Wall clock time and date at job start Tue Mar 31 2020 05:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38279 * 119.93129 * 2 1 4 4 C 1.38112 * 120.07227 * 180.27773 * 3 2 1 5 5 C 1.38880 * 119.92591 * 359.46855 * 4 3 2 6 6 N 1.39921 * 120.06637 * 180.29734 * 5 4 3 7 7 C 1.46504 * 119.99709 * 247.88943 * 6 5 4 8 8 C 1.50697 * 109.46906 * 90.00866 * 7 6 5 9 9 H 1.08004 * 120.00315 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00353 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00391 * 179.97438 * 10 8 7 12 12 Si 1.86799 * 119.99694 * 0.02562 * 10 8 7 13 13 H 1.48507 * 109.47341 * 89.99663 * 12 10 8 14 14 H 1.48500 * 109.47361 * 209.99962 * 12 10 8 15 15 H 1.48503 * 109.47252 * 329.99932 * 12 10 8 16 16 C 1.34777 * 120.00051 * 67.90141 * 6 5 4 17 17 O 1.21286 * 120.00048 * 4.72389 * 16 6 5 18 18 C 1.50700 * 119.99602 * 184.73635 * 16 6 5 19 19 O 1.45209 * 109.46796 * 179.97438 * 18 16 6 20 20 C 1.34229 * 116.99872 * 179.97438 * 19 18 16 21 21 O 1.20829 * 120.00234 * 359.97438 * 20 19 18 22 22 C 1.50697 * 119.99833 * 179.97438 * 20 19 18 23 23 N 1.46499 * 109.47114 * 179.97438 * 22 20 19 24 24 C 1.34598 * 126.44239 * 125.00221 * 23 22 20 25 25 N 1.31069 * 106.68226 * 180.02562 * 24 23 22 26 26 N 1.28841 * 107.99176 * 359.97438 * 25 24 23 27 27 N 1.28738 * 109.39540 * 359.74294 * 26 25 24 28 28 C 1.38874 * 119.85729 * 0.27850 * 5 4 3 29 29 C 1.38114 * 119.93006 * 359.97438 * 28 5 4 30 30 H 1.08997 * 109.47146 * 270.23432 * 1 2 3 31 31 H 1.09000 * 109.47057 * 30.22851 * 1 2 3 32 32 H 1.08997 * 109.47241 * 150.23012 * 1 2 3 33 33 H 1.08000 * 119.96745 * 0.04534 * 3 2 1 34 34 H 1.07999 * 120.04037 * 179.73762 * 4 3 2 35 35 H 1.08998 * 109.47136 * 210.00180 * 7 6 5 36 36 H 1.08997 * 109.47384 * 330.00615 * 7 6 5 37 37 H 0.96997 * 119.99949 * 179.97438 * 11 10 8 38 38 H 1.09006 * 109.46923 * 299.99072 * 18 16 6 39 39 H 1.08999 * 109.47466 * 59.99499 * 18 16 6 40 40 H 1.09001 * 109.47229 * 299.99676 * 22 20 19 41 41 H 1.08994 * 109.47297 * 59.99934 * 22 20 19 42 42 H 1.07997 * 126.65574 * 359.95973 * 24 23 22 43 43 H 1.08001 * 120.03091 * 180.02562 * 28 5 4 44 44 H 1.08000 * 119.96158 * 180.02562 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 -0.0058 5 6 4.2739 -0.0001 -0.0005 6 7 5.6731 -0.0001 0.0000 7 6 6.4059 -0.4826 -1.1732 8 6 6.6575 0.6660 -2.1157 9 1 6.3062 1.6564 -1.8661 10 6 7.3361 0.4528 -3.2969 11 7 7.5552 1.4551 -4.1196 12 14 7.9430 -1.2602 -3.7291 13 1 6.8917 -1.9800 -4.4920 14 1 9.1715 -1.1559 -4.5569 15 1 8.2483 -2.0065 -2.4821 16 6 6.3466 0.4437 1.0798 17 8 5.7430 0.7622 2.0823 18 6 7.8498 0.5442 1.0412 19 8 8.3342 1.0448 2.3153 20 6 9.6617 1.1932 2.4468 21 8 10.3949 0.9137 1.5279 22 6 10.2378 1.7085 3.7405 23 7 11.6971 1.7786 3.6315 24 6 12.4640 2.8628 3.8508 25 7 13.7047 2.4940 3.6445 26 7 13.7002 1.2481 3.3162 27 7 12.4892 0.8112 3.3130 28 6 3.5780 -1.2019 0.0048 29 6 2.1968 -1.1984 0.0053 30 1 -0.3633 0.0042 1.0276 31 1 -0.3633 0.8879 -0.5174 32 1 -0.3633 -0.8920 -0.5102 33 1 1.6553 2.1327 0.0007 34 1 4.1164 2.1380 -0.0101 35 1 7.3583 -0.9083 -0.8570 36 1 5.8170 -1.2467 -1.6806 37 1 8.0329 1.3051 -4.9504 38 1 8.2751 -0.4415 0.8524 39 1 8.1480 1.2271 0.2458 40 1 9.8402 2.7026 3.9448 41 1 9.9665 1.0346 4.5530 42 1 12.1231 3.8460 4.1394 43 1 4.1163 -2.1382 0.0094 44 1 1.6551 -2.1327 0.0098 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002619478.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:04 Heat of formation + Delta-G solvation = 25.450744 kcal Electronic energy + Delta-G solvation = -31141.973735 eV Core-core repulsion = 26676.631004 eV Total energy + Delta-G solvation = -4465.342731 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 359.143 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -45.25398 -42.05706 -41.35035 -39.64849 -37.96971 -37.03427 -36.56605 -34.77646 -33.55144 -33.11796 -31.90556 -31.22768 -30.03783 -29.59614 -26.93715 -25.05688 -24.84224 -24.65806 -23.51823 -22.94358 -22.24980 -20.66302 -19.49554 -19.22685 -18.99272 -18.41652 -18.12591 -17.83726 -17.81394 -17.10919 -16.77884 -16.66913 -16.31922 -16.08257 -15.79360 -15.36039 -14.84370 -14.81336 -14.55110 -14.40931 -14.36381 -14.14379 -13.99937 -13.80547 -13.62390 -13.26196 -13.21702 -13.02029 -12.79930 -12.59646 -12.46354 -12.39003 -12.23860 -12.16782 -12.09918 -11.94847 -11.87787 -11.78875 -11.39913 -11.09462 -10.86103 -10.13614 -9.87166 -9.18373 -8.39079 -6.47729 0.07627 0.29662 0.47443 0.67643 0.81171 1.20079 1.25124 1.33025 1.34686 1.36759 1.42931 2.09524 2.25914 2.76330 2.95381 3.11030 3.33545 3.40372 3.47288 3.83257 3.92582 3.94234 3.97818 4.04820 4.07582 4.08162 4.31605 4.38114 4.47575 4.51411 4.62059 4.63451 4.75107 4.84636 4.92852 4.99968 5.12009 5.12972 5.16712 5.28837 5.38788 5.51035 5.66910 5.67802 5.98472 6.11952 6.27292 6.33246 6.57261 6.96887 7.18408 7.50383 8.76545 Molecular weight = 359.14amu Principal moments of inertia in cm(-1) A = 0.009576 B = 0.002767 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.395034 B =10117.385538 C =12277.449961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.094 4.094 3 C -0.116 4.116 4 C -0.124 4.124 5 C 0.124 3.876 6 N -0.549 5.549 7 C 0.214 3.786 8 C -0.545 4.545 9 H 0.036 0.964 10 C 0.026 3.974 11 N -0.936 5.936 12 Si 0.931 3.069 13 H -0.259 1.259 14 H -0.286 1.286 15 H -0.237 1.237 16 C 0.526 3.474 17 O -0.551 6.551 18 C 0.064 3.936 19 O -0.328 6.328 20 C 0.444 3.556 21 O -0.522 6.522 22 C 0.136 3.864 23 N -0.310 5.310 24 C 0.195 3.805 25 N -0.345 5.345 26 N -0.111 5.111 27 N -0.100 5.100 28 C -0.129 4.129 29 C -0.109 4.109 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.143 0.857 34 H 0.098 0.902 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.269 0.731 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.220 0.780 41 H 0.187 0.813 42 H 0.301 0.699 43 H 0.134 0.866 44 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.191 -0.788 16.977 18.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.094 4.094 3 C -0.135 4.135 4 C -0.143 4.143 5 C 0.034 3.966 6 N -0.277 5.277 7 C 0.093 3.907 8 C -0.583 4.583 9 H 0.054 0.946 10 C -0.174 4.174 11 N -0.574 5.574 12 Si 0.754 3.246 13 H -0.184 1.184 14 H -0.212 1.212 15 H -0.160 1.160 16 C 0.314 3.686 17 O -0.429 6.429 18 C -0.013 4.013 19 O -0.242 6.242 20 C 0.286 3.714 21 O -0.409 6.409 22 C 0.015 3.985 23 N -0.113 5.113 24 C -0.102 4.102 25 N -0.192 5.192 26 N -0.106 5.106 27 N -0.087 5.087 28 C -0.148 4.148 29 C -0.128 4.128 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.100 0.900 33 H 0.160 0.840 34 H 0.116 0.884 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.079 0.921 38 H 0.130 0.870 39 H 0.120 0.880 40 H 0.236 0.764 41 H 0.204 0.796 42 H 0.316 0.684 43 H 0.152 0.848 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -6.180 -1.599 16.695 17.874 hybrid contribution 0.155 0.323 -1.196 1.248 sum -6.025 -1.276 15.499 16.678 Atomic orbital electron populations 1.20815 0.88274 1.03903 1.03348 1.20348 0.98079 0.92364 0.98597 1.21138 0.92344 0.99412 1.00557 1.21262 0.95665 0.96733 1.00687 1.17831 0.82053 0.94479 1.02229 1.45368 1.04443 1.62278 1.15651 1.19870 0.92788 0.94979 0.83066 1.21391 1.37326 0.95239 1.04355 0.94597 1.25699 0.95147 1.01031 0.95532 1.70018 1.41841 1.33754 1.11820 0.85953 0.78519 0.79930 0.80221 1.18402 1.21231 1.16013 1.20073 0.89066 0.76893 0.82557 1.90658 1.70554 1.49724 1.32002 1.22651 0.91550 1.02887 0.84211 1.86422 1.23985 1.76654 1.37164 1.24214 0.80685 0.75461 0.91044 1.90866 1.60873 1.46667 1.42543 1.22071 0.70930 1.12323 0.93138 1.48478 1.10231 1.07869 1.44704 1.28913 0.85422 0.97295 0.98596 1.74914 1.20446 1.05609 1.18239 1.78656 1.11493 1.04450 1.15961 1.78965 0.97106 1.16599 1.16074 1.21390 0.95543 0.96660 1.01238 1.21224 0.92533 0.99148 0.99850 0.89890 0.90803 0.90030 0.83967 0.88377 0.92925 0.93146 0.92145 0.86984 0.87990 0.76378 0.79557 0.68447 0.84811 0.82499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 10.01 71.24 0.71 -0.97 16 2 C -0.09 -2.29 5.88 -19.85 -0.12 -2.41 16 3 C -0.12 -3.38 9.69 22.25 0.22 -3.16 16 4 C -0.12 -4.59 9.55 22.39 0.21 -4.38 16 5 C 0.12 4.70 4.75 38.16 0.18 4.88 16 6 N -0.55 -22.04 2.51 -635.30 -1.59 -23.63 16 7 C 0.21 9.04 3.95 85.63 0.34 9.38 16 8 C -0.54 -28.62 9.71 25.60 0.25 -28.37 16 9 H 0.04 2.16 8.06 -2.91 -0.02 2.13 16 10 C 0.03 1.40 5.47 84.65 0.46 1.87 16 11 N -0.94 -55.43 13.96 21.45 0.30 -55.13 16 12 Si 0.93 40.18 27.47 68.60 1.88 42.06 16 13 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 14 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 15 H -0.24 -9.14 6.54 99.48 0.65 -8.49 16 16 C 0.53 20.47 7.61 87.66 0.67 21.14 16 17 O -0.55 -23.02 16.26 15.75 0.26 -22.76 16 18 C 0.06 2.21 4.61 71.24 0.33 2.54 16 19 O -0.33 -9.16 9.76 -45.05 -0.44 -9.60 16 20 C 0.44 10.57 7.98 71.24 0.57 11.14 16 21 O -0.52 -17.88 15.46 21.95 0.34 -17.54 16 22 C 0.14 1.28 7.08 85.63 0.61 1.89 16 23 N -0.31 -5.40 3.19 -355.58 -1.13 -6.53 16 24 C 0.19 2.64 12.79 180.27 2.31 4.94 16 25 N -0.35 -8.57 12.36 -60.30 -0.75 -9.32 16 26 N -0.11 -3.45 13.43 37.01 0.50 -2.95 16 27 N -0.10 -2.83 12.31 37.02 0.46 -2.38 16 28 C -0.13 -4.02 9.69 22.39 0.22 -3.80 16 29 C -0.11 -2.73 9.69 22.25 0.22 -2.51 16 30 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.05 8.09 -2.39 -0.02 1.03 16 32 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 33 H 0.14 3.37 8.06 -2.91 -0.02 3.34 16 34 H 0.10 3.94 8.06 -2.91 -0.02 3.92 16 35 H 0.05 2.08 5.53 -2.39 -0.01 2.07 16 36 H 0.05 2.04 7.29 -2.39 -0.02 2.02 16 37 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 38 H 0.11 3.62 7.25 -2.38 -0.02 3.61 16 39 H 0.10 3.98 7.91 -2.39 -0.02 3.96 16 40 H 0.22 -0.55 8.08 -2.39 -0.02 -0.57 16 41 H 0.19 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.30 -0.44 8.06 -2.91 -0.02 -0.47 16 43 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 44 H 0.16 2.75 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -89.66 391.05 7.98 -81.68 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.99 Total: 13.94 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: 7.16 Total: 12.17 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -2.22 Total: -99.94 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: 0.16 Total: -49.91 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 1.88 Total: 42.06 kcal Total: -89.66 7.98 -81.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002619478.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.134 kcal (2) G-P(sol) polarization free energy of solvation -89.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds