Wall clock time and date at job start Tue Mar 31 2020 07:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31654 * 1 3 3 Si 1.86798 * 119.99585 * 2 1 4 4 H 1.48500 * 109.47139 * 240.27590 * 3 2 1 5 5 H 1.48506 * 109.47305 * 0.27649 * 3 2 1 6 6 H 1.48497 * 109.47301 * 120.27587 * 3 2 1 7 7 C 1.38632 * 120.00254 * 180.27540 * 2 1 3 8 8 H 1.08000 * 119.99752 * 179.72650 * 7 2 1 9 9 S 1.76199 * 119.99750 * 359.72382 * 7 2 1 10 10 C 1.76203 * 99.99651 * 180.02562 * 9 7 2 11 11 N 1.31567 * 126.38971 * 359.68275 * 10 9 7 12 12 N 1.28520 * 110.02893 * 179.85952 * 11 10 9 13 13 C 1.31505 * 109.95086 * 0.42092 * 12 11 10 14 14 C 1.47772 * 126.44563 * 179.71213 * 13 12 11 15 15 C 1.39623 * 120.13161 * 16.76341 * 14 13 12 16 16 C 1.37918 * 119.86073 * 179.71992 * 15 14 13 17 17 C 1.38495 * 120.13621 * 0.55080 * 16 15 14 18 18 Cl 1.73598 * 119.86505 * 179.69699 * 17 16 15 19 19 C 1.38484 * 120.26804 * 359.72383 * 17 16 15 20 20 C 1.37922 * 120.13746 * 359.97438 * 19 17 16 21 21 N 1.36752 * 126.39038 * 180.02562 * 10 9 7 22 22 C 1.46497 * 127.15370 * 0.02562 * 21 10 9 23 23 C 1.50703 * 109.47369 * 83.23505 * 22 21 10 24 24 C 1.34508 * 125.79294 * 96.75536 * 23 22 21 25 25 C 1.41383 * 106.83941 * 180.02562 * 24 23 22 26 26 C 1.34509 * 106.84406 * 359.97438 * 25 24 23 27 27 O 1.34303 * 125.78433 * 276.45098 * 23 22 21 28 28 H 0.97000 * 120.00756 * 359.72465 * 1 2 3 29 29 H 1.08002 * 120.07149 * 0.02562 * 15 14 13 30 30 H 1.08004 * 119.93442 * 180.25168 * 16 15 14 31 31 H 1.08007 * 119.93630 * 179.97438 * 19 17 16 32 32 H 1.08007 * 120.06737 * 180.02562 * 20 19 17 33 33 H 1.09002 * 109.46959 * 203.23086 * 22 21 10 34 34 H 1.09004 * 109.47408 * 323.22821 * 22 21 10 35 35 H 1.07996 * 126.57939 * 0.03434 * 24 23 22 36 36 H 1.08003 * 126.57610 * 179.97438 * 25 24 23 37 37 H 1.07996 * 125.79499 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3165 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 3.0991 1.6994 -1.2159 5 1 1.2853 2.7465 0.0068 6 1 3.1092 1.6936 1.2091 7 6 2.0098 -1.2005 -0.0058 8 1 3.0897 -1.2004 -0.0102 9 16 1.1288 -2.7265 -0.0057 10 6 2.4786 -3.8590 -0.0133 11 7 3.7573 -3.5493 -0.0234 12 7 4.4694 -4.6192 -0.0234 13 6 3.6889 -5.6776 -0.0225 14 6 4.1246 -7.0896 -0.0282 15 6 5.4377 -7.4193 0.3131 16 6 5.8368 -8.7395 0.3115 17 6 4.9413 -9.7362 -0.0387 18 17 5.4534 -11.3949 -0.0459 19 6 3.6392 -9.4149 -0.3837 20 6 3.2264 -8.0989 -0.3799 21 7 2.3926 -5.2238 -0.0165 22 6 1.1717 -6.0334 -0.0147 23 6 0.6562 -6.1681 -1.4244 24 6 0.8833 -7.2059 -2.2494 25 6 0.2176 -6.9179 -3.4629 26 6 -0.3771 -5.7215 -3.3068 27 8 -0.1128 -5.2747 -2.0681 28 1 -0.4851 0.8400 0.0040 29 1 6.1381 -6.6426 0.5825 30 1 6.8512 -8.9962 0.5792 31 1 2.9453 -10.1965 -0.6563 32 1 2.2104 -7.8497 -0.6487 33 1 1.3920 -7.0222 0.3875 34 1 0.4158 -5.5497 0.6040 35 1 1.4630 -8.0897 -2.0273 36 1 0.1915 -7.5392 -4.3459 37 1 -0.9705 -5.2093 -4.0497 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002621269.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:48 Heat of formation + Delta-G solvation = 122.799222 kcal Electronic energy + Delta-G solvation = -26401.799743 eV Core-core repulsion = 22492.869975 eV Total energy + Delta-G solvation = -3908.929768 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 361.039 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.70240 -42.01648 -39.30516 -36.70922 -35.32335 -33.02267 -32.71853 -32.13466 -31.32017 -30.37899 -28.76932 -26.40468 -25.74537 -23.50000 -23.45818 -21.83600 -21.67094 -20.82746 -20.47096 -18.30157 -17.55339 -17.53414 -16.78913 -16.05233 -15.75290 -15.68355 -15.38321 -14.98789 -14.87012 -14.41205 -14.22260 -13.99609 -13.68512 -13.27332 -13.11198 -12.80640 -12.70865 -12.30382 -11.93912 -11.79567 -11.63619 -11.50826 -11.15934 -11.15316 -10.95609 -10.80230 -10.27405 -10.01086 -9.97008 -9.96807 -9.86748 -9.30889 -9.25338 -8.93868 -8.61658 -8.41367 -6.81557 -6.52894 -4.27143 0.60308 1.05776 1.53141 1.88786 2.24467 2.34321 2.57294 2.97911 3.18138 3.19652 3.22009 3.27369 3.29681 3.72064 3.96130 4.29803 4.40063 4.50831 4.59866 4.63955 4.86786 4.91499 4.92952 4.98358 5.05812 5.12012 5.20529 5.38741 5.62295 5.70812 5.73898 5.82304 5.84855 5.96953 6.01926 6.13730 6.37605 6.44165 6.49821 6.55536 7.11043 7.14766 7.51300 8.30681 8.98902 9.28076 10.54911 Molecular weight = 361.04amu Principal moments of inertia in cm(-1) A = 0.013164 B = 0.003018 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.434698 B = 9276.212772 C =11024.121485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.078 3.922 3 Si 0.933 3.067 4 H -0.269 1.269 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.538 4.538 8 H 0.105 0.895 9 S 0.161 5.839 10 C 0.181 3.819 11 N -0.303 5.303 12 N -0.259 5.259 13 C 0.163 3.837 14 C 0.024 3.976 15 C -0.075 4.075 16 C -0.103 4.103 17 C -0.038 4.038 18 Cl -0.074 7.074 19 C -0.102 4.102 20 C -0.133 4.133 21 N -0.474 5.474 22 C 0.182 3.818 23 C -0.039 4.039 24 C -0.197 4.197 25 C -0.222 4.222 26 C -0.019 4.019 27 O -0.148 6.148 28 H 0.276 0.724 29 H 0.146 0.854 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.146 0.854 33 H 0.129 0.871 34 H 0.116 0.884 35 H 0.153 0.847 36 H 0.149 0.851 37 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.039 -20.098 -2.289 20.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.132 4.132 3 Si 0.758 3.242 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.687 4.687 8 H 0.123 0.877 9 S 0.396 5.604 10 C -0.188 4.188 11 N -0.150 5.150 12 N -0.101 5.101 13 C -0.103 4.103 14 C 0.021 3.979 15 C -0.095 4.095 16 C -0.121 4.121 17 C -0.065 4.065 18 Cl -0.046 7.046 19 C -0.121 4.121 20 C -0.152 4.152 21 N -0.172 5.172 22 C 0.058 3.942 23 C -0.091 4.091 24 C -0.217 4.217 25 C -0.241 4.241 26 C -0.089 4.089 27 O -0.041 6.041 28 H 0.085 0.915 29 H 0.163 0.837 30 H 0.156 0.844 31 H 0.154 0.846 32 H 0.163 0.837 33 H 0.147 0.853 34 H 0.134 0.866 35 H 0.171 0.829 36 H 0.167 0.833 37 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.833 -19.033 -2.136 19.170 hybrid contribution 0.655 0.082 -0.342 0.743 sum 1.488 -18.951 -2.478 19.170 Atomic orbital electron populations 1.69940 1.06060 1.28688 1.46407 1.25065 0.95186 0.99656 0.93291 0.85967 0.79092 0.79535 0.79601 1.19385 1.20735 1.19345 1.23214 0.97310 0.89258 1.58904 0.87659 1.83566 0.97034 0.95208 1.84632 1.28579 1.02419 0.85355 1.02462 1.74827 0.98884 1.18179 1.23060 1.74237 1.26600 0.94329 1.14931 1.22432 0.80970 0.94875 1.11974 1.17567 0.94106 0.87154 0.99078 1.21197 0.94914 0.95932 0.97459 1.20998 0.99743 0.91379 1.00007 1.21008 0.95065 0.85410 1.05063 1.98367 1.91108 1.17968 1.97125 1.20873 0.94423 0.96491 1.00330 1.21812 1.00820 0.91838 1.00768 1.46295 1.05959 1.05821 1.59146 1.20291 0.85496 0.97998 0.90377 1.22343 0.99774 0.90678 0.96334 1.21786 1.04906 1.00735 0.94270 1.21782 1.03956 0.98598 0.99803 1.24214 1.02926 0.96036 0.85682 1.84208 1.53416 1.42551 1.23968 0.91470 0.83661 0.84399 0.84554 0.83679 0.85312 0.86580 0.82942 0.83319 0.77879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.04 13.22 55.48 0.73 -23.30 16 2 C 0.08 2.08 5.49 -17.48 -0.10 1.99 16 3 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.54 -14.87 9.37 30.88 0.29 -14.58 16 8 H 0.11 3.01 6.92 -52.49 -0.36 2.64 16 9 S 0.16 3.94 21.55 -107.50 -2.32 1.63 16 10 C 0.18 4.13 8.06 -87.90 -0.71 3.42 16 11 N -0.30 -7.51 11.03 30.77 0.34 -7.17 16 12 N -0.26 -5.70 11.99 32.57 0.39 -5.31 16 13 C 0.16 2.99 7.71 -153.81 -1.19 1.81 16 14 C 0.02 0.34 5.87 -104.97 -0.62 -0.28 16 15 C -0.07 -0.93 9.70 -39.18 -0.38 -1.31 16 16 C -0.10 -1.05 9.81 -39.60 -0.39 -1.44 16 17 C -0.04 -0.38 6.33 -39.40 -0.25 -0.63 16 18 Cl -0.07 -0.67 28.95 -51.86 -1.50 -2.17 16 19 C -0.10 -0.98 9.81 -39.61 -0.39 -1.37 16 20 C -0.13 -1.49 8.17 -39.18 -0.32 -1.81 16 21 N -0.47 -8.76 2.82 -115.31 -0.32 -9.08 16 22 C 0.18 2.54 5.77 -5.19 -0.03 2.51 16 23 C -0.04 -0.56 6.88 -35.63 -0.25 -0.80 16 24 C -0.20 -2.40 9.82 -39.70 -0.39 -2.79 16 25 C -0.22 -2.55 10.91 -39.70 -0.43 -2.99 16 26 C -0.02 -0.24 12.09 29.41 0.36 0.12 16 27 O -0.15 -2.34 10.65 5.70 0.06 -2.28 16 28 H 0.28 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.15 1.83 7.95 -52.49 -0.42 1.41 16 30 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16 31 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 32 H 0.15 1.51 1.63 -52.48 -0.09 1.42 16 33 H 0.13 1.34 5.38 -51.93 -0.28 1.06 16 34 H 0.12 1.55 8.07 -51.93 -0.42 1.14 16 35 H 0.15 1.51 5.77 -52.49 -0.30 1.21 16 36 H 0.15 1.31 8.06 -52.48 -0.42 0.89 16 37 H 0.20 1.81 8.06 -52.49 -0.42 1.39 16 LS Contribution 353.14 15.07 5.32 5.32 Total: -1.00 -32.53 353.14 -9.80 -42.33 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -2.69 Total: 2.17 kcal Atomic # 6 Polarization: -13.37 SS G_CDS: -4.79 Total: -18.16 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 1.14 Total: -44.86 kcal Atomic # 8 Polarization: -2.34 SS G_CDS: 0.06 Total: -2.28 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 3.94 SS G_CDS: -2.32 Total: 1.63 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -1.50 Total: -2.17 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.53 -9.80 -42.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002621269.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.132 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds