Wall clock time and date at job start Tue Mar 31 2020 05:05:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38234 * 120.00260 * 2 1 4 4 C 1.38234 * 120.00240 * 179.97438 * 3 2 1 5 5 C 1.38233 * 120.00037 * 0.26327 * 4 3 2 6 6 S 1.76195 * 120.00186 * 179.72636 * 5 4 3 7 7 O 1.42101 * 106.40134 * 203.53747 * 6 5 4 8 8 O 1.42104 * 106.40234 * 336.45145 * 6 5 4 9 9 N 1.65591 * 107.22084 * 89.99343 * 6 5 4 10 10 C 1.46508 * 120.00112 * 90.00065 * 9 6 5 11 11 C 1.50703 * 109.46876 * 94.99960 * 10 9 6 12 12 H 1.07997 * 120.00438 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99956 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00168 * 179.97438 * 13 11 10 15 15 Si 1.86806 * 119.99601 * 0.02562 * 13 11 10 16 16 H 1.48494 * 109.47131 * 90.00007 * 15 13 11 17 17 H 1.48506 * 109.46830 * 210.00061 * 15 13 11 18 18 H 1.48498 * 109.47271 * 329.99286 * 15 13 11 19 19 C 1.46505 * 120.00225 * 269.99904 * 9 6 5 20 20 C 1.52998 * 109.46757 * 95.00291 * 19 9 6 21 21 C 1.50701 * 109.47079 * 180.02562 * 20 19 9 22 22 C 1.38242 * 119.99532 * 269.72471 * 21 20 19 23 23 C 1.38232 * 119.99586 * 179.76088 * 22 21 20 24 24 C 1.38236 * 120.00555 * 0.51284 * 23 22 21 25 25 C 1.38244 * 119.99665 * 359.73907 * 24 23 22 26 26 C 1.38234 * 120.00414 * 89.99294 * 21 20 19 27 27 C 1.38238 * 119.99752 * 359.47832 * 5 4 3 28 28 C 1.38234 * 120.00033 * 0.49775 * 27 5 4 29 29 H 1.09000 * 109.46827 * 89.99810 * 1 2 3 30 30 H 1.08999 * 109.47240 * 210.00239 * 1 2 3 31 31 H 1.08999 * 109.46861 * 329.99859 * 1 2 3 32 32 H 1.07999 * 119.99751 * 359.97438 * 3 2 1 33 33 H 1.08002 * 119.99744 * 179.97438 * 4 3 2 34 34 H 1.08998 * 109.47366 * 214.99740 * 10 9 6 35 35 H 1.08999 * 109.47097 * 335.00095 * 10 9 6 36 36 H 0.97003 * 120.00174 * 179.97438 * 14 13 11 37 37 H 1.08997 * 109.47149 * 215.00105 * 19 9 6 38 38 H 1.09000 * 109.46984 * 335.00395 * 19 9 6 39 39 H 1.09004 * 109.46740 * 299.99752 * 20 19 9 40 40 H 1.08998 * 109.47791 * 60.00159 * 20 19 9 41 41 H 1.07996 * 119.99779 * 359.97438 * 22 21 20 42 42 H 1.08002 * 119.99985 * 180.22711 * 23 22 21 43 43 H 1.07998 * 120.00332 * 179.72372 * 24 23 22 44 44 H 1.07993 * 120.00092 * 179.97438 * 25 24 23 45 45 H 1.08001 * 119.99711 * 0.02562 * 26 21 20 46 46 H 1.07999 * 119.99934 * 180.25938 * 27 5 4 47 47 H 1.08001 * 120.00294 * 179.76453 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1971 0.0005 5 6 4.2717 0.0000 -0.0044 6 16 6.0337 0.0000 -0.0110 7 8 6.4329 -1.2487 -0.5594 8 8 6.4329 1.2507 -0.5547 9 7 6.5299 -0.0030 1.5688 10 6 6.7493 -1.2731 2.2653 11 6 8.2071 -1.6460 2.1824 12 1 8.9007 -1.0018 1.6626 13 6 8.6553 -2.8104 2.7694 14 7 9.9274 -3.1361 2.6966 15 14 7.4553 -3.9259 3.6667 16 1 6.8925 -4.9159 2.7138 17 1 8.1645 -4.6385 4.7597 18 1 6.3551 -3.1099 4.2403 19 6 6.7494 1.2644 2.2701 20 6 5.4875 1.6417 3.0485 21 6 5.7130 2.9457 3.7694 22 6 6.2204 2.9458 5.0554 23 6 6.4320 4.1421 5.7148 24 6 6.1262 5.3380 5.0924 25 6 5.6139 5.3377 3.8084 26 6 5.4073 4.1416 3.1470 27 6 3.5805 -1.1972 0.0010 28 6 2.1982 -1.1972 0.0009 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6582 2.1324 -0.0004 33 1 4.1205 2.1325 0.0001 34 1 6.4599 -1.1688 3.3110 35 1 6.1477 -2.0526 1.7978 36 1 10.2427 -3.9551 3.1099 37 1 7.5846 1.1568 2.9621 38 1 6.9765 2.0461 1.5452 39 1 4.6522 1.7493 2.3564 40 1 5.2603 0.8600 3.7734 41 1 6.4548 2.0113 5.5434 42 1 6.8318 4.1424 6.7181 43 1 6.2873 6.2724 5.6093 44 1 5.3746 6.2719 3.3223 45 1 5.0065 4.1413 2.1441 46 1 4.1205 -2.1325 0.0013 47 1 1.6582 -2.1325 0.0013 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000002868024.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:37 Heat of formation + Delta-G solvation = -47.315773 kcal Electronic energy + Delta-G solvation = -30102.742187 eV Core-core repulsion = 26148.244527 eV Total energy + Delta-G solvation = -3954.497661 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 359.134 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.32284 -40.15581 -38.37023 -37.81273 -36.90814 -34.87267 -33.97489 -33.63300 -32.05675 -31.69618 -30.39407 -28.39035 -28.16490 -24.92027 -23.87969 -23.63881 -23.36539 -22.81979 -21.76593 -20.01710 -19.23585 -18.78513 -18.33410 -17.61735 -17.34818 -16.52147 -16.37788 -16.18195 -16.04680 -15.89637 -15.44440 -15.32276 -14.78119 -14.57222 -14.55344 -14.53224 -14.46959 -14.14349 -13.86008 -13.73345 -13.36548 -13.25491 -13.22041 -13.10297 -13.08942 -13.06453 -12.95167 -12.73466 -12.34162 -12.15162 -12.10977 -11.98454 -11.84080 -11.70252 -11.68676 -11.56003 -10.77671 -10.11985 -10.04731 -9.95269 -9.74639 -9.43286 -8.28104 -6.33742 -0.64131 -0.20061 0.30220 0.50321 0.57499 1.36055 1.39853 1.48048 1.98470 2.35291 2.52666 2.82494 2.94613 3.05566 3.27379 3.75767 3.79748 3.86726 3.93085 3.94539 4.10667 4.23414 4.32220 4.33807 4.34772 4.37190 4.42525 4.59557 4.65418 4.68255 4.71451 4.75260 4.83227 4.83507 4.95259 5.00886 5.09272 5.09996 5.13106 5.23892 5.25517 5.26413 5.33933 5.47356 5.47818 5.62902 5.69156 5.71555 5.80863 5.88953 6.20063 6.30460 6.68973 7.28744 8.89517 Molecular weight = 359.13amu Principal moments of inertia in cm(-1) A = 0.005875 B = 0.005290 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4764.559530 B = 5291.410214 C = 8376.663479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.030 4.030 3 C -0.140 4.140 4 C -0.027 4.027 5 C -0.684 4.684 6 S 2.682 3.318 7 O -0.991 6.991 8 O -0.989 6.989 9 N -0.982 5.982 10 C 0.235 3.765 11 C -0.541 4.541 12 H 0.028 0.972 13 C 0.010 3.990 14 N -0.948 5.948 15 Si 0.938 3.062 16 H -0.267 1.267 17 H -0.279 1.279 18 H -0.228 1.228 19 C 0.125 3.875 20 C -0.094 4.094 21 C -0.089 4.089 22 C -0.131 4.131 23 C -0.127 4.127 24 C -0.130 4.130 25 C -0.124 4.124 26 C -0.128 4.128 27 C -0.036 4.036 28 C -0.145 4.145 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.164 0.836 33 H 0.145 0.855 34 H 0.057 0.943 35 H 0.036 0.964 36 H 0.267 0.733 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.121 0.879 42 H 0.137 0.863 43 H 0.143 0.857 44 H 0.144 0.856 45 H 0.132 0.868 46 H 0.129 0.871 47 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.804 14.032 2.435 26.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.030 4.030 3 C -0.159 4.159 4 C -0.047 4.047 5 C -0.775 4.775 6 S 2.778 3.222 7 O -0.981 6.981 8 O -0.980 6.980 9 N -0.819 5.819 10 C 0.110 3.890 11 C -0.580 4.580 12 H 0.047 0.953 13 C -0.188 4.188 14 N -0.588 5.588 15 Si 0.759 3.241 16 H -0.192 1.192 17 H -0.204 1.204 18 H -0.151 1.151 19 C 0.000 4.000 20 C -0.133 4.133 21 C -0.090 4.090 22 C -0.149 4.149 23 C -0.145 4.145 24 C -0.148 4.148 25 C -0.142 4.142 26 C -0.146 4.146 27 C -0.056 4.056 28 C -0.163 4.163 29 H 0.109 0.891 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.181 0.819 33 H 0.163 0.837 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.139 0.861 42 H 0.155 0.845 43 H 0.161 0.839 44 H 0.161 0.839 45 H 0.150 0.850 46 H 0.147 0.853 47 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -22.094 13.897 1.761 26.161 hybrid contribution 0.277 -1.052 0.387 1.155 sum -21.817 12.845 2.148 25.408 Atomic orbital electron populations 1.21013 0.87814 1.04725 1.04048 1.20709 0.98344 0.92586 0.91378 1.21530 0.93076 0.99595 1.01673 1.21106 0.95903 0.95848 0.91805 1.30612 1.25029 1.01044 1.20796 1.01756 0.75218 0.72346 0.72886 1.93538 1.82278 1.45151 1.77155 1.93463 1.82631 1.44579 1.77281 1.57089 1.81419 1.12577 1.30767 1.19252 0.94720 0.80655 0.94350 1.21654 0.94188 1.07182 1.34947 0.95329 1.25877 0.97044 0.99008 0.96827 1.70067 1.16608 1.25728 1.46375 0.85873 0.79940 0.79515 0.78757 1.19228 1.20424 1.15092 1.21351 0.98348 0.83541 0.96789 1.21031 0.97788 0.94899 0.99586 1.19828 0.99627 0.94725 0.94773 1.21292 0.99643 0.99093 0.94865 1.21410 0.99869 0.92392 1.00801 1.21475 0.99095 0.98675 0.95561 1.21445 0.99057 0.98393 0.95265 1.21315 1.00678 0.92101 1.00460 1.21088 0.96146 0.96170 0.92172 1.21485 0.92916 0.99843 1.02076 0.89123 0.89939 0.89422 0.81857 0.83715 0.92473 0.94625 0.92358 0.90663 0.89764 0.89998 0.90213 0.86074 0.84535 0.83912 0.83869 0.84992 0.85304 0.82686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 10.01 71.24 0.71 -0.39 16 2 C -0.03 -0.52 5.88 -19.86 -0.12 -0.63 16 3 C -0.14 -2.56 9.70 22.27 0.22 -2.35 16 4 C -0.03 -0.67 8.42 22.27 0.19 -0.49 16 5 C -0.68 -21.34 5.97 22.27 0.13 -21.20 16 6 S 2.68 109.69 5.64 -56.49 -0.32 109.37 16 7 O -0.99 -49.03 16.26 -128.00 -2.08 -51.12 16 8 O -0.99 -41.79 15.84 -128.00 -2.03 -43.82 16 9 N -0.98 -40.27 2.77 -519.82 -1.44 -41.71 16 10 C 0.23 10.89 4.17 85.63 0.36 11.25 16 11 C -0.54 -31.68 9.94 25.60 0.25 -31.43 16 12 H 0.03 1.90 8.06 -2.91 -0.02 1.87 16 13 C 0.01 0.60 5.47 84.66 0.46 1.07 16 14 N -0.95 -60.35 13.96 21.45 0.30 -60.05 16 15 Si 0.94 42.69 27.47 68.60 1.88 44.57 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 17 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 18 H -0.23 -9.00 6.54 99.48 0.65 -8.35 16 19 C 0.13 4.39 5.66 86.38 0.49 4.88 16 20 C -0.09 -2.57 5.67 29.85 0.17 -2.40 16 21 C -0.09 -2.24 5.13 -19.86 -0.10 -2.34 16 22 C -0.13 -3.21 9.70 22.27 0.22 -2.99 16 23 C -0.13 -2.63 10.05 22.27 0.22 -2.41 16 24 C -0.13 -2.39 10.05 22.27 0.22 -2.17 16 25 C -0.12 -2.33 10.05 22.27 0.22 -2.11 16 26 C -0.13 -2.81 9.70 22.27 0.22 -2.59 16 27 C -0.04 -1.04 9.52 22.27 0.21 -0.83 16 28 C -0.14 -3.05 9.70 22.27 0.22 -2.84 16 29 H 0.09 0.66 8.14 -2.39 -0.02 0.65 16 30 H 0.08 0.63 8.09 -2.39 -0.02 0.61 16 31 H 0.09 0.57 8.09 -2.39 -0.02 0.55 16 32 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 33 H 0.15 3.26 7.62 -2.91 -0.02 3.24 16 34 H 0.06 2.41 7.17 -2.39 -0.02 2.39 16 35 H 0.04 1.62 7.03 -2.39 -0.02 1.61 16 36 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 37 H 0.07 2.86 8.11 -2.39 -0.02 2.84 16 38 H 0.08 2.91 6.91 -2.39 -0.02 2.89 16 39 H 0.08 1.98 6.95 -2.39 -0.02 1.97 16 40 H 0.08 2.17 8.08 -2.39 -0.02 2.15 16 41 H 0.12 2.93 8.06 -2.91 -0.02 2.90 16 42 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 43 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 44 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 45 H 0.13 2.51 8.06 -2.91 -0.02 2.48 16 46 H 0.13 3.92 7.62 -2.91 -0.02 3.90 16 47 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -80.30 404.07 1.51 -78.79 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: 0.90 Total: 23.93 kcal Atomic # 6 Polarization: -64.27 SS G_CDS: 4.30 Total: -59.97 kcal Atomic # 7 Polarization: -100.62 SS G_CDS: -1.14 Total: -101.75 kcal Atomic # 8 Polarization: -90.83 SS G_CDS: -4.11 Total: -94.94 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.88 Total: 44.57 kcal Atomic # 16 Polarization: 109.69 SS G_CDS: -0.32 Total: 109.37 kcal Total: -80.30 1.51 -78.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000002868024.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.474 kcal (2) G-P(sol) polarization free energy of solvation -80.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds