Wall clock time and date at job start Tue Mar 31 2020 07:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46499 * 119.99883 * 2 1 4 4 C 1.50703 * 109.47157 * 270.00339 * 3 2 1 5 5 H 1.08004 * 120.00067 * 0.02562 * 4 3 2 6 6 C 1.37878 * 119.99968 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00144 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99992 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47186 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47507 * 120.00303 * 8 6 4 11 11 H 1.48499 * 109.47075 * 240.00069 * 8 6 4 12 12 C 1.34775 * 120.00217 * 180.02562 * 2 1 3 13 13 O 1.21274 * 120.00109 * 179.97438 * 12 2 1 14 14 C 1.50699 * 119.99704 * 359.97438 * 12 2 1 15 15 O 1.42898 * 109.46916 * 180.02562 * 14 12 2 16 16 C 1.35942 * 117.00105 * 179.97438 * 15 14 12 17 17 C 1.38709 * 120.04908 * 0.26119 * 16 15 14 18 18 C 1.38145 * 119.96735 * 180.27438 * 17 16 15 19 19 C 1.38358 * 120.06743 * 359.46217 * 18 17 16 20 20 Br 1.89099 * 119.95172 * 180.27904 * 19 18 17 21 21 C 1.38331 * 120.09604 * 0.25883 * 19 18 17 22 22 C 1.38244 * 120.03299 * 0.02562 * 21 19 18 23 23 Cl 1.73603 * 120.03371 * 180.02562 * 22 21 19 24 24 H 1.09003 * 109.46932 * 269.99745 * 1 2 3 25 25 H 1.08999 * 109.47457 * 29.99722 * 1 2 3 26 26 H 1.08997 * 109.47464 * 149.99931 * 1 2 3 27 27 H 1.09007 * 109.47277 * 29.99999 * 3 2 1 28 28 H 1.08995 * 109.47088 * 150.00590 * 3 2 1 29 29 H 0.96997 * 119.99962 * 180.02562 * 7 6 4 30 30 H 1.08996 * 109.47694 * 60.00147 * 14 12 2 31 31 H 1.09002 * 109.47107 * 300.00247 * 14 12 2 32 32 H 1.07997 * 120.01537 * 359.97438 * 17 16 15 33 33 H 1.08002 * 119.96985 * 179.74755 * 18 17 16 34 34 H 1.07998 * 119.97907 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0973 1.0963 -2.2418 6 6 3.1259 2.8781 -1.6728 7 7 3.5532 3.6182 -0.6732 8 14 3.4377 3.4170 -3.4339 9 1 2.8617 2.4159 -4.3673 10 1 2.7997 4.7374 -3.6680 11 1 4.9003 3.5259 -3.6666 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1671 -0.0010 14 6 1.3854 -2.4722 -0.0005 15 8 2.3140 -3.5584 -0.0005 16 6 1.7945 -4.8146 0.0000 17 6 0.4195 -4.9976 -0.0049 18 6 -0.1066 -6.2749 0.0014 19 6 0.7365 -7.3719 0.0014 20 35 0.0127 -9.1189 0.0020 21 6 2.1081 -7.1926 0.0005 22 6 2.6391 -5.9162 0.0001 23 17 4.3604 -5.6911 -0.0017 24 1 -0.3633 0.0000 1.0277 25 1 -0.3634 0.8900 -0.5138 26 1 -0.3634 -0.8899 -0.5138 27 1 1.6084 2.0284 0.5139 28 1 3.1499 1.1384 0.5137 29 1 4.0294 4.4444 -0.8504 30 1 0.7584 -2.5299 -0.8902 31 1 0.7591 -2.5301 0.8897 32 1 -0.2393 -4.1419 -0.0088 33 1 -1.1772 -6.4174 0.0016 34 1 2.7645 -8.0502 0.0009 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002860657.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:29 Heat of formation + Delta-G solvation = -63.353410 kcal Electronic energy + Delta-G solvation = -21025.336877 eV Core-core repulsion = 17416.428768 eV Total energy + Delta-G solvation = -3608.908109 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 360.987 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.61806 -40.44200 -38.61221 -37.47676 -36.62809 -34.76776 -32.94657 -32.16094 -31.02321 -29.74187 -28.54133 -27.24302 -24.99695 -23.93637 -23.13105 -20.30152 -19.68936 -18.72772 -17.97232 -17.51655 -17.47315 -17.06072 -16.85820 -16.12601 -15.83348 -15.72281 -15.07879 -14.69741 -14.66367 -14.15182 -13.84724 -13.74927 -13.48438 -13.12896 -13.11770 -13.00896 -12.83497 -12.58330 -12.47753 -12.44195 -12.22437 -11.90926 -11.69147 -11.32927 -11.30928 -10.69050 -10.66103 -10.09334 -9.48611 -9.27869 -8.24107 -6.38531 -0.10115 -0.04839 0.49626 1.12262 1.35822 1.38931 1.49230 1.56777 1.69081 2.30843 2.36136 2.62593 3.06283 3.43731 3.60632 3.76905 3.94216 3.97783 4.06571 4.13982 4.43310 4.50387 4.57335 4.74380 4.94189 4.95874 4.97073 5.00523 5.21075 5.30930 5.52478 5.78385 6.03265 6.05348 6.64865 6.72245 7.24815 7.39401 8.83391 Molecular weight = 360.99amu Principal moments of inertia in cm(-1) A = 0.021178 B = 0.002146 C = 0.002055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.808088 B =13042.936554 C =13620.974613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.603 5.603 3 C 0.259 3.741 4 C -0.542 4.542 5 H 0.055 0.945 6 C 0.007 3.993 7 N -0.928 5.928 8 Si 0.967 3.033 9 H -0.266 1.266 10 H -0.267 1.267 11 H -0.285 1.285 12 C 0.493 3.507 13 O -0.584 6.584 14 C 0.050 3.950 15 O -0.307 6.307 16 C 0.140 3.860 17 C -0.186 4.186 18 C -0.034 4.034 19 C -0.128 4.128 20 Br -0.031 7.031 21 C -0.044 4.044 22 C -0.087 4.087 23 Cl -0.064 7.064 24 H 0.079 0.921 25 H 0.070 0.930 26 H 0.101 0.899 27 H 0.031 0.969 28 H -0.004 1.004 29 H 0.267 0.733 30 H 0.129 0.871 31 H 0.134 0.866 32 H 0.180 0.820 33 H 0.173 0.827 34 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.397 -26.837 2.292 31.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.336 5.336 3 C 0.137 3.863 4 C -0.580 4.580 5 H 0.073 0.927 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.792 3.208 9 H -0.190 1.190 10 H -0.192 1.192 11 H -0.211 1.211 12 C 0.280 3.720 13 O -0.464 6.464 14 C -0.027 4.027 15 O -0.219 6.219 16 C 0.092 3.908 17 C -0.205 4.205 18 C -0.054 4.054 19 C -0.208 4.208 20 Br 0.054 6.946 21 C -0.064 4.064 22 C -0.115 4.115 23 Cl -0.035 7.035 24 H 0.097 0.903 25 H 0.089 0.911 26 H 0.119 0.881 27 H 0.049 0.951 28 H 0.014 0.986 29 H 0.076 0.924 30 H 0.146 0.854 31 H 0.152 0.848 32 H 0.197 0.803 33 H 0.191 0.809 34 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -14.617 -27.217 2.343 30.982 hybrid contribution 1.082 1.227 -0.662 1.765 sum -13.535 -25.990 1.681 29.351 Atomic orbital electron populations 1.22110 0.77028 1.04723 1.03311 1.48082 1.08819 1.05610 1.71092 1.18812 0.91234 0.80073 0.96146 1.21732 1.36823 1.06448 0.93045 0.92669 1.25860 0.94930 0.96531 1.01923 1.70050 1.38966 1.14832 1.32975 0.85374 0.77770 0.78503 0.79201 1.18992 1.19249 1.21086 1.20761 0.87822 0.86143 0.77228 1.90707 1.16682 1.87796 1.51232 1.22795 0.90937 0.82027 1.06920 1.86269 1.35915 1.12058 1.87650 1.19167 0.92864 0.83661 0.95110 1.21608 0.91801 1.00286 1.06855 1.21364 1.01569 0.89527 0.92933 1.21692 0.94225 0.92898 1.11996 1.96755 1.84386 1.15607 1.97852 1.20935 0.94454 0.94974 0.96058 1.20334 0.85267 0.93007 1.12896 1.98399 1.10520 1.97482 1.97117 0.90303 0.91130 0.88063 0.95055 0.98572 0.92390 0.85401 0.84834 0.80312 0.80945 0.82452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.71 10.24 127.77 1.31 3.02 16 2 N -0.60 -23.98 2.86 -851.14 -2.43 -26.41 16 3 C 0.26 13.65 5.16 85.63 0.44 14.09 16 4 C -0.54 -30.80 9.39 25.60 0.24 -30.56 16 5 H 0.06 3.09 7.81 -2.91 -0.02 3.07 16 6 C 0.01 0.38 5.46 84.66 0.46 0.84 16 7 N -0.93 -55.98 13.29 21.45 0.28 -55.69 16 8 Si 0.97 44.73 29.54 68.60 2.03 46.75 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 10 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 11 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 12 C 0.49 19.89 7.75 87.66 0.68 20.57 16 13 O -0.58 -31.39 16.08 16.03 0.26 -31.13 16 14 C 0.05 1.26 3.77 71.24 0.27 1.53 16 15 O -0.31 -9.38 9.13 -73.86 -0.67 -10.05 16 16 C 0.14 3.26 6.68 22.52 0.15 3.41 16 17 C -0.19 -2.71 9.04 22.36 0.20 -2.51 16 18 C -0.03 -0.42 9.78 22.28 0.22 -0.21 16 19 C -0.13 -1.96 6.22 22.32 0.14 -1.82 16 20 Br -0.03 -0.41 33.70 -20.37 -0.69 -1.10 16 21 C -0.04 -0.81 9.56 22.29 0.21 -0.60 16 22 C -0.09 -2.08 6.33 22.41 0.14 -1.94 16 23 Cl -0.06 -1.81 28.50 -2.72 -0.08 -1.88 16 24 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.07 1.89 8.07 -2.39 -0.02 1.87 16 26 H 0.10 1.55 6.44 -2.39 -0.02 1.53 16 27 H 0.03 1.65 8.07 -2.38 -0.02 1.63 16 28 H 0.00 -0.24 7.42 -2.39 -0.02 -0.26 16 29 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 30 H 0.13 2.23 6.91 -2.39 -0.02 2.21 16 31 H 0.13 2.14 7.64 -2.39 -0.02 2.12 16 32 H 0.18 1.37 6.30 -2.91 -0.02 1.36 16 33 H 0.17 1.08 8.06 -2.91 -0.02 1.05 16 34 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -79.78 335.03 4.30 -75.48 By element: Atomic # 1 Polarization: -2.92 SS G_CDS: 1.14 Total: -1.78 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 4.47 Total: 5.83 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -2.15 Total: -82.10 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -0.42 Total: -41.19 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -0.08 Total: -1.88 kcal Atomic # 35 Polarization: -0.41 SS G_CDS: -0.69 Total: -1.10 kcal Total: -79.78 4.30 -75.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002860657.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.125 kcal (2) G-P(sol) polarization free energy of solvation -79.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds