Wall clock time and date at job start Tue Mar 31 2020 07:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99883 * 2 1 4 4 C 1.50703 * 109.47157 * 270.00339 * 3 2 1 5 5 H 1.08004 * 120.00067 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99968 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00144 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99992 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47186 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47507 * 120.00303 * 8 6 4 11 11 H 1.48499 * 109.47075 * 240.00069 * 8 6 4 12 12 C 1.34775 * 120.00217 * 180.02562 * 2 1 3 13 13 O 1.21274 * 120.00109 * 179.97438 * 12 2 1 14 14 C 1.50699 * 119.99704 * 359.97438 * 12 2 1 15 15 O 1.42898 * 109.46916 * 180.02562 * 14 12 2 16 16 C 1.35942 * 117.00105 * 179.97438 * 15 14 12 17 17 C 1.38709 * 120.04908 * 0.26119 * 16 15 14 18 18 C 1.38145 * 119.96735 * 180.27438 * 17 16 15 19 19 C 1.38358 * 120.06743 * 359.46217 * 18 17 16 20 20 Br 1.89099 * 119.95172 * 180.27904 * 19 18 17 21 21 C 1.38331 * 120.09604 * 0.25883 * 19 18 17 22 22 C 1.38244 * 120.03299 * 0.02562 * 21 19 18 23 23 Cl 1.73603 * 120.03371 * 180.02562 * 22 21 19 24 24 H 1.09003 * 109.46932 * 269.99745 * 1 2 3 25 25 H 1.08999 * 109.47457 * 29.99722 * 1 2 3 26 26 H 1.08997 * 109.47464 * 149.99931 * 1 2 3 27 27 H 1.09007 * 109.47277 * 29.99999 * 3 2 1 28 28 H 1.08995 * 109.47088 * 150.00590 * 3 2 1 29 29 H 0.96997 * 119.99962 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.47694 * 60.00147 * 14 12 2 31 31 H 1.09002 * 109.47107 * 300.00247 * 14 12 2 32 32 H 1.07997 * 120.01537 * 359.97438 * 17 16 15 33 33 H 1.08002 * 119.96985 * 179.74755 * 18 17 16 34 34 H 1.07998 * 119.97907 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0973 1.0963 -2.2418 6 6 3.1259 2.8781 -1.6728 7 7 3.5532 3.6182 -0.6732 8 14 3.4377 3.4170 -3.4339 9 1 2.8617 2.4159 -4.3673 10 1 2.7997 4.7374 -3.6680 11 1 4.9003 3.5259 -3.6666 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1671 -0.0010 14 6 1.3854 -2.4722 -0.0005 15 8 2.3140 -3.5584 -0.0005 16 6 1.7945 -4.8146 0.0000 17 6 0.4195 -4.9976 -0.0049 18 6 -0.1066 -6.2749 0.0014 19 6 0.7365 -7.3719 0.0014 20 35 0.0127 -9.1189 0.0020 21 6 2.1081 -7.1926 0.0005 22 6 2.6391 -5.9162 0.0001 23 17 4.3604 -5.6911 -0.0017 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1384 0.5137 29 1 4.0294 4.4444 -0.8504 30 1 0.7584 -2.5299 -0.8902 31 1 0.7591 -2.5301 0.8897 32 1 -0.2393 -4.1419 -0.0088 33 1 -1.1772 -6.4174 0.0016 34 1 2.7645 -8.0502 0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000002860657.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:30 Heat of formation + Delta-G solvation = -42.871310 kcal Electronic energy + Delta-G solvation = -21024.448706 eV Core-core repulsion = 17416.428768 eV Total energy + Delta-G solvation = -3608.019938 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 360.987 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.65310 -39.06831 -37.58862 -36.55210 -34.94015 -32.72097 -32.18899 -31.40156 -29.76122 -28.56302 -27.22165 -25.76903 -23.57470 -22.82113 -22.13475 -18.84806 -18.77147 -16.79599 -16.75300 -16.49371 -16.25633 -15.98184 -15.29437 -14.95029 -14.54668 -14.34293 -14.31111 -13.63889 -13.37361 -12.61364 -12.53908 -12.39145 -12.27644 -12.12586 -11.99697 -11.64642 -11.48405 -11.27638 -10.97717 -10.92387 -10.66106 -10.65683 -10.59756 -10.21532 -9.68721 -9.33576 -9.07795 -8.49190 -8.45486 -7.80475 -6.10035 -4.15199 0.66511 0.69257 1.19726 2.00800 2.62520 3.05112 3.17175 3.27000 3.35322 3.39132 3.90082 4.29266 4.38202 4.40872 4.63062 4.81196 4.90565 4.93547 5.02454 5.19503 5.25082 5.30694 5.45880 5.61178 5.69553 5.76135 6.00356 6.06000 6.80878 7.01285 7.33240 7.40839 7.85646 8.14769 8.20904 8.78695 8.93321 9.50179 10.98217 Molecular weight = 360.99amu Principal moments of inertia in cm(-1) A = 0.021178 B = 0.002146 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.808088 B =13042.936554 C =13620.974613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.598 5.598 3 C 0.246 3.754 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.506 3.494 13 O -0.512 6.512 14 C 0.037 3.963 15 O -0.268 6.268 16 C 0.163 3.837 17 C -0.198 4.198 18 C -0.043 4.043 19 C -0.127 4.127 20 Br -0.044 7.044 21 C -0.043 4.043 22 C -0.068 4.068 23 Cl -0.037 7.037 24 H 0.048 0.952 25 H 0.079 0.921 26 H 0.054 0.946 27 H 0.036 0.964 28 H 0.046 0.954 29 H 0.264 0.736 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.148 0.852 33 H 0.142 0.858 34 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.975 -25.285 3.178 28.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.332 5.332 3 C 0.128 3.872 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.208 1.208 12 C 0.290 3.710 13 O -0.387 6.387 14 C -0.042 4.042 15 O -0.179 6.179 16 C 0.114 3.886 17 C -0.217 4.217 18 C -0.063 4.063 19 C -0.206 4.206 20 Br 0.041 6.959 21 C -0.064 4.064 22 C -0.096 4.096 23 Cl -0.008 7.008 24 H 0.067 0.933 25 H 0.098 0.902 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.110 0.890 31 H 0.108 0.892 32 H 0.165 0.835 33 H 0.159 0.841 34 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.118 -25.636 3.225 28.129 hybrid contribution 0.103 0.864 -0.992 1.320 sum -11.015 -24.772 2.232 27.203 Atomic orbital electron populations 1.21720 0.81230 1.02854 1.00729 1.48097 1.06267 1.07228 1.71613 1.19370 0.92656 0.77407 0.97788 1.21443 1.36798 1.06365 0.92163 0.92347 1.24939 0.95232 0.96356 0.97557 1.69935 1.38249 1.14317 1.30733 0.86424 0.78187 0.78293 0.84416 1.19776 1.20919 1.20798 1.19597 0.88183 0.84094 0.79131 1.90747 1.13302 1.86520 1.48146 1.22849 0.92172 0.85878 1.03269 1.86331 1.34299 1.10690 1.86568 1.18929 0.91374 0.85038 0.93216 1.21285 0.93177 0.98732 1.08540 1.20975 1.00142 0.90367 0.94790 1.21474 0.94476 0.91769 1.12921 1.96725 1.84827 1.16439 1.97937 1.20819 0.93626 0.95539 0.96373 1.20105 0.86491 0.91890 1.11118 1.98415 1.08144 1.97343 1.96868 0.93308 0.90176 0.92707 0.94565 0.93608 0.92664 0.89036 0.89172 0.83464 0.84063 0.83391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.09 10.24 59.85 0.61 1.70 16 2 N -0.60 -11.99 2.86 -182.95 -0.52 -12.51 16 3 C 0.25 6.26 5.16 -5.19 -0.03 6.23 16 4 C -0.53 -14.70 9.39 -34.44 -0.32 -15.02 16 5 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 6 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 8 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 9 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 12 C 0.51 10.21 7.75 -10.99 -0.09 10.12 16 13 O -0.51 -13.08 16.08 -14.35 -0.23 -13.31 16 14 C 0.04 0.51 3.77 36.01 0.14 0.65 16 15 O -0.27 -4.23 9.13 -39.47 -0.36 -4.59 16 16 C 0.16 2.06 6.68 -39.20 -0.26 1.80 16 17 C -0.20 -1.86 9.04 -39.44 -0.36 -2.21 16 18 C -0.04 -0.36 9.78 -39.57 -0.39 -0.74 16 19 C -0.13 -1.15 6.22 -39.50 -0.25 -1.40 16 20 Br -0.04 -0.35 33.70 -68.01 -2.29 -2.64 16 21 C -0.04 -0.43 9.56 -39.55 -0.38 -0.81 16 22 C -0.07 -0.83 6.33 -39.37 -0.25 -1.08 16 23 Cl -0.04 -0.50 28.50 -51.86 -1.48 -1.98 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 1.16 8.07 -51.93 -0.42 0.74 16 26 H 0.05 0.57 6.44 -51.93 -0.33 0.23 16 27 H 0.04 0.92 8.07 -51.92 -0.42 0.50 16 28 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.09 1.02 6.91 -51.93 -0.36 0.66 16 31 H 0.09 0.94 7.64 -51.93 -0.40 0.55 16 32 H 0.15 1.03 6.30 -52.49 -0.33 0.70 16 33 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 335.03 15.07 5.05 5.05 Total: -1.00 -33.61 335.03 -9.24 -42.85 By element: Atomic # 1 Polarization: -1.42 SS G_CDS: -3.46 Total: -4.88 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -1.66 Total: 0.88 kcal Atomic # 7 Polarization: -38.20 SS G_CDS: 0.21 Total: -37.99 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.59 Total: -17.90 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.48 Total: -1.98 kcal Atomic # 35 Polarization: -0.35 SS G_CDS: -2.29 Total: -2.64 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.61 -9.24 -42.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002860657.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.020 kcal (2) G-P(sol) polarization free energy of solvation -33.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds