Wall clock time and date at job start Tue Mar 31 2020 05:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99776 * 2 1 4 4 H 1.48501 * 109.46939 * 270.00306 * 3 2 1 5 5 H 1.48494 * 109.47002 * 29.99954 * 3 2 1 6 6 H 1.48498 * 109.47026 * 150.00118 * 3 2 1 7 7 C 1.37881 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99612 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99917 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46734 * 180.02562 * 9 7 2 11 11 C 1.34774 * 119.99858 * 269.99930 * 10 9 7 12 12 O 1.21285 * 120.00266 * 4.43081 * 11 10 9 13 13 C 1.50707 * 119.99689 * 184.43211 * 11 10 9 14 14 O 1.45200 * 109.46740 * 174.72993 * 13 11 10 15 15 C 1.34231 * 116.99591 * 180.02562 * 14 13 11 16 16 O 1.20823 * 120.00170 * 359.97438 * 15 14 13 17 17 C 1.50704 * 119.99756 * 180.02562 * 15 14 13 18 18 C 1.52997 * 109.46971 * 179.97438 * 17 15 14 19 19 C 1.53000 * 109.47084 * 179.97438 * 18 17 15 20 20 C 1.54261 * 110.03053 * 292.90776 * 19 18 17 21 21 C 1.54965 * 104.15863 * 217.13655 * 20 19 18 22 22 C 1.54888 * 102.78024 * 37.88711 * 21 20 19 23 23 C 1.53879 * 110.03330 * 175.69020 * 19 18 17 24 24 C 1.39930 * 119.99689 * 90.00078 * 10 9 7 25 25 C 1.38872 * 120.06914 * 246.70733 * 24 10 9 26 26 C 1.38109 * 119.92865 * 179.97438 * 25 24 10 27 27 C 1.38280 * 120.07275 * 359.97438 * 26 25 24 28 28 C 1.38289 * 120.13927 * 0.05171 * 27 26 25 29 29 C 1.38114 * 120.06901 * 359.94782 * 28 27 26 30 30 H 0.96991 * 120.00637 * 359.97438 * 1 2 3 31 31 H 1.08994 * 109.46888 * 60.00160 * 9 7 2 32 32 H 1.09001 * 109.46851 * 299.99645 * 9 7 2 33 33 H 1.08998 * 109.47306 * 294.73002 * 13 11 10 34 34 H 1.08998 * 109.46760 * 54.73284 * 13 11 10 35 35 H 1.09000 * 109.46902 * 299.99547 * 17 15 14 36 36 H 1.08999 * 109.47269 * 59.99607 * 17 15 14 37 37 H 1.09000 * 109.47285 * 299.99738 * 18 17 15 38 38 H 1.09002 * 109.47596 * 59.99944 * 18 17 15 39 39 H 1.08996 * 110.01725 * 54.30199 * 19 18 17 40 40 H 1.08997 * 110.48865 * 335.77925 * 20 19 18 41 41 H 1.09003 * 110.48821 * 98.42920 * 20 19 18 42 42 H 1.08999 * 110.72056 * 279.57413 * 21 20 19 43 43 H 1.09004 * 110.92449 * 156.29829 * 21 20 19 44 44 H 1.08997 * 110.48852 * 203.40415 * 22 21 20 45 45 H 1.09003 * 110.59693 * 80.81920 * 22 21 20 46 46 H 1.09002 * 110.02879 * 238.57252 * 23 19 18 47 47 H 1.09002 * 110.03014 * 359.95040 * 23 19 18 48 48 H 1.07999 * 120.03703 * 359.70435 * 25 24 10 49 49 H 1.07998 * 119.96629 * 179.97438 * 26 25 24 50 50 H 1.07997 * 119.93383 * 180.02562 * 27 26 25 51 51 H 1.07997 * 119.96184 * 179.97438 * 28 27 26 52 52 H 1.08001 * 120.03326 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.6411 -4.1248 -1.1677 12 8 2.3105 -3.6132 -2.2165 13 6 3.5417 -5.3332 -1.1696 14 8 3.7713 -5.7634 -2.5373 15 6 4.5585 -6.8362 -2.7146 16 8 5.0400 -7.3968 -1.7587 17 6 4.8425 -7.3406 -4.1060 18 6 5.7589 -8.5633 -4.0280 19 6 6.0467 -9.0758 -5.4405 20 6 4.7563 -9.6381 -6.0718 21 6 5.2370 -10.8642 -6.8885 22 6 6.3390 -11.4683 -5.9832 23 6 7.0528 -10.2388 -5.3845 24 6 2.6579 -4.1443 1.2113 25 6 3.9904 -4.0041 1.5764 26 6 4.4359 -4.5296 2.7734 27 6 3.5566 -5.1943 3.6083 28 6 2.2291 -5.3361 3.2475 29 6 1.7774 -4.8128 2.0518 30 1 -0.4850 0.8399 0.0004 31 1 0.6242 -2.5567 -0.8903 32 1 0.6249 -2.5571 0.8897 33 1 4.4937 -5.0776 -0.7045 34 1 3.0686 -6.1397 -0.6096 35 1 3.9061 -7.6182 -4.5900 36 1 5.3317 -6.5566 -4.6839 37 1 6.6952 -8.2853 -3.5441 38 1 5.2700 -9.3475 -3.4499 39 1 6.4430 -8.2688 -6.0567 40 1 4.0557 -9.9475 -5.2963 41 1 4.2984 -8.8976 -6.7276 42 1 5.6527 -10.5507 -7.8461 43 1 4.4249 -11.5762 -7.0361 44 1 7.0350 -12.0631 -6.5746 45 1 5.8963 -12.0748 -5.1930 46 1 7.9369 -9.9964 -5.9742 47 1 7.3367 -10.4375 -4.3510 48 1 4.6786 -3.4886 0.9229 49 1 5.4721 -4.4213 3.0577 50 1 3.9073 -5.6040 4.5440 51 1 1.5450 -5.8561 3.9015 52 1 0.7405 -4.9235 1.7707 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003219497.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:47 Heat of formation + Delta-G solvation = -129.056028 kcal Electronic energy + Delta-G solvation = -31560.121809 eV Core-core repulsion = 27295.159848 eV Total energy + Delta-G solvation = -4264.961961 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 359.193 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.96635 -41.20729 -39.60048 -39.29168 -37.66003 -36.57866 -34.85175 -34.27570 -31.97711 -31.23575 -30.58192 -29.65694 -29.23107 -28.27622 -25.25567 -24.52362 -23.78873 -23.37436 -21.92136 -21.34404 -20.71903 -20.46888 -18.95862 -18.84482 -18.64791 -18.02047 -17.41765 -17.27105 -16.95247 -16.70438 -16.46474 -16.08315 -15.85221 -15.68661 -15.39841 -15.03272 -14.65232 -14.48825 -14.33480 -14.16917 -14.02127 -13.93262 -13.68546 -13.57136 -13.43013 -13.14474 -13.06708 -12.70138 -12.48351 -12.36067 -12.22349 -12.15993 -11.98122 -11.93307 -11.86257 -11.81777 -11.76975 -11.61273 -11.45614 -11.42894 -11.19577 -11.09848 -10.69520 -10.22372 -9.87447 -9.32018 -8.27725 -6.41982 0.28762 0.45876 1.06547 1.18665 1.33540 1.36831 1.42088 1.48263 2.22706 2.37587 2.81194 3.02570 3.28785 3.53598 3.65836 3.77105 3.84294 3.86144 3.92570 4.04356 4.07873 4.13757 4.15491 4.28700 4.51081 4.55705 4.58910 4.60265 4.63432 4.67579 4.71055 4.73288 4.82513 4.91183 4.95036 5.01248 5.04076 5.11236 5.12861 5.18365 5.19953 5.27318 5.31219 5.33655 5.42548 5.49363 5.52354 5.58600 5.59891 5.61129 5.69066 5.95866 6.01051 6.46556 6.60503 6.63832 7.05789 7.28339 8.79946 Molecular weight = 359.19amu Principal moments of inertia in cm(-1) A = 0.011126 B = 0.002146 C = 0.001912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2515.932231 B =13046.432652 C =14638.608316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.010 3.990 3 Si 0.968 3.032 4 H -0.277 1.277 5 H -0.272 1.272 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.051 0.949 9 C 0.267 3.733 10 N -0.555 5.555 11 C 0.508 3.492 12 O -0.557 6.557 13 C 0.068 3.932 14 O -0.350 6.350 15 C 0.458 3.542 16 O -0.530 6.530 17 C -0.108 4.108 18 C -0.093 4.093 19 C -0.089 4.089 20 C -0.127 4.127 21 C -0.126 4.126 22 C -0.127 4.127 23 C -0.122 4.122 24 C 0.114 3.886 25 C -0.140 4.140 26 C -0.103 4.103 27 C -0.117 4.117 28 C -0.102 4.102 29 C -0.137 4.137 30 H 0.269 0.731 31 H 0.009 0.991 32 H 0.029 0.971 33 H 0.111 0.889 34 H 0.110 0.890 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.083 0.917 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.069 0.931 47 H 0.061 0.939 48 H 0.114 0.886 49 H 0.153 0.847 50 H 0.161 0.839 51 H 0.156 0.844 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.223 -22.336 -3.323 26.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.189 4.189 3 Si 0.792 3.208 4 H -0.203 1.203 5 H -0.197 1.197 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.070 0.930 9 C 0.148 3.852 10 N -0.283 5.283 11 C 0.296 3.704 12 O -0.435 6.435 13 C -0.009 4.009 14 O -0.266 6.266 15 C 0.303 3.697 16 O -0.420 6.420 17 C -0.145 4.145 18 C -0.131 4.131 19 C -0.107 4.107 20 C -0.165 4.165 21 C -0.163 4.163 22 C -0.164 4.164 23 C -0.160 4.160 24 C 0.024 3.976 25 C -0.160 4.160 26 C -0.122 4.122 27 C -0.135 4.135 28 C -0.121 4.121 29 C -0.156 4.156 30 H 0.078 0.922 31 H 0.027 0.973 32 H 0.047 0.953 33 H 0.129 0.871 34 H 0.128 0.872 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.080 0.920 46 H 0.088 0.912 47 H 0.080 0.920 48 H 0.132 0.868 49 H 0.171 0.829 50 H 0.179 0.821 51 H 0.173 0.827 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 12.993 -22.076 -3.599 25.867 hybrid contribution -0.189 1.374 0.025 1.387 sum 12.804 -20.702 -3.574 24.603 Atomic orbital electron populations 1.70027 1.07421 1.28345 1.50615 1.25827 0.95873 1.02942 0.94266 0.85413 0.78720 0.78343 0.78359 1.20296 1.19718 1.18891 1.21572 0.93173 0.91654 1.51737 0.93037 1.18933 0.87236 0.82728 0.96340 1.45687 1.44990 1.33841 1.03813 1.20517 0.81322 0.85038 0.83502 1.90689 1.58223 1.62424 1.32127 1.22615 1.00705 0.95459 0.82136 1.86582 1.63858 1.45930 1.30256 1.24771 0.74042 0.76449 0.94460 1.90644 1.49740 1.57266 1.44309 1.21649 1.04314 1.00308 0.88240 1.21532 0.98806 0.95158 0.97605 1.21788 0.96089 0.98183 0.94678 1.22559 0.96834 0.97798 0.99301 1.22516 0.98269 0.97083 0.98461 1.22374 0.97834 0.97269 0.98938 1.22216 0.98106 0.94491 1.01189 1.18066 0.94125 0.97678 0.87742 1.21418 0.94584 1.01066 0.98892 1.21360 1.01451 0.96789 0.92553 1.21599 0.92917 0.98460 1.00533 1.21379 0.97013 0.98716 0.94945 1.21415 0.99613 0.98502 0.96108 0.92207 0.97333 0.95331 0.87144 0.87232 0.85949 0.85760 0.91576 0.91734 0.89879 0.91785 0.90902 0.91144 0.91433 0.91210 0.92020 0.91188 0.91992 0.86822 0.82898 0.82128 0.82666 0.86299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.07 13.29 21.45 0.28 -55.78 16 2 C 0.01 0.60 5.46 84.66 0.46 1.06 16 3 Si 0.97 45.50 29.54 68.60 2.03 47.52 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.54 -31.99 9.39 25.60 0.24 -31.75 16 8 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 9 C 0.27 14.78 5.07 85.63 0.43 15.22 16 10 N -0.56 -25.34 2.51 -635.30 -1.59 -26.93 16 11 C 0.51 22.99 7.62 87.66 0.67 23.65 16 12 O -0.56 -30.21 16.14 15.70 0.25 -29.95 16 13 C 0.07 2.37 4.61 71.24 0.33 2.70 16 14 O -0.35 -11.87 9.76 -45.09 -0.44 -12.31 16 15 C 0.46 12.48 7.96 71.24 0.57 13.05 16 16 O -0.53 -16.27 15.73 21.97 0.35 -15.92 16 17 C -0.11 -1.92 5.66 29.85 0.17 -1.75 16 18 C -0.09 -1.48 3.63 30.59 0.11 -1.37 16 19 C -0.09 -1.09 2.93 -10.07 -0.03 -1.12 16 20 C -0.13 -1.51 5.50 31.69 0.17 -1.34 16 21 C -0.13 -1.36 6.91 31.91 0.22 -1.14 16 22 C -0.13 -1.40 6.83 31.67 0.22 -1.18 16 23 C -0.12 -1.44 6.46 31.32 0.20 -1.24 16 24 C 0.11 4.24 4.43 38.15 0.17 4.41 16 25 C -0.14 -4.49 8.45 22.39 0.19 -4.31 16 26 C -0.10 -2.47 10.04 22.25 0.22 -2.24 16 27 C -0.12 -2.42 10.04 22.29 0.22 -2.20 16 28 C -0.10 -2.40 10.04 22.25 0.22 -2.17 16 29 C -0.14 -4.34 9.64 22.39 0.22 -4.13 16 30 H 0.27 15.23 8.31 -92.72 -0.77 14.46 16 31 H 0.01 0.54 7.49 -2.39 -0.02 0.52 16 32 H 0.03 1.61 7.82 -2.39 -0.02 1.59 16 33 H 0.11 3.54 6.96 -2.39 -0.02 3.53 16 34 H 0.11 3.46 8.02 -2.39 -0.02 3.44 16 35 H 0.12 1.85 7.48 -2.39 -0.02 1.83 16 36 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 37 H 0.07 1.14 8.10 -2.39 -0.02 1.12 16 38 H 0.06 1.14 7.98 -2.39 -0.02 1.12 16 39 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.06 0.83 7.77 -2.39 -0.02 0.81 16 41 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 42 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 44 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.06 0.79 7.67 -2.39 -0.02 0.77 16 48 H 0.11 3.75 7.89 -2.91 -0.02 3.73 16 49 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 50 H 0.16 2.08 8.06 -2.91 -0.02 2.06 16 51 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 52 H 0.12 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -76.97 429.61 6.77 -70.19 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.89 Total: 19.03 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 5.01 Total: 4.15 kcal Atomic # 7 Polarization: -81.41 SS G_CDS: -1.31 Total: -82.72 kcal Atomic # 8 Polarization: -58.34 SS G_CDS: 0.16 Total: -58.18 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -76.97 6.77 -70.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003219497.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.864 kcal (2) G-P(sol) polarization free energy of solvation -76.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds