31949 -12.27409 -12.04908 -11.98984 -11.56436 -11.32156 -11.25932 -11.22317 -11.15064 -10.96079 -10.89623 -10.69852 -10.52278 -10.46328 -10.24978 -9.46614 -8.87177 -8.74988 -7.66419 -7.57985 -6.22375 -4.66803 0.30268 0.52482 1.38187 1.49280 1.81188 2.26414 2.93172 3.12115 3.19485 3.23280 3.56490 4.06963 4.09249 4.34649 4.50719 4.55703 4.57529 4.68758 4.87652 4.96436 5.10689 5.19580 5.22689 5.38855 5.46038 5.53874 5.57465 5.58354 5.77632 5.79804 6.06282 6.13514 6.43205 6.45841 6.70378 7.41071 7.77015 7.88005 8.02953 8.29174 8.99743 9.47997 10.56415 10.74457 Molecular weight = 360.05amu Principal moments of inertia in cm(-1) A = 0.032034 B = 0.001326 C = 0.001283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.869481 B =21109.751659 C =21823.402642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.068 0.932 9 C 0.554 3.446 10 O -0.580 6.580 11 N -0.767 5.767 12 C 0.137 3.863 13 C -0.128 4.128 14 C 0.090 3.910 15 O -0.362 6.362 16 C 0.650 3.350 17 O -0.546 6.546 18 N -0.652 5.652 19 C 0.185 3.815 20 C -0.128 4.128 21 C -0.076 4.076 22 C -0.049 4.049 23 Cl -0.049 7.049 24 C -0.008 4.008 25 Cl -0.040 7.040 26 C -0.104 4.104 27 H 0.269 0.731 28 H 0.381 0.619 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.423 0.577 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.898 -31.830 3.053 33.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.087 0.913 9 C 0.358 3.642 10 O -0.463 6.463 11 N -0.424 5.424 12 C 0.011 3.989 13 C -0.166 4.166 14 C 0.016 3.984 15 O -0.275 6.275 16 C 0.404 3.596 17 O -0.433 6.433 18 N -0.304 5.304 19 C 0.090 3.910 20 C -0.149 4.149 21 C -0.095 4.095 22 C -0.078 4.078 23 Cl -0.020 7.020 24 C -0.037 4.037 25 Cl -0.011 7.011 26 C -0.126 4.126 27 H 0.079 0.921 28 H 0.213 0.787 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.260 0.740 36 H 0.164 0.836 37 H 0.167 0.833 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 6.995 -31.788 2.952 32.682 hybrid contribution 1.110 0.728 -0.013 1.327 sum 8.105 -31.060 2.939 32.234 Atomic orbital electron populations 1.70024 1.07109 1.27334 1.35121 1.25709 0.94600 1.00332 0.92593 0.86358 0.80258 0.81459 0.78678 1.19820 1.20384 1.18848 1.20872 0.94116 0.89526 1.53843 0.91339 1.18248 0.87169 0.82342 0.76471 1.90606 1.14093 1.86376 1.55253 1.46108 1.08634 1.05486 1.82123 1.20666 0.93551 0.83582 1.01082 1.21804 0.99573 0.91397 1.03868 1.23132 0.89981 0.81836 1.03453 1.86231 1.41876 1.14290 1.85115 1.18065 0.84164 0.81369 0.76032 1.91066 1.13259 1.85383 1.53622 1.41950 1.10854 1.01944 1.75672 1.17315 0.94909 0.83003 0.95805 1.20921 1.02440 0.92114 0.99402 1.20808 0.93764 0.96849 0.98089 1.20769 0.97464 0.87214 1.02320 1.98396 1.85516 1.20586 1.97507 1.20542 0.91785 0.93476 0.97872 1.98412 1.35838 1.94253 1.72601 1.21079 0.96682 0.95060 0.99735 0.92062 0.78726 0.92943 0.92935 0.90376 0.90380 0.90336 0.90342 0.73970 0.83633 0.83282 0.82441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.93 11.85 55.55 0.66 -22.28 16 2 C 0.09 2.43 5.49 -17.37 -0.10 2.33 16 3 Si 0.91 19.89 29.56 -169.99 -5.03 14.86 16 4 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.55 -15.28 9.54 -35.63 -0.34 -15.62 16 8 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 9 C 0.55 15.61 7.74 -12.99 -0.10 15.51 16 10 O -0.58 -18.76 15.05 5.20 0.08 -18.68 16 11 N -0.77 -16.55 5.55 -61.72 -0.34 -16.89 16 12 C 0.14 2.45 5.67 -4.04 -0.02 2.43 16 13 C -0.13 -1.62 5.71 -26.73 -0.15 -1.77 16 14 C 0.09 1.07 5.47 37.16 0.20 1.27 16 15 O -0.36 -3.94 10.27 -40.36 -0.41 -4.36 16 16 C 0.65 7.09 8.49 54.06 0.46 7.55 16 17 O -0.55 -7.61 13.80 -19.28 -0.27 -7.88 16 18 N -0.65 -4.79 5.35 -14.26 -0.08 -4.87 16 19 C 0.18 1.41 6.29 -83.67 -0.53 0.89 16 20 C -0.13 -0.66 9.96 -39.39 -0.39 -1.05 16 21 C -0.08 -0.42 9.82 -39.58 -0.39 -0.80 16 22 C -0.05 -0.38 6.32 -39.44 -0.25 -0.63 16 23 Cl -0.05 -0.37 27.95 -51.86 -1.45 -1.82 16 24 C -0.01 -0.08 6.32 -39.49 -0.25 -0.33 16 25 Cl -0.04 -0.38 27.95 -51.86 -1.45 -1.83 16 26 C -0.10 -0.99 8.44 -39.37 -0.33 -1.32 16 27 H 0.27 7.26 8.29 -40.82 -0.34 6.92 16 28 H 0.38 7.06 8.45 -40.82 -0.35 6.72 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.42 1.73 8.92 -40.82 -0.36 1.37 16 36 H 0.15 0.33 8.06 -52.49 -0.42 -0.10 16 37 H 0.15 0.45 8.06 -52.48 -0.42 0.03 16 38 H 0.16 1.73 6.39 -52.49 -0.34 1.39 16 LS Contribution 368.79 15.07 5.56 5.56 Total: -1.00 -36.19 368.79 -8.89 -45.08 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: -3.97 Total: 4.65 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: -2.19 Total: 8.46 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.24 Total: -44.03 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.60 Total: -30.92 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.03 Total: 14.86 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -2.90 Total: -3.65 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.19 -8.89 -45.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002494588.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.553 kcal (2) G-P(sol) polarization free energy of solvation -36.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds