Wall clock time and date at job start Tue Mar 31 2020 06:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35953 * 117.00232 * 2 1 4 4 C 1.38073 * 120.00057 * 0.02562 * 3 2 1 5 5 C 1.39987 * 119.84136 * 180.25444 * 4 3 2 6 6 C 1.46951 * 120.08023 * 179.72583 * 5 4 3 7 7 C 1.35062 * 119.99767 * 179.97438 * 6 5 4 8 8 C 1.46185 * 119.99746 * 180.02562 * 7 6 5 9 9 O 1.21741 * 120.00033 * 0.02562 * 8 7 6 10 10 N 1.34780 * 120.00296 * 179.97438 * 8 7 6 11 11 C 1.38841 * 120.00263 * 179.97438 * 10 8 7 12 12 N 1.29657 * 124.94443 * 179.71933 * 11 10 8 13 13 C 1.31994 * 116.90876 * 179.84190 * 12 11 10 14 14 C 1.50704 * 122.71686 * 180.21302 * 13 12 11 15 15 C 1.33439 * 114.56807 * 0.45334 * 13 12 11 16 16 S 1.70964 * 124.94828 * 0.03342 * 11 10 8 17 17 C 1.40043 * 119.83707 * 359.42062 * 5 4 3 18 18 C 1.37641 * 120.00017 * 0.58345 * 17 5 4 19 19 C 1.39067 * 120.16089 * 359.71681 * 18 17 5 20 20 O 1.35611 * 119.91923 * 180.02562 * 19 18 17 21 21 C 1.34758 * 116.99934 * 354.37747 * 20 19 18 22 22 H 1.07999 * 120.00119 * 5.06579 * 21 20 19 23 23 C 1.38704 * 120.00057 * 185.06732 * 21 20 19 24 24 N 1.31525 * 120.00164 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 120.00336 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47135 * 59.99669 * 25 23 21 27 27 H 1.48493 * 109.47453 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.46907 * 300.00211 * 25 23 21 29 29 H 1.09001 * 109.47192 * 59.99664 * 1 2 3 30 30 H 1.08996 * 109.47532 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47049 * 300.00158 * 1 2 3 32 32 H 1.08002 * 120.08039 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.99597 * 0.02562 * 6 5 4 34 34 H 1.07998 * 120.00110 * 0.02562 * 7 6 5 35 35 H 0.97006 * 119.99442 * 0.02562 * 10 8 7 36 36 H 1.09001 * 109.47237 * 270.26005 * 14 13 12 37 37 H 1.09005 * 109.46538 * 30.25494 * 14 13 12 38 38 H 1.08999 * 109.47089 * 150.25238 * 14 13 12 39 39 H 1.08000 * 125.96317 * 179.78824 * 15 13 12 40 40 H 1.07995 * 119.99692 * 180.32024 * 17 5 4 41 41 H 1.07998 * 119.92068 * 179.69521 * 18 17 5 42 42 H 0.96996 * 120.00263 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2943 2.3693 0.0005 5 6 1.9333 3.6148 -0.0049 6 6 1.1381 4.8506 -0.0104 7 6 1.7564 6.0514 -0.0151 8 6 0.9654 7.2808 -0.0200 9 8 -0.2506 7.2222 -0.0195 10 7 1.5823 8.4791 -0.0242 11 6 0.8310 9.6467 -0.0294 12 7 1.3229 10.8463 -0.0285 13 6 0.4605 11.8455 -0.0373 14 6 0.8883 13.2906 -0.0421 15 6 -0.8207 11.4727 -0.0365 16 16 -0.8774 9.7120 -0.0304 17 6 3.3322 3.6803 0.0015 18 6 4.0753 2.5217 0.0009 19 6 3.4405 1.2844 -0.0001 20 8 4.1775 0.1460 -0.0001 21 6 5.5131 0.2820 -0.1169 22 1 5.9573 1.2664 -0.1225 23 6 6.3174 -0.8424 -0.2298 24 7 5.7766 -2.0413 -0.2224 25 14 8.1689 -0.6541 -0.3909 26 1 8.7008 0.0489 0.8042 27 1 8.7958 -1.9962 -0.4948 28 1 8.4820 0.1348 -1.6094 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2156 2.3144 0.0005 33 1 0.0594 4.7986 -0.0099 34 1 2.8351 6.1034 -0.0152 35 1 2.5512 8.5257 -0.0242 36 1 0.9910 13.6426 0.9844 37 1 1.8450 13.3845 -0.5559 38 1 0.1383 13.8898 -0.5584 39 1 -1.6740 12.1348 -0.0396 40 1 3.8278 4.6398 0.0026 41 1 5.1541 2.5737 0.0008 42 1 6.3391 -2.8276 -0.3010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002661295.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:39 Heat of formation + Delta-G solvation = -2.892315 kcal Electronic energy + Delta-G solvation = -27306.566029 eV Core-core repulsion = 23152.735709 eV Total energy + Delta-G solvation = -4153.830321 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 360.098 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.60920 -39.82751 -39.49286 -37.78136 -36.72655 -35.23100 -33.26746 -32.41384 -31.40765 -29.84939 -28.87999 -27.74094 -26.77167 -25.80116 -24.94811 -23.10683 -21.94786 -21.57295 -20.54436 -19.06748 -18.40038 -18.31383 -17.75912 -17.09296 -16.73253 -16.10354 -15.89844 -15.53128 -15.28654 -14.91445 -14.68411 -14.55885 -14.26106 -14.08467 -13.91034 -13.70292 -13.55846 -13.23587 -12.95995 -12.74396 -12.55703 -12.30451 -11.93087 -11.81722 -11.61379 -11.52079 -11.17157 -11.15476 -10.97960 -10.88197 -10.79392 -10.59360 -10.10774 -9.89214 -9.70274 -9.58341 -9.31701 -8.96971 -8.37377 -8.08623 -7.03327 -6.72144 -4.22093 0.47178 0.91089 1.03066 1.78141 2.02236 2.22930 2.51340 2.67508 2.99506 3.00984 3.04223 3.29249 3.75163 3.86174 4.29193 4.35455 4.68189 4.80259 4.91276 4.99136 5.04946 5.12792 5.30511 5.33480 5.43023 5.45703 5.46630 5.48109 5.53769 5.58610 5.75612 5.76896 5.86993 6.09061 6.11359 6.17013 6.34356 6.42383 6.68889 6.81925 6.91217 6.98682 7.13538 7.36809 7.62924 7.68079 7.72993 7.98795 8.70280 9.37745 10.42916 Molecular weight = 360.10amu Principal moments of inertia in cm(-1) A = 0.015734 B = 0.001761 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.107467 B =15897.821608 C =17651.241114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.052 3.948 4 C -0.132 4.132 5 C -0.177 4.177 6 C 0.060 3.940 7 C -0.289 4.289 8 C 0.557 3.443 9 O -0.524 6.524 10 N -0.624 5.624 11 C 0.253 3.747 12 N -0.521 5.521 13 C 0.090 3.910 14 C -0.077 4.077 15 C -0.332 4.332 16 S 0.240 5.760 17 C -0.052 4.052 18 C -0.228 4.228 19 C 0.150 3.850 20 O -0.142 6.142 21 C -0.390 4.390 22 H 0.099 0.901 23 C 0.042 3.958 24 N -0.840 5.840 25 Si 0.946 3.054 26 H -0.266 1.266 27 H -0.275 1.275 28 H -0.266 1.266 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.047 0.953 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.424 0.576 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.172 0.828 40 H 0.117 0.883 41 H 0.138 0.862 42 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.489 19.701 0.197 21.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.007 3.993 4 C -0.152 4.152 5 C -0.179 4.179 6 C 0.040 3.960 7 C -0.310 4.310 8 C 0.351 3.649 9 O -0.402 6.402 10 N -0.272 5.272 11 C -0.114 4.114 12 N -0.245 5.245 13 C -0.043 4.043 14 C -0.136 4.136 15 C -0.472 4.472 16 S 0.490 5.510 17 C -0.070 4.070 18 C -0.247 4.247 19 C 0.093 3.907 20 O -0.042 6.042 21 C -0.465 4.465 22 H 0.116 0.884 23 C -0.166 4.166 24 N -0.471 5.471 25 Si 0.770 3.230 26 H -0.191 1.191 27 H -0.200 1.200 28 H -0.191 1.191 29 H 0.066 0.934 30 H 0.111 0.889 31 H 0.066 0.934 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.150 0.850 35 H 0.263 0.737 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.190 0.810 40 H 0.135 0.865 41 H 0.156 0.844 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.383 18.087 0.209 20.856 hybrid contribution 1.589 1.219 -0.065 2.004 sum -8.794 19.306 0.145 21.215 Atomic orbital electron populations 1.22927 0.80066 1.03166 1.00443 1.86237 1.19659 1.26142 1.89683 1.18033 0.89347 0.84658 1.07289 1.20874 0.98638 0.90860 1.04820 1.18091 0.92772 0.91222 1.15796 1.22297 0.99291 0.90829 0.83605 1.22080 0.99919 0.90118 1.18889 1.18764 0.87919 0.83205 0.75055 1.90724 1.13934 1.85651 1.49937 1.42831 1.11041 1.01957 1.71413 1.23456 0.95926 0.89436 1.02598 1.66194 1.38448 0.96635 1.23248 1.19801 0.88070 0.95587 1.00821 1.20340 1.02307 0.88201 1.02780 1.27214 1.01378 1.01348 1.17249 1.84982 1.00153 0.98097 1.67730 1.20953 0.92450 0.97440 0.96197 1.20829 1.00783 0.90706 1.12392 1.18907 0.88283 0.87604 0.95931 1.83980 1.19830 1.26056 1.74288 1.21528 0.78277 0.95199 1.51501 0.88367 1.25455 1.01096 0.94107 0.95907 1.70034 1.36998 0.97915 1.42134 0.85689 0.79458 0.78340 0.79525 1.19135 1.19991 1.19121 0.93392 0.88908 0.93403 0.85747 0.85638 0.84967 0.73719 0.90793 0.90785 0.90785 0.81036 0.86478 0.84414 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 9.81 101.05 0.99 1.40 16 2 O -0.30 -6.20 10.28 -34.21 -0.35 -6.55 16 3 C 0.05 1.06 6.70 -39.13 -0.26 0.80 16 4 C -0.13 -2.23 8.77 -38.99 -0.34 -2.57 16 5 C -0.18 -2.82 5.87 -105.04 -0.62 -3.43 16 6 C 0.06 0.81 9.45 -37.18 -0.35 0.45 16 7 C -0.29 -3.50 9.40 -37.52 -0.35 -3.85 16 8 C 0.56 7.12 7.70 -13.07 -0.10 7.02 16 9 O -0.52 -7.81 13.69 5.15 0.07 -7.74 16 10 N -0.62 -7.12 5.39 -14.42 -0.08 -7.20 16 11 C 0.25 3.22 8.19 -87.48 -0.72 2.50 16 12 N -0.52 -6.66 10.58 -11.31 -0.12 -6.78 16 13 C 0.09 0.97 6.74 -84.20 -0.57 0.41 16 14 C -0.08 -0.57 10.31 36.01 0.37 -0.20 16 15 C -0.33 -3.30 11.11 29.05 0.32 -2.98 16 16 S 0.24 2.82 20.21 -107.50 -2.17 0.65 16 17 C -0.05 -0.85 9.40 -39.12 -0.37 -1.22 16 18 C -0.23 -4.45 9.14 -39.49 -0.36 -4.81 16 19 C 0.15 3.43 6.67 -38.76 -0.26 3.17 16 20 O -0.14 -3.84 9.52 -13.93 -0.13 -3.97 16 21 C -0.39 -10.10 9.48 30.90 0.29 -9.80 16 22 H 0.10 2.28 5.18 -52.49 -0.27 2.01 16 23 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 24 N -0.84 -23.15 13.67 55.48 0.76 -22.40 16 25 Si 0.95 18.90 29.55 -169.99 -5.02 13.88 16 26 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 27 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 28 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 29 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.05 0.58 7.66 -51.93 -0.40 0.19 16 32 H 0.12 1.73 6.28 -52.49 -0.33 1.40 16 33 H 0.13 1.62 7.52 -52.49 -0.39 1.22 16 34 H 0.13 1.36 6.06 -52.49 -0.32 1.04 16 35 H 0.42 3.79 8.80 -40.82 -0.36 3.43 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 39 H 0.17 1.23 8.06 -52.49 -0.42 0.80 16 40 H 0.12 1.53 6.15 -52.49 -0.32 1.21 16 41 H 0.14 2.62 5.61 -52.49 -0.29 2.32 16 42 H 0.28 6.95 8.31 -40.82 -0.34 6.62 16 LS Contribution 378.28 15.07 5.70 5.70 Total: -1.00 -31.65 378.28 -8.10 -39.74 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -4.33 Total: 6.78 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -2.41 Total: -12.13 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.56 Total: -36.37 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: -0.41 Total: -18.26 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.02 Total: 13.88 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -2.17 Total: 0.65 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.65 -8.10 -39.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002661295.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.849 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds