Wall clock time and date at job start Tue Mar 31 2020 06:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30888 * 1 3 3 Si 1.86803 * 119.99961 * 2 1 4 4 H 1.48503 * 109.46736 * 269.99124 * 3 2 1 5 5 H 1.48497 * 109.47245 * 29.99423 * 3 2 1 6 6 H 1.48500 * 109.47129 * 149.99542 * 3 2 1 7 7 C 1.39875 * 119.99958 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99686 * 163.10204 * 7 2 1 9 9 C 1.41196 * 120.00013 * 343.11127 * 7 2 1 10 10 C 1.40852 * 120.15637 * 334.48526 * 9 7 2 11 11 C 1.36457 * 120.02771 * 180.29748 * 10 9 7 12 12 C 1.39163 * 120.36018 * 359.45310 * 11 10 9 13 13 O 1.35736 * 119.84175 * 180.25545 * 12 11 10 14 14 C 1.42904 * 116.99983 * 0.29553 * 13 12 11 15 15 C 1.50699 * 109.47435 * 180.02562 * 14 13 12 16 16 C 1.38235 * 120.00089 * 269.72623 * 15 14 13 17 17 C 1.38230 * 120.00257 * 179.76485 * 16 15 14 18 18 C 1.38234 * 119.99712 * 0.50355 * 17 16 15 19 19 C 1.38236 * 120.00346 * 359.74938 * 18 17 16 20 20 C 1.38234 * 120.00018 * 89.99465 * 15 14 13 21 21 C 1.39814 * 120.31635 * 0.55376 * 12 11 10 22 22 O 1.35974 * 120.01794 * 179.74993 * 21 12 11 23 23 C 1.42898 * 116.99866 * 179.97438 * 22 21 12 24 24 C 1.50698 * 109.46892 * 179.97438 * 23 22 21 25 25 C 1.38243 * 120.00115 * 269.73012 * 24 23 22 26 26 C 1.38231 * 119.99757 * 179.76523 * 25 24 23 27 27 C 1.38234 * 120.00249 * 0.51058 * 26 25 24 28 28 C 1.38235 * 120.00086 * 359.74029 * 27 26 25 29 29 C 1.38236 * 119.99860 * 0.02562 * 28 27 26 30 30 C 1.37819 * 119.96435 * 359.72077 * 21 12 11 31 31 H 0.97008 * 119.99961 * 0.02562 * 1 2 3 32 32 H 1.07996 * 119.98714 * 0.03175 * 10 9 7 33 33 H 1.08004 * 119.82048 * 179.73148 * 11 10 9 34 34 H 1.09006 * 109.47222 * 299.99635 * 14 13 12 35 35 H 1.08995 * 109.47288 * 59.99661 * 14 13 12 36 36 H 1.08000 * 119.99546 * 359.97438 * 16 15 14 37 37 H 1.08000 * 120.00126 * 180.23409 * 17 16 15 38 38 H 1.08002 * 119.99874 * 179.72281 * 18 17 16 39 39 H 1.07999 * 120.00340 * 179.97438 * 19 18 17 40 40 H 1.07998 * 120.00020 * 0.02562 * 20 15 14 41 41 H 1.09001 * 109.47544 * 300.00066 * 23 22 21 42 42 H 1.09000 * 109.46892 * 60.00461 * 23 22 21 43 43 H 1.08002 * 119.99808 * 359.97438 * 25 24 23 44 44 H 1.08007 * 119.99633 * 180.22881 * 26 25 24 45 45 H 1.08007 * 119.99844 * 179.72393 * 27 26 25 46 46 H 1.08003 * 120.00151 * 179.97438 * 28 27 26 47 47 H 1.07999 * 119.99778 * 179.97438 * 29 28 27 48 48 H 1.08004 * 120.17571 * 180.02562 * 30 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4905 2.0463 -1.4001 5 1 1.4403 2.6527 0.6999 6 1 3.5404 1.4402 0.7001 7 6 2.0082 -1.2114 0.0005 8 1 3.0533 -1.2316 -0.2713 9 6 1.3479 -2.4076 0.3563 10 6 0.2177 -2.3692 1.1959 11 6 -0.4148 -3.5274 1.5430 12 6 0.0436 -4.7504 1.0625 13 8 -0.5967 -5.8956 1.4103 14 6 -1.7348 -5.7686 2.2653 15 6 -2.3102 -7.1337 2.5419 16 6 -3.2870 -7.6530 1.7129 17 6 -3.8114 -8.9071 1.9638 18 6 -3.3663 -9.6377 3.0496 19 6 -2.3933 -9.1164 3.8816 20 6 -1.8652 -7.8644 3.6277 21 6 1.1642 -4.8057 0.2283 22 8 1.6099 -6.0044 -0.2336 23 6 2.7596 -5.9859 -1.0819 24 6 3.1044 -7.3946 -1.4915 25 6 3.9760 -8.1441 -0.7236 26 6 4.2884 -9.4379 -1.0967 27 6 3.7375 -9.9787 -2.2434 28 6 2.8699 -9.2275 -3.0141 29 6 2.5537 -7.9353 -2.6384 30 6 1.8165 -3.6445 -0.1261 31 1 -0.4850 0.8401 -0.0004 32 1 -0.1459 -1.4231 1.5687 33 1 -1.2786 -3.4945 2.1906 34 1 -1.4336 -5.3047 3.2046 35 1 -2.4874 -5.1485 1.7787 36 1 -3.6380 -7.0801 0.8674 37 1 -4.5718 -9.3143 1.3139 38 1 -3.7792 -10.6158 3.2481 39 1 -2.0459 -9.6871 4.7301 40 1 -1.1054 -7.4567 4.2780 41 1 2.5465 -5.3908 -1.9699 42 1 3.6008 -5.5481 -0.5443 43 1 4.4102 -7.7198 0.1697 44 1 4.9664 -10.0247 -0.4947 45 1 3.9851 -10.9881 -2.5373 46 1 2.4398 -9.6499 -3.9102 47 1 1.8763 -7.3483 -3.2408 48 1 2.6822 -3.6833 -0.7707 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002528061.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:35 Heat of formation + Delta-G solvation = -5.095534 kcal Electronic energy + Delta-G solvation = -30232.317472 eV Core-core repulsion = 26182.321099 eV Total energy + Delta-G solvation = -4049.996373 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 360.151 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -39.60337 -39.27823 -38.68128 -37.29234 -35.98979 -33.30800 -31.95890 -31.78846 -30.85096 -30.84820 -29.42631 -28.46217 -26.39999 -25.97255 -24.55651 -22.51867 -22.51634 -21.94488 -21.20576 -20.90921 -20.04639 -18.00022 -17.04307 -16.79409 -16.69648 -15.75804 -15.61421 -15.55652 -15.39735 -15.14466 -15.06032 -14.42486 -14.26677 -13.78716 -13.59361 -13.40640 -13.34817 -13.30936 -13.27519 -12.70851 -12.68532 -12.60572 -12.02078 -11.88422 -11.66542 -11.54094 -11.20096 -11.07506 -11.03570 -10.93885 -10.88282 -10.64251 -10.59237 -10.23008 -9.97630 -9.74291 -9.67022 -9.01439 -8.86721 -8.86381 -8.78261 -8.69748 -7.46871 -6.80583 -6.69381 -4.34187 1.32727 1.33644 1.45636 1.46036 2.70382 2.91045 3.04523 3.08239 3.18119 3.67855 3.71031 3.89755 4.34666 4.44353 4.55055 4.90355 4.90900 4.95665 4.97275 5.06126 5.08088 5.18940 5.21221 5.43855 5.44305 5.54145 5.54944 5.58714 5.74384 5.75652 5.76156 5.77283 6.01212 6.03643 6.10669 6.10995 6.13221 6.47883 6.48351 6.51985 6.52322 6.57137 6.71926 6.72175 6.72563 6.77239 6.98723 7.03379 7.03582 7.18236 7.30814 7.82492 7.85430 8.05681 8.19216 8.42298 8.65568 8.83378 8.98589 10.14731 Molecular weight = 360.15amu Principal moments of inertia in cm(-1) A = 0.005678 B = 0.003415 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4929.802621 B = 8197.505842 C =12455.412049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.076 3.924 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.460 4.460 8 H 0.077 0.923 9 C 0.118 3.882 10 C -0.155 4.155 11 C -0.146 4.146 12 C -0.030 4.030 13 O -0.310 6.310 14 C 0.105 3.895 15 C -0.079 4.079 16 C -0.098 4.098 17 C -0.126 4.126 18 C -0.121 4.121 19 C -0.126 4.126 20 C -0.098 4.098 21 C 0.126 3.874 22 O -0.311 6.311 23 C 0.103 3.897 24 C -0.080 4.080 25 C -0.097 4.097 26 C -0.126 4.126 27 C -0.120 4.120 28 C -0.126 4.126 29 C -0.097 4.097 30 C -0.281 4.281 31 H 0.281 0.719 32 H 0.123 0.877 33 H 0.102 0.898 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.123 0.877 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.121 0.879 47 H 0.124 0.876 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.733 -14.770 1.220 14.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.490 4.490 8 H 0.095 0.905 9 C 0.115 3.885 10 C -0.175 4.175 11 C -0.165 4.165 12 C -0.073 4.073 13 O -0.226 6.226 14 C 0.029 3.971 15 C -0.079 4.079 16 C -0.116 4.116 17 C -0.144 4.144 18 C -0.139 4.139 19 C -0.144 4.144 20 C -0.116 4.116 21 C 0.082 3.918 22 O -0.226 6.226 23 C 0.027 3.973 24 C -0.080 4.080 25 C -0.116 4.116 26 C -0.144 4.144 27 C -0.138 4.138 28 C -0.144 4.144 29 C -0.115 4.115 30 C -0.302 4.302 31 H 0.091 0.909 32 H 0.140 0.860 33 H 0.120 0.880 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.141 0.859 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.139 0.861 47 H 0.142 0.858 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.963 -14.968 1.186 15.045 hybrid contribution 0.295 1.192 -0.068 1.229 sum -0.668 -13.776 1.118 13.837 Atomic orbital electron populations 1.69846 1.07525 1.29226 1.35388 1.25887 0.94736 1.01274 0.92240 0.86326 0.80647 0.80623 0.79233 1.19506 1.20083 1.18460 1.19449 0.97738 0.91013 1.40805 0.90455 1.17341 0.91048 0.91484 0.88581 1.20893 0.99114 0.96535 1.00914 1.20422 1.01011 0.91991 1.03031 1.17727 0.97450 0.84868 1.07280 1.85991 1.41504 1.29933 1.65209 1.21275 0.88487 0.92869 0.94434 1.19719 0.96536 0.96118 0.95531 1.21122 0.96365 0.95664 0.98433 1.21114 1.00511 0.94835 0.97914 1.21134 0.97654 0.99660 0.95444 1.21112 0.97560 0.95839 0.99897 1.21110 0.98769 0.94412 0.97319 1.17925 0.93517 0.83874 0.96497 1.86094 1.44196 1.28915 1.63374 1.21369 0.88803 0.92696 0.94392 1.19706 0.97340 0.95634 0.95331 1.21119 0.97471 0.94140 0.98820 1.21111 1.00597 0.95463 0.97237 1.21140 0.97647 0.99634 0.95396 1.21118 0.98725 0.94477 1.00064 1.21131 0.98399 0.95453 0.96526 1.20874 1.06228 0.91866 1.11216 0.90854 0.85951 0.87972 0.92377 0.92299 0.85862 0.86110 0.86304 0.86125 0.85897 0.91692 0.91795 0.85854 0.86100 0.86282 0.86085 0.85815 0.87484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.05 10.96 55.54 0.61 -19.44 16 2 C 0.08 1.87 5.15 -17.34 -0.09 1.78 16 3 Si 0.91 18.25 29.59 -169.99 -5.03 13.22 16 4 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 7 C -0.46 -11.92 9.04 -37.85 -0.34 -12.26 16 8 H 0.08 1.92 7.90 -52.48 -0.41 1.50 16 9 C 0.12 3.09 5.57 -106.82 -0.59 2.49 16 10 C -0.16 -3.95 8.63 -39.24 -0.34 -4.29 16 11 C -0.15 -3.39 8.96 -39.88 -0.36 -3.75 16 12 C -0.03 -0.70 6.73 -38.65 -0.26 -0.96 16 13 O -0.31 -6.80 9.89 -33.46 -0.33 -7.13 16 14 C 0.11 1.83 4.86 36.01 0.17 2.01 16 15 C -0.08 -1.22 5.51 -104.62 -0.58 -1.80 16 16 C -0.10 -1.37 9.70 -39.59 -0.38 -1.76 16 17 C -0.13 -1.50 10.05 -39.59 -0.40 -1.90 16 18 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 19 C -0.13 -1.50 10.05 -39.58 -0.40 -1.89 16 20 C -0.10 -1.36 9.70 -39.58 -0.38 -1.75 16 21 C 0.13 3.01 6.70 -39.15 -0.26 2.74 16 22 O -0.31 -6.83 9.90 -34.20 -0.34 -7.17 16 23 C 0.10 1.82 4.87 36.00 0.18 2.00 16 24 C -0.08 -1.25 5.51 -104.62 -0.58 -1.82 16 25 C -0.10 -1.36 9.70 -39.58 -0.38 -1.75 16 26 C -0.13 -1.50 10.05 -39.59 -0.40 -1.90 16 27 C -0.12 -1.36 10.05 -39.58 -0.40 -1.75 16 28 C -0.13 -1.51 10.05 -39.58 -0.40 -1.91 16 29 C -0.10 -1.37 9.70 -39.58 -0.38 -1.76 16 30 C -0.28 -6.85 8.78 -38.77 -0.34 -7.19 16 31 H 0.28 6.44 8.30 -40.82 -0.34 6.11 16 32 H 0.12 3.18 6.18 -52.49 -0.32 2.86 16 33 H 0.10 2.09 6.26 -52.48 -0.33 1.77 16 34 H 0.06 0.95 7.58 -51.93 -0.39 0.56 16 35 H 0.06 0.99 7.60 -51.93 -0.39 0.59 16 36 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 37 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 40 H 0.12 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.06 1.12 7.60 -51.93 -0.39 0.73 16 42 H 0.06 1.08 7.60 -51.93 -0.39 0.69 16 43 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 44 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 45 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 46 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 47 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 48 H 0.11 2.41 6.29 -52.48 -0.33 2.08 16 LS Contribution 406.91 15.07 6.13 6.13 Total: -1.00 -30.06 406.91 -12.61 -42.67 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -6.34 Total: 10.89 kcal Atomic # 6 Polarization: -31.86 SS G_CDS: -7.31 Total: -39.16 kcal Atomic # 7 Polarization: -20.05 SS G_CDS: 0.61 Total: -19.44 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.67 Total: -14.30 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -30.06 -12.61 -42.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002528061.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.570 kcal (2) G-P(sol) polarization free energy of solvation -30.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds